Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012456.1 Kokia drynarioides strain JFW-HI SEQ_127460, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7720
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.32

Warning! 14 characters in sequence are not A, C, G, or T


Found at i:5587 original size:15 final size:15

Alignment explanation


    Indices: 5548--5577  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       5538 ATAACTAAAG

                           
       5548 AAAAAATAGATAGAT
          1 AAAAAATAGATAGAT

                           
       5563 AAAAAATAGATAGAT
          1 AAAAAATAGATAGAT

       5578 GAGAGATAGA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.67, C:0.00, G:0.13, T:0.20


Consensus pattern (15 bp):   
AAAAAATAGATAGAT
Done.