Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012455.1 Kokia drynarioides strain JFW-HI SEQ_127459, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 421919
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 33 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:358557 original size:7 final size:7
Alignment explanation
Indices: 358519--358545 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
358509 CCTATAAATA
358519 GAAGAAT
1 GAAGAAT
358526 GAAGAAT
1 GAAGAAT
358533 GAAGAAT
1 GAAGAAT
358540 GAAGAA
1 GAAGAA
358546 AGAATCAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.30, T:0.11
Consensus pattern (7 bp):
GAAGAAT
Found at i:360992 original size:14 final size:14
Alignment explanation
Indices: 360975--361009 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
360965 ATTATAATTA
* *
360975 TAATTTAATTTGTT
1 TAATTTAACTTCTT
360989 TAATTTAACTTCTT
1 TAATTTAACTTCTT
361003 TAATTTA
1 TAATTTA
361010 TTAAATTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (14 bp):
TAATTTAACTTCTT
Found at i:361177 original size:26 final size:25
Alignment explanation
Indices: 361148--361211 Score: 75
Period size: 20 Copynumber: 2.7 Consensus size: 25
361138 TATTTTTTTT
361148 ACTTTTACTTTTAAATTAAAATTCA
1 ACTTTTACTTTTAAATTAAAATTCA
*
361173 A-----ACTTTTAAATTAATATTCAA
1 ACTTTTACTTTTAAATTAAAATTC-A
361194 ACTTTTACTTTTAAATTA
1 ACTTTTACTTTTAAATTA
361212 TATTTTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 11
0.73 0.02 0.25
Matches are distributed among these distances:
20 17 0.53
21 2 0.06
25 1 0.03
26 12 0.38
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (25 bp):
ACTTTTACTTTTAAATTAAAATTCA
Found at i:361179 original size:20 final size:20
Alignment explanation
Indices: 361154--361200 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
361144 TTTTACTTTT
361154 ACTTTTAAATTAAAATTCAA
1 ACTTTTAAATTAAAATTCAA
*
361174 ACTTTTAAATTAATATTCAA
1 ACTTTTAAATTAAAATTCAA
361194 ACTTTTA
1 ACTTTTA
361201 CTTTTAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.45
Consensus pattern (20 bp):
ACTTTTAAATTAAAATTCAA
Found at i:361458 original size:41 final size:41
Alignment explanation
Indices: 361396--361474 Score: 99
Period size: 41 Copynumber: 1.9 Consensus size: 41
361386 GATGTGACGG
* *
361396 GCCTGACGTGTGGCCTGCCATTGGTCGA-CTATCCATCACGA
1 GCCTGACGTGTGACCTACCATTGGT-GAGCTATCCATCACGA
*
361437 GCCTGACGCT-TGACCTACCATTGGTTAGCTATCCATCA
1 GCCTGACG-TGTGACCTACCATTGGTGAGCTATCCATCA
361475 AGGCTTAACA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 1 0.03
41 31 0.94
42 1 0.03
ACGTcount: A:0.19, C:0.32, G:0.23, T:0.27
Consensus pattern (41 bp):
GCCTGACGTGTGACCTACCATTGGTGAGCTATCCATCACGA
Found at i:364542 original size:57 final size:59
Alignment explanation
Indices: 364472--364599 Score: 145
Period size: 61 Copynumber: 2.2 Consensus size: 59
364462 TAAATTTGAT
* * *
364472 AAGTGGTGTCAGCCA-CCATAGGGCAAACACCAAT-AAAAAAATT-TTGAGTACTTAAAA
1 AAGTGGTGCCAGCCATCAATAGGGCAAA-ACCAATAAAAAAAATTCTTGAGTACTGAAAA
* * *
364529 AAGTGGTGCCAGCCATTAATAGGGCAAAACTAGTGAAAAAAAATTCCTTGAGTACTGAAAA
1 AAGTGGTGCCAGCCATCAATAGGGCAAAACCAAT-AAAAAAAATT-CTTGAGTACTGAAAA
*
364590 AGGTGGTGCC
1 AAGTGGTGCC
364600 GACCATTAGC
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
57 18 0.31
58 10 0.17
59 9 0.15
61 22 0.37
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.21
Consensus pattern (59 bp):
AAGTGGTGCCAGCCATCAATAGGGCAAAACCAATAAAAAAAATTCTTGAGTACTGAAAA
Found at i:367695 original size:24 final size:24
Alignment explanation
Indices: 367647--367761 Score: 81
Period size: 24 Copynumber: 4.7 Consensus size: 24
367637 TTCATTGCGT
*
367647 TTTACACTC-TCTAGCCTT-CATACA
1 TTTACACTCATC-AG-CTTGCACACA
367671 TTTACACTCATCAGCTTGCACACA
1 TTTACACTCATCAGCTTGCACACA
* ** * * *
367695 TTTACGCTCGCCAGCATCCATATGCA
1 TTTACACTCATCAGCTTGCACA--CA
**
367721 TTTACACTCGCCAGCTTGCACACA
1 TTTACACTCATCAGCTTGCACACA
* *
367745 TTTACGCTTATCAGCTT
1 TTTACACTCATCAGCTT
367762 TCATATGTTT
Statistics
Matches: 72, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
23 3 0.04
24 47 0.65
25 2 0.03
26 20 0.28
ACGTcount: A:0.24, C:0.33, G:0.10, T:0.32
Consensus pattern (24 bp):
TTTACACTCATCAGCTTGCACACA
Found at i:367767 original size:50 final size:50
Alignment explanation
Indices: 367669--367787 Score: 148
Period size: 50 Copynumber: 2.4 Consensus size: 50
367659 AGCCTTCATA
* *
367669 CATTTACACTCATCAGCTTGCACACATTTACGCTCGCCAGCATCCATATG
1 CATTTACACTCGTCAGCTTGCACACATTTACGCTCACCAGCATCCATATG
* * * * *
367719 CATTTACACTCGCCAGCTTGCACACATTTACGCTTATCAGCTTTCATATG
1 CATTTACACTCGTCAGCTTGCACACATTTACGCTCACCAGCATCCATATG
** *
367769 TTTTTACGCTCGTCAGCTT
1 CATTTACACTCGTCAGCTT
367788 TTGTATGAGT
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 58 1.00
ACGTcount: A:0.23, C:0.31, G:0.13, T:0.34
Consensus pattern (50 bp):
CATTTACACTCGTCAGCTTGCACACATTTACGCTCACCAGCATCCATATG
Found at i:367853 original size:24 final size:24
Alignment explanation
Indices: 367822--367880 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
367812 TTTCCTATAC
367822 GTTTACGCTCGCCAACTTGCACAT
1 GTTTACGCTCGCCAACTTGCACAT
* *
367846 GTTTACGCTCGCCAATTTGCATAT
1 GTTTACGCTCGCCAACTTGCACAT
*
367870 GTTTATGCTCG
1 GTTTACGCTCG
367881 TAAGCTTTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.36
Consensus pattern (24 bp):
GTTTACGCTCGCCAACTTGCACAT
Found at i:374757 original size:26 final size:26
Alignment explanation
Indices: 374728--374808 Score: 71
Period size: 26 Copynumber: 3.2 Consensus size: 26
374718 TACGCTTGTT
374728 AGCTTTCATATGCGTTTACACTAGCC
1 AGCTTTCATATGCGTTTACACTAGCC
* * * *
374754 AGCTTGCACA-G-GTTTA-AGCTCGTC
1 AGCTTTCATATGCGTTTACA-CTAGCC
*
374778 AGCTTTCATATGCATTTACACTCA-CC
1 AGCTTTCATATGCGTTTACACT-AGCC
374804 AGCTT
1 AGCTT
374809 GCAGACATTT
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
23 1 0.02
24 17 0.41
25 2 0.05
26 20 0.49
27 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.33
Consensus pattern (26 bp):
AGCTTTCATATGCGTTTACACTAGCC
Found at i:374834 original size:50 final size:50
Alignment explanation
Indices: 374703--374867 Score: 154
Period size: 50 Copynumber: 3.3 Consensus size: 50
374693 TTATGCTCGT
* * ** * *
374703 CAGCTTGTACACATTTACGCTTGTTAGCTTTCATATGCGTTTACACT-AGC
1 CAGCTTGCACACATTTAAGCTCATCACCTTTCATATGCGTTTACACTCA-C
** * * *
374753 CAGCTTGCACAGGTTTAAGCTCGTCAGCTTTCATATGCATTTACACTCAC
1 CAGCTTGCACACATTTAAGCTCATCACCTTTCATATGCGTTTACACTCAC
* * * * *
374803 CAGCTTGCAGACATTTATA-CTCATCACCTTTCATATGTGCTGACGCTCAC
1 CAGCTTGCACACATTTA-AGCTCATCACCTTTCATATGCGTTTACACTCAC
374853 CAGCTTGCACACATT
1 CAGCTTGCACACATT
374868 ATGTAATAGC
Statistics
Matches: 95, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
50 93 0.98
51 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (50 bp):
CAGCTTGCACACATTTAAGCTCATCACCTTTCATATGCGTTTACACTCAC
Found at i:385908 original size:10 final size:10
Alignment explanation
Indices: 385895--385919 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
385885 GATTGGTATG
385895 GAAGATGATC
1 GAAGATGATC
385905 GAAGATGATC
1 GAAGATGATC
385915 GAAGA
1 GAAGA
385920 AATGAAATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.08, G:0.32, T:0.16
Consensus pattern (10 bp):
GAAGATGATC
Found at i:387883 original size:14 final size:14
Alignment explanation
Indices: 387864--387892 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
387854 AATATTTAGC
387864 ACTCAACACATTTG
1 ACTCAACACATTTG
387878 ACTCAACACATTTG
1 ACTCAACACATTTG
387892 A
1 A
387893 TTTACTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.28, G:0.07, T:0.28
Consensus pattern (14 bp):
ACTCAACACATTTG
Found at i:392653 original size:43 final size:43
Alignment explanation
Indices: 392606--392838 Score: 274
Period size: 43 Copynumber: 5.4 Consensus size: 43
392596 GGTGATTACA
392606 AAAAGGAAGACTTATGTCTCGATTAAAGCATAAGATTATTTAT
1 AAAAGGAAGACTTATGTCTCGATTAAAGCATAAGATTATTTAT
* * *
392649 AAAAGGAAGACTTATGTCTCG-GTAAGAGCATAAGGTTATTTGT
1 AAAAGGAAGACTTATGTCTCGATTAA-AGCATAAGATTATTTAT
* * *
392692 AAATGGAAGAACTTATGTCTC-AGTTAGAGCATAAGATTGTTTAT
1 AAAAGGAAG-ACTTATGTCTCGA-TTAAAGCATAAGATTATTTAT
* *
392736 AAAAGGAAGACTTATGTCTCGGTTAAAGCATAAGATTGTTTAT
1 AAAAGGAAGACTTATGTCTCGATTAAAGCATAAGATTATTTAT
** * *
392779 AAAAGGAAGACTTATGTCTC-AGCAAGAGCATAAGGTTATTTGT
1 AAAAGGAAGACTTATGTCTCGATTAA-AGCATAAGATTATTTAT
* *
392822 AAATGTAAGAACTTATG
1 AAAAGGAAG-ACTTATG
392839 ACTTGGTTGG
Statistics
Matches: 163, Mismatches: 20, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
42 5 0.03
43 116 0.71
44 40 0.25
45 2 0.01
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.31
Consensus pattern (43 bp):
AAAAGGAAGACTTATGTCTCGATTAAAGCATAAGATTATTTAT
Found at i:392766 original size:87 final size:86
Alignment explanation
Indices: 392606--392860 Score: 316
Period size: 87 Copynumber: 2.9 Consensus size: 86
392596 GGTGATTACA
*
392606 AAAAGGAAGACTTATGTCTC-GATTAAAGCATAAGATTATTTATAAAAGGAAGACTTATGTCTCG
1 AAAAGGAAGACTTATGTCTCAG-TTAGAGCATAAGATTATTTATAAAAGGAAGACTTATGTCTCG
*
392670 G-TAAGAGCATAAGGTTATTTGT
65 GTTAA-AGCATAAGGTTATTTAT
* *
392692 AAATGGAAGAACTTATGTCTCAGTTAGAGCATAAGATTGTTTATAAAAGGAAGACTTATGTCTCG
1 AAAAGGAAG-ACTTATGTCTCAGTTAGAGCATAAGATTATTTATAAAAGGAAGACTTATGTCTCG
* *
392757 GTTAAAGCATAAGATTGTTTAT
65 GTTAAAGCATAAGGTTATTTAT
** * * * * * *
392779 AAAAGGAAGACTTATGTCTCAGCAAGAGCATAAGGTTATTTGTAAATGTAAGAACTTATGACTTG
1 AAAAGGAAGACTTATGTCTCAGTTAGAGCATAAGATTATTTATAAAAGGAAG-ACTTATGTCTCG
**
392844 GTTGGAGCATAAGGTTA
65 GTTAAAGCATAAGGTTA
392861 ATATAATTTG
Statistics
Matches: 145, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
86 44 0.30
87 97 0.67
88 4 0.03
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.31
Consensus pattern (86 bp):
AAAAGGAAGACTTATGTCTCAGTTAGAGCATAAGATTATTTATAAAAGGAAGACTTATGTCTCGG
TTAAAGCATAAGGTTATTTAT
Found at i:392852 original size:130 final size:130
Alignment explanation
Indices: 392606--392856 Score: 421
Period size: 130 Copynumber: 1.9 Consensus size: 130
392596 GGTGATTACA
*
392606 AAAAGGAAGACTTATGTCTCGATTAAAGCATAAGATTATTTATAAAAGGAAGACTTATGTCTCGG
1 AAAAGGAAGACTTATGTCTCGATTAAAGCATAAGATTATTTATAAAAGGAAGACTTATGTCTCAG
* *
392671 TAAGAGCATAAGGTTATTTGTAAATGGAAGAACTTATGTCTCAGTTAGAGCATAAGATTGTTTAT
66 CAAGAGCATAAGGTTATTTGTAAATGGAAGAACTTATGACTCAGTTAGAGCATAAGATTGTTTAT
* *
392736 AAAAGGAAGACTTATGTCTCGGTTAAAGCATAAGATTGTTTATAAAAGGAAGACTTATGTCTCAG
1 AAAAGGAAGACTTATGTCTCGATTAAAGCATAAGATTATTTATAAAAGGAAGACTTATGTCTCAG
* ** *
392801 CAAGAGCATAAGGTTATTTGTAAATGTAAGAACTTATGACTTGGTTGGAGCATAAG
66 CAAGAGCATAAGGTTATTTGTAAATGGAAGAACTTATGACTCAGTTAGAGCATAAG
392857 GTTAATATAA
Statistics
Matches: 112, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
130 112 1.00
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.31
Consensus pattern (130 bp):
AAAAGGAAGACTTATGTCTCGATTAAAGCATAAGATTATTTATAAAAGGAAGACTTATGTCTCAG
CAAGAGCATAAGGTTATTTGTAAATGGAAGAACTTATGACTCAGTTAGAGCATAAGATTGTTTAT
Found at i:394701 original size:50 final size:50
Alignment explanation
Indices: 394623--394720 Score: 151
Period size: 50 Copynumber: 2.0 Consensus size: 50
394613 ATCATCTAAT
* *
394623 TTAAGTGTCTAACCAATATGTCAGATTTGGCACCAGAATTCAAACATAAA
1 TTAAGTGTCTAACCAATATGCCAGATTTGGCACCACAATTCAAACATAAA
* * *
394673 TTAAGTGTTTAACCAATATGCCATATTTGTCACCACAATTCAAACATA
1 TTAAGTGTCTAACCAATATGCCAGATTTGGCACCACAATTCAAACATA
394721 CTCATCTACC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (50 bp):
TTAAGTGTCTAACCAATATGCCAGATTTGGCACCACAATTCAAACATAAA
Found at i:395262 original size:20 final size:20
Alignment explanation
Indices: 395220--395263 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
395210 AACTAAAATT
**
395220 AAATATAAAAATTATAGGGA
1 AAATATAAAAATTATAGAAA
395240 AAATATAAAAATTATTA-AAA
1 AAATATAAAAATTA-TAGAAA
395260 AAAT
1 AAAT
395264 TATAGTGGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (20 bp):
AAATATAAAAATTATAGAAA
Found at i:396071 original size:11 final size:10
Alignment explanation
Indices: 396055--396190 Score: 65
Period size: 9 Copynumber: 13.8 Consensus size: 10
396045 ATTTCTATAT
396055 ATTTTTAATA
1 ATTTTTAATA
396065 CATTTTT-ATA
1 -ATTTTTAATA
396075 A-TTTTAATA
1 ATTTTTAATA
* *
396084 ATTTCTATCTA
1 ATTTTTA-ATA
*
396095 TATTTTAAAT-
1 -ATTTTTAATA
*
396105 ATTTTT-CTA
1 ATTTTTAATA
396114 TATTTTT-ATA
1 -ATTTTTAATA
*
396124 AATTTTAA-A
1 ATTTTTAATA
*
396133 ATATTTTTATA
1 AT-TTTTAATA
*
396144 TATTTTTTATA
1 -ATTTTTAATA
396155 ATATTTTAAT-
1 AT-TTTTAATA
396165 ATTTTTAAT-
1 ATTTTTAATA
*
396174 GTTTTT-ATA
1 ATTTTTAATA
*
396183 TTTTTTAA
1 ATTTTTAA
396191 AATATTTTTT
Statistics
Matches: 98, Mismatches: 14, Indels: 27
0.71 0.10 0.19
Matches are distributed among these distances:
8 7 0.07
9 34 0.35
10 26 0.27
11 24 0.24
12 7 0.07
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:396079 original size:19 final size:18
Alignment explanation
Indices: 396052--396171 Score: 55
Period size: 19 Copynumber: 6.1 Consensus size: 18
396042 GTAATTTCTA
*
396052 TATATTTTTAATACATTTT
1 TATAATTTTAATA-ATTTT
396071 TATAATTTTAATAATTTCT
1 TATAATTTTAATAATTT-T
*
396090 ATCTATATTTTAA-ATATTTT
1 -TATA-ATTTTAATA-ATTTT
* *
396110 TCTATATTTTTATAAATTTT
1 TATA-ATTTTAAT-AATTTT
* * *
396130 AAAATATTTTTATATATTTTT
1 --TATAATTTTA-ATAATTTT
396151 TATAATATTTTAAT-ATTTT
1 TAT-A-ATTTTAATAATTTT
396170 TA
1 TA
396172 ATGTTTTTAT
Statistics
Matches: 79, Mismatches: 11, Indels: 22
0.71 0.10 0.20
Matches are distributed among these distances:
18 4 0.05
19 32 0.41
20 13 0.16
21 26 0.33
22 4 0.05
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
TATAATTTTAATAATTTT
Found at i:396116 original size:10 final size:10
Alignment explanation
Indices: 396045--396212 Score: 123
Period size: 10 Copynumber: 16.8 Consensus size: 10
396035 TCTTATAGTA
*
396045 ATTTCTATAT
1 ATTTTTATAT
*
396055 ATTTTTAATAC
1 ATTTTT-ATAT
396066 ATTTTTATA-
1 ATTTTTATAT
*
396075 ATTTTAATA-
1 ATTTTTATAT
* *
396084 ATTTCTATCT
1 ATTTTTATAT
*
396094 ATATTTTAAAT
1 AT-TTTTATAT
*
396105 ATTTTTCTAT
1 ATTTTTATAT
*
396115 ATTTTTATAA
1 ATTTTTATAT
* *
396125 ATTTTAAAAT
1 ATTTTTATAT
396135 ATTTTTATAT
1 ATTTTTATAT
396145 ATTTTT-TAT
1 ATTTTTATAT
396154 AATATTTTA-AT
1 -AT-TTTTATAT
396165 ATTTTTA-AT
1 ATTTTTATAT
*
396174 GTTTTTATAT
1 ATTTTTATAT
*
396184 -TTTTTAAAAT
1 ATTTTT-ATAT
*
396194 ATTTTTTTAT
1 ATTTTTATAT
396204 CATTTTTAT
1 -ATTTTTAT
396213 GCCACGTGTC
Statistics
Matches: 125, Mismatches: 23, Indels: 19
0.75 0.14 0.11
Matches are distributed among these distances:
9 35 0.28
10 56 0.45
11 34 0.27
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.63
Consensus pattern (10 bp):
ATTTTTATAT
Found at i:396128 original size:41 final size:39
Alignment explanation
Indices: 396043--396165 Score: 108
Period size: 39 Copynumber: 3.1 Consensus size: 39
396033 TATCTTATAG
396043 TAATTTCTATATATTTTTAATACATTTTTATAATTTTAA
1 TAATTTCTATATATTTTTAATACATTTTTATAATTTTAA
* * * *
396082 TAATTTCTATCTATATTTTAA-ATATTTTTCTATATTTTTA
1 TAATTTCTATATAT-TTTTAATACATTTTTATA-ATTTTAA
* *
396122 TAAATTT-TAAAATATTTTTATATA-TTTTTTATAATATTTTAA
1 T-AATTTCT-ATATATTTTTA-ATACATTTTTAT-A-ATTTTAA
396164 TA
1 TA
396166 TTTTTAATGT
Statistics
Matches: 68, Mismatches: 9, Indels: 12
0.76 0.10 0.13
Matches are distributed among these distances:
39 22 0.32
40 19 0.28
41 17 0.25
42 10 0.15
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (39 bp):
TAATTTCTATATATTTTTAATACATTTTTATAATTTTAA
Found at i:396145 original size:22 final size:22
Alignment explanation
Indices: 396116--396166 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
396106 TTTTTCTATA
396116 TTTT-TATAAATTTTAAAATAT
1 TTTTATATAAATTTTAAAATAT
** *
396137 TTTTATATATTTTTTATAATAT
1 TTTTATATAAATTTTAAAATAT
*
396159 TTTAATAT
1 TTTTATAT
396167 TTTTAATGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTTATATAAATTTTAAAATAT
Found at i:396178 original size:17 final size:17
Alignment explanation
Indices: 396053--396187 Score: 53
Period size: 19 Copynumber: 7.5 Consensus size: 17
396043 TAATTTCTAT
*
396053 ATATTTTTAATACATTTTT
1 ATATTTTTAAT--ATTTTA
*
396072 ATAATTTTAATAATTTCTA
1 ATATTTTTAAT-ATTT-TA
* *
396091 TCTATATTTTAAATATTTTTCT
1 ---ATATTTTTAATA-TTTT-A
*
396113 ATATTTTTATAAATTTTAAA
1 ATATTTTTA-ATATTTT--A
*
396133 ATATTTTT-ATATATT-
1 ATATTTTTAATATTTTA
*
396148 -T-TTTATAATATTTTA
1 ATATTTTTAATATTTTA
* *
396163 ATATTTTTAATGTTTTT
1 ATATTTTTAATATTTTA
396180 ATATTTTT
1 ATATTTTT
396188 TAAAATATTT
Statistics
Matches: 87, Mismatches: 17, Indels: 26
0.67 0.13 0.20
Matches are distributed among these distances:
13 4 0.05
14 7 0.08
16 1 0.01
17 19 0.22
18 9 0.10
19 23 0.26
20 10 0.11
21 2 0.02
22 12 0.14
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (17 bp):
ATATTTTTAATATTTTA
Found at i:396685 original size:25 final size:24
Alignment explanation
Indices: 396636--396698 Score: 63
Period size: 25 Copynumber: 2.6 Consensus size: 24
396626 GAAAATTTTA
* * * *
396636 AAATTTTTAACTTTCTTTATATAT
1 AAATTTTGAATTTTTTTTAAATAT
**
396660 ATGTTTTAGAATTTTTTTTAAATAT
1 AAATTTT-GAATTTTTTTTAAATAT
396685 AAATTTTGAATTTT
1 AAATTTTGAATTTT
396699 AGAAATTATT
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
24 12 0.40
25 18 0.60
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (24 bp):
AAATTTTGAATTTTTTTTAAATAT
Found at i:397470 original size:31 final size:30
Alignment explanation
Indices: 397433--397498 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
397423 TTAGTTATGG
*
397433 TAAAATTGTATTTTAA-CTTCTTTAAAAATAA
1 TAAAATTGTAATTTAATC-T-TTTAAAAATAA
* *
397464 TAAAATTTTAATTTAATCTTTTAAAAATTA
1 TAAAATTGTAATTTAATCTTTTAAAAATAA
397494 TAAAA
1 TAAAA
397499 ATATAGATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 15 0.48
31 15 0.48
32 1 0.03
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (30 bp):
TAAAATTGTAATTTAATCTTTTAAAAATAA
Found at i:398452 original size:12 final size:12
Alignment explanation
Indices: 398435--398550 Score: 66
Period size: 12 Copynumber: 10.2 Consensus size: 12
398425 ATAACATCCA
398435 AACAACAAAAAT
1 AACAACAAAAAT
*
398447 AACAACCAAAAT
1 AACAACAAAAAT
* *
398459 AGCAGCAAAAAT
1 AACAACAAAAAT
*
398471 AACAGC----A-
1 AACAACAAAAAT
*
398478 AACAACATTAAA-
1 AACAACA-AAAAT
398490 AACAACAAAAAT
1 AACAACAAAAAT
* *
398502 AGCAACAAAAAC
1 AACAACAAAAAT
**
398514 AGTAACAAAAAT
1 AACAACAAAAAT
**
398526 AACAGTAAAAAT
1 AACAACAAAAAT
*
398538 AAC-ACGAAAAT
1 AACAACAAAAAT
398549 AA
1 AA
398551 TCAAAACAGT
Statistics
Matches: 80, Mismatches: 18, Indels: 13
0.72 0.16 0.12
Matches are distributed among these distances:
7 5 0.06
8 1 0.01
11 10 0.12
12 64 0.80
ACGTcount: A:0.67, C:0.17, G:0.06, T:0.09
Consensus pattern (12 bp):
AACAACAAAAAT
Found at i:398494 original size:43 final size:44
Alignment explanation
Indices: 398421--398512 Score: 125
Period size: 43 Copynumber: 2.1 Consensus size: 44
398411 AAAACGCATA
* *
398421 AAAAATAACATCCAAACAACAAAAATAACAACCAAAATAGCAGC
1 AAAAATAACATCCAAACAACAAAAATAACAACAAAAATAGCAAC
* *
398465 AAAAATAACA-GCAAACAACATTAAA-AACAACAAAAATAGCAAC
1 AAAAATAACATCCAAACAACA-AAAATAACAACAAAAATAGCAAC
398508 AAAAA
1 AAAAA
398513 CAGTAACAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
43 30 0.70
44 13 0.30
ACGTcount: A:0.67, C:0.20, G:0.04, T:0.09
Consensus pattern (44 bp):
AAAAATAACATCCAAACAACAAAAATAACAACAAAAATAGCAAC
Found at i:398513 original size:21 final size:21
Alignment explanation
Indices: 398487--398625 Score: 58
Period size: 21 Copynumber: 6.7 Consensus size: 21
398477 AAACAACATT
398487 AAAAACAACAAAAATAGCAAC
1 AAAAACAACAAAAATAGCAAC
* **
398508 AAAAACAGTAACAAAAATAACAGT
1 AAAAAC---AACAAAAATAGCAAC
* *
398532 AAAAATAACACGAAAATA--ATC
1 AAAAACAACA--AAAATAGCAAC
** *
398553 -AAAACAGTAAAAA-AGCACC
1 AAAAACAACAAAAATAGCAAC
*
398572 AAAAA-AATAAAAA-AGC-AC
1 AAAAACAACAAAAATAGCAAC
* *
398590 AAAACCAACAAAAAACAGCAAC
1 AAAAACAAC-AAAAATAGCAAC
* *
398612 CAAAACAATAAAAA
1 AAAAACAACAAAAA
398626 AAAAAAACCA
Statistics
Matches: 89, Mismatches: 17, Indels: 24
0.68 0.13 0.18
Matches are distributed among these distances:
17 1 0.01
18 9 0.10
19 14 0.16
20 15 0.17
21 19 0.21
22 8 0.09
23 6 0.07
24 17 0.19
ACGTcount: A:0.70, C:0.17, G:0.06, T:0.07
Consensus pattern (21 bp):
AAAAACAACAAAAATAGCAAC
Found at i:398574 original size:19 final size:19
Alignment explanation
Indices: 398552--398626 Score: 80
Period size: 19 Copynumber: 3.8 Consensus size: 19
398542 CGAAAATAAT
*
398552 CAAAACAGTAAAAAAGCAC
1 CAAAACAATAAAAAAGCAC
*
398571 CAAAAAAATAAAAAAGCA-
1 CAAAACAATAAAAAAGCAC
*
398589 CAAAACCAACAAAAAACAGCAAC
1 CAAAA-CAA-TAAAAA-AGC-AC
398612 CAAAACAATAAAAAA
1 CAAAACAATAAAAAA
398627 AAAAAACCAA
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 5 0.11
19 18 0.39
20 6 0.13
21 8 0.17
22 4 0.09
23 5 0.11
ACGTcount: A:0.71, C:0.20, G:0.05, T:0.04
Consensus pattern (19 bp):
CAAAACAATAAAAAAGCAC
Found at i:398584 original size:28 final size:29
Alignment explanation
Indices: 398526--398584 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 29
398516 TAACAAAAAT
* * *
398526 AACAGTAAAAATAACACGAAAATAATCAA
1 AACAGTAAAAATAACACCAAAAAAATAAA
*
398555 AACAGTAAAAA-AGCACCAAAAAAATAAA
1 AACAGTAAAAATAACACCAAAAAAATAAA
398583 AA
1 AA
398585 AGCACAAAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 15 0.58
29 11 0.42
ACGTcount: A:0.69, C:0.14, G:0.07, T:0.10
Consensus pattern (29 bp):
AACAGTAAAAATAACACCAAAAAAATAAA
Found at i:398585 original size:29 final size:30
Alignment explanation
Indices: 398521--398585 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
398511 AACAGTAACA
* *
398521 AAAATAACAGTAAAAATAACACGAAAATAAT
1 AAAA-AACAGTAAAAATAACACCAAAAAAAT
* *
398552 -CAAAACAGTAAAAA-AGCACCAAAAAAAT
1 AAAAAACAGTAAAAATAACACCAAAAAAAT
398580 AAAAAA
1 AAAAAA
398586 GCACAAAACC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
28 11 0.39
29 15 0.54
30 2 0.07
ACGTcount: A:0.71, C:0.12, G:0.06, T:0.11
Consensus pattern (30 bp):
AAAAAACAGTAAAAATAACACCAAAAAAAT
Found at i:398634 original size:22 final size:22
Alignment explanation
Indices: 398573--398644 Score: 72
Period size: 22 Copynumber: 3.1 Consensus size: 22
398563 AAAAGCACCA
398573 AAAAAATAAAAAAGCACAAAACCAAC
1 AAAAAA-AAAAAA-C-CAAAA-CAAC
* ** *
398599 AAAAAACAGCAACCAAAACAAT
1 AAAAAAAAAAAACCAAAACAAC
398621 AAAAAAAAAAAACCAAAACAAC
1 AAAAAAAAAAAACCAAAACAAC
398643 AA
1 AA
398645 TATAATTTTT
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
22 23 0.61
23 5 0.13
24 1 0.03
25 3 0.08
26 6 0.16
ACGTcount: A:0.75, C:0.19, G:0.03, T:0.03
Consensus pattern (22 bp):
AAAAAAAAAAAACCAAAACAAC
Found at i:398641 original size:41 final size:40
Alignment explanation
Indices: 398552--398641 Score: 96
Period size: 41 Copynumber: 2.2 Consensus size: 40
398542 CGAAAATAAT
*
398552 CAAAACAGTAAAAAAGCACCAAAAAAATAAAAAAGCACAAAAC
1 CAAAACA--AAAAAAGCACCAAAAAAATAAAAAA-CAAAAAAC
*
398595 C--AACAAAAAACAGCAACCAAAACAATAAAAAA-AAAAAAC
1 CAAAACAAAAAA-AGC-ACCAAAAAAATAAAAAACAAAAAAC
398634 CAAAACAA
1 CAAAACAA
398642 CAATATAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
39 12 0.29
40 3 0.07
41 25 0.61
43 1 0.02
ACGTcount: A:0.72, C:0.20, G:0.04, T:0.03
Consensus pattern (40 bp):
CAAAACAAAAAAAGCACCAAAAAAATAAAAAACAAAAAAC
Found at i:409245 original size:7 final size:7
Alignment explanation
Indices: 409233--409263 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
409223 AATAAAACAA
409233 AAATAAT
1 AAATAAT
409240 AAATAAT
1 AAATAAT
*
409247 GAATAAT
1 AAATAAT
409254 AAATAAT
1 AAATAAT
409261 AAA
1 AAA
409264 AGTCATTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (7 bp):
AAATAAT
Found at i:410768 original size:24 final size:24
Alignment explanation
Indices: 410715--410768 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
410705 CTTTAAATTC
* * * *
410715 CCTTTTATTTTTTTTTATTTAGAT
1 CCTTTTATATCTTTTTAATTACAT
410739 CCTTTTATATCTTTTTAATTACAT
1 CCTTTTATATCTTTTTAATTACAT
*
410763 CTTTTT
1 CCTTTT
410769 TTCTAAAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.19, C:0.13, G:0.02, T:0.67
Consensus pattern (24 bp):
CCTTTTATATCTTTTTAATTACAT
Found at i:410890 original size:40 final size:40
Alignment explanation
Indices: 410844--410939 Score: 174
Period size: 40 Copynumber: 2.4 Consensus size: 40
410834 AAAACGCCAT
*
410844 AAAAGGTAAAGCAATATCAGCATTTTTCCATAAACGCTGC
1 AAAAGGTAAAGCAATAACAGCATTTTTCCATAAACGCTGC
*
410884 AAAAGGTAAAGCAATAACAGCGTTTTTCCATAAACGCTGC
1 AAAAGGTAAAGCAATAACAGCATTTTTCCATAAACGCTGC
410924 AAAAGGTAAAGCAATA
1 AAAAGGTAAAGCAATA
410940 GCGACATTTA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.44, C:0.18, G:0.17, T:0.22
Consensus pattern (40 bp):
AAAAGGTAAAGCAATAACAGCATTTTTCCATAAACGCTGC
Found at i:411081 original size:41 final size:41
Alignment explanation
Indices: 411000--411131 Score: 133
Period size: 41 Copynumber: 3.2 Consensus size: 41
410990 TATGGGAAAC
* * *
411000 CGTCGTTAATGCTCTGATCTTTAGCGGTGTTTTCAT-ATAAA
1 CGTCGCTAATGCTCTGACCTTTAGCGGTGCTTT-ATCATAAA
* *
411041 CGTCGCTAATGCTCTGACCTTTAGCGGCGCTATATCATAAA
1 CGTCGCTAATGCTCTGACCTTTAGCGGTGCTTTATCATAAA
* * * * *
411082 CG-CTGCTAAAGGTCAGAGCATTAGCGGTGCTTTATCATAAA
1 CGTC-GCTAATGCTCTGACCTTTAGCGGTGCTTTATCATAAA
*
411123 CGCCGCTAA
1 CGTCGCTAA
411132 AAGTCAGAGT
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
40 3 0.04
41 72 0.95
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (41 bp):
CGTCGCTAATGCTCTGACCTTTAGCGGTGCTTTATCATAAA
Found at i:411148 original size:41 final size:41
Alignment explanation
Indices: 411062--411148 Score: 120
Period size: 41 Copynumber: 2.1 Consensus size: 41
411052 CTCTGACCTT
* * *
411062 TAGCGGCGCTATATCATAAACGCTGCTAAAGGTCAGAGCAT
1 TAGCGGCGCTATATCATAAACGCCGCTAAAAGTCAGAGCAA
* * *
411103 TAGCGGTGCTTTATCATAAACGCCGCTAAAAGTCAGAGTAA
1 TAGCGGCGCTATATCATAAACGCCGCTAAAAGTCAGAGCAA
411144 TAGCG
1 TAGCG
411149 ACGTTTATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (41 bp):
TAGCGGCGCTATATCATAAACGCCGCTAAAAGTCAGAGCAA
Found at i:412465 original size:16 final size:16
Alignment explanation
Indices: 412444--412479 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
412434 ATTAAGGGAA
412444 AATTTTCATTATCTTG
1 AATTTTCATTATCTTG
412460 AATTTTCATTATCTTG
1 AATTTTCATTATCTTG
412476 AATT
1 AATT
412480 ATATTAGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.11, G:0.06, T:0.56
Consensus pattern (16 bp):
AATTTTCATTATCTTG
Found at i:419892 original size:44 final size:44
Alignment explanation
Indices: 419785--420013 Score: 189
Period size: 43 Copynumber: 5.3 Consensus size: 44
419775 ATCTGTTAAT
* * * * *
419785 TTTAGCGGCGTTTGTG-GAAAAAACGCCTCTAAAAAACAT-TATC
1 TTTAGCGGCGTTTGTGAGGAAAAGCGCCGCTAAAGACCATGT-TC
** * * * * *
419828 TACAGCGGCATTTGCG-GGAAAAGCACCGCTATAGACCATGATC
1 TTTAGCGGCGTTTGTGAGGAAAAGCGCCGCTAAAGACCATGTTC
* * * *
419871 TTTAGCAGCGTTTGTGAGG-AAAGCGTCGCTAAAGGCCATGTTT
1 TTTAGCGGCGTTTGTGAGGAAAAGCGCCGCTAAAGACCATGTTC
* * *
419914 TTTAGCGGCGTTTGT-TGGAAAAACGTCGCTAAAGACCATGTTC
1 TTTAGCGGCGTTTGTGAGGAAAAGCGCCGCTAAAGACCATGTTC
* * * * * *
419957 TTTAGCGGCGTTTGTGGGGGAAAGCCCCGTTAAAAAACATGTTC
1 TTTAGCGGCGTTTGTGAGGAAAAGCGCCGCTAAAGACCATGTTC
420001 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
420014 TTCCTCATAA
Statistics
Matches: 146, Mismatches: 36, Indels: 7
0.77 0.19 0.04
Matches are distributed among these distances:
42 2 0.01
43 109 0.75
44 35 0.24
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (44 bp):
TTTAGCGGCGTTTGTGAGGAAAAGCGCCGCTAAAGACCATGTTC
Found at i:419934 original size:86 final size:87
Alignment explanation
Indices: 419785--420013 Score: 212
Period size: 86 Copynumber: 2.7 Consensus size: 87
419775 ATCTGTTAAT
* * * * * ** * **
419785 TTTAGCGGCGTTTGTGGA-AAAAACGCCTCTAAAAAACAT-TATCTACAGCGGCATTTGCGGGAA
1 TTTAGCAGCGTTTGTGGAGGAAAGCCCCGCTAAAAAACATGT-TCTTTAGCGGCGTTTGTTGGAA
* *
419848 AAGCACCGCTATAGACCATGATC
65 AAACACCGCTAAAGACCATGATC
** *** *
419871 TTTAGCAGCGTTTGT-GAGGAAAGCGTCGCTAAAGGCCATGTTTTTTAGCGGCGTTTGTTGGAAA
1 TTTAGCAGCGTTTGTGGAGGAAAGCCCCGCTAAAAAACATGTTCTTTAGCGGCGTTTGTTGGAAA
** *
419935 AACGTCGCTAAAGACCATGTTC
66 AACACCGCTAAAGACCATGATC
* * *
419957 TTTAGCGGCGTTTGTGGGGGAAAGCCCCGTTAAAAAACATGTTCTTTAGCGGCGTTT
1 TTTAGCAGCGTTTGTGGAGGAAAGCCCCGCTAAAAAACATGTTCTTTAGCGGCGTTT
420014 TTCCTCATAA
Statistics
Matches: 112, Mismatches: 28, Indels: 5
0.77 0.19 0.03
Matches are distributed among these distances:
85 2 0.02
86 76 0.68
87 34 0.30
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (87 bp):
TTTAGCAGCGTTTGTGGAGGAAAGCCCCGCTAAAAAACATGTTCTTTAGCGGCGTTTGTTGGAAA
AACACCGCTAAAGACCATGATC
Found at i:420181 original size:8 final size:8
Alignment explanation
Indices: 420168--420206 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
420158 GCGATTTACA
420168 TTTATTTG
1 TTTATTTG
420176 TTTATTTG
1 TTTATTTG
* *
420184 TATTGTTGG
1 T-TTATTTG
420193 TTTATTTG
1 TTTATTTG
420201 TTTATT
1 TTTATT
420207 ATTTGTGCCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
8 20 0.77
9 6 0.23
ACGTcount: A:0.13, C:0.00, G:0.15, T:0.72
Consensus pattern (8 bp):
TTTATTTG
Found at i:421897 original size:2 final size:2
Alignment explanation
Indices: 421890--421919 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
421880 TATAAAATTT
421890 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Done.