genome.fa.s12458.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012458.1 Kokia drynarioides strain JFW-HI SEQ_127462, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  182651

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10800--10871	36	2.1	35	92	5	119	44	2	1	51	1.24
14044--14097	14	3.9	14	76	9	56	27	1	25	44	1.64
14083--14141	28	2.1	28	87	6	84	25	5	23	45	1.73
14102--14141	21	1.9	21	85	10	55	25	2	25	47	1.64
14515--14550	6	6.0	6	93	0	54	0	38	33	27	1.57
16318--16371	23	2.6	21	82	11	58	35	31	20	12	1.90
16360--16436	23	3.3	23	89	3	111	40	22	27	10	1.86
19261--19290	5	5.8	5	96	4	51	80	0	0	20	0.72
19336--19418	30	2.7	32	76	14	84	68	7	0	24	1.14
19632--19690	4	14.2	4	82	7	73	5	18	0	76	0.97
19635--19687	21	2.5	21	87	6	72	5	16	0	77	0.96
19632--19690	25	2.4	25	97	0	109	5	18	0	76	0.97
35406--35444	20	2.0	20	84	0	51	30	25	7	35	1.84
36415--36445	7	4.4	7	100	0	62	25	0	74	0	0.82
45029--45061	17	1.9	17	88	11	50	75	0	6	18	1.00
53940--54075	69	2.0	69	97	0	254	41	19	13	26	1.88
61044--61094	19	2.7	18	77	14	50	64	0	1	33	1.05
61195--61236	3	13.7	3	83	14	50	71	0	28	0	0.86
61385--61452	30	2.3	30	85	10	86	44	4	2	48	1.38
65767--65809	21	2.0	21	82	8	52	65	2	4	27	1.25
75469--75509	20	2.1	20	90	4	66	36	0	2	60	1.10
75468--75510	19	2.3	19	84	8	61	39	0	2	58	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76005--76032	11	2.5	11	100	0	56	75	0	0	25	0.81
76200--76265	24	2.8	24	92	0	114	68	16	7	7	1.37
76200--76263	12	5.3	12	86	0	92	68	17	7	6	1.35
76200--76271	12	6.0	12	86	0	90	68	18	6	6	1.36
76187--76289	36	2.8	36	79	7	111	68	16	6	7	1.35
76248--76314	27	2.5	26	76	4	71	71	14	4	8	1.27
76287--76348	22	2.8	22	73	9	63	69	14	6	9	1.35
84385--84822	219	2.0	220	98	0	851	45	10	16	27	1.80
84723--84920	98	2.0	98	99	0	387	43	12	15	28	1.82
88546--88578	2	16.5	2	100	0	66	51	0	0	48	1.00
96743--96809	31	2.2	30	81	5	73	29	16	8	44	1.78
99094--99192	38	2.5	41	72	11	98	29	28	20	22	1.98
99295--99341	18	2.6	18	82	0	58	23	31	0	44	1.54
99311--99339	6	4.8	6	100	0	58	17	31	0	51	1.45
101125--101201	20	3.9	18	74	17	57	45	7	3	42	1.51
101375--101437	32	1.9	33	84	9	85	42	14	4	38	1.66
101407--101480	20	3.7	19	76	7	67	36	12	8	43	1.72
101407--101526	60	2.0	61	80	4	136	39	11	7	41	1.70
102677--102752	38	2.0	38	84	0	98	23	13	14	48	1.79
108232--108286	28	2.0	26	86	6	74	23	10	10	54	1.67
108782--108828	23	2.0	23	100	0	94	25	4	17	53	1.62
134956--134984	5	5.8	5	100	0	58	0	58	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135271--135308	15	2.4	16	86	4	51	39	2	0	57	1.12
135296--135362	30	2.2	32	86	5	93	44	1	2	50	1.26
147700--147739	20	2.0	20	85	9	55	62	0	0	37	0.95
147700--147764	21	3.1	21	78	10	62	60	0	0	40	0.97
150311--150516	24	8.3	24	68	16	107	28	38	7	25	1.84
150350--150442	27	3.6	27	68	24	81	24	41	6	26	1.79
150326--150512	51	3.8	49	90	2	250	27	40	7	25	1.82
150500--150787	33	9.5	33	70	19	216	30	36	11	22	1.89
150326--150905	57	10.4	57	84	7	535	29	37	10	23	1.87
150557--150850	90	3.3	88	69	17	226	29	36	11	22	1.90
150707--150988	147	1.9	147	80	2	325	27	39	10	21	1.87
150475--150940	180	2.6	177	83	6	509	28	36	11	22	1.89
150794--151022	90	2.5	90	90	2	318	24	41	11	22	1.87
150878--151005	33	4.2	32	64	22	76	25	41	11	21	1.87
151041--151076	18	2.0	18	89	10	56	22	47	5	25	1.73
151084--151266	60	3.0	60	94	1	314	19	48	6	25	1.71
151652--151707	28	2.0	28	100	0	112	32	25	7	35	1.83
159280--159354	3	25.0	3	100	0	150	66	0	0	33	0.92
159998--160047	24	2.1	24	96	0	91	44	22	16	18	1.87
160710--160747	11	3.5	11	82	10	51	73	2	0	23	0.95
161661--161692	6	5.3	6	100	0	64	15	34	0	50	1.45
162005--162030	5	5.2	5	100	0	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165538--165573	18	1.9	19	88	5	56	27	16	11	44	1.82
168396--168445	25	2.0	25	84	7	66	14	30	16	40	1.87
168404--168457	25	2.2	25	86	3	74	12	29	16	40	1.86
169402--169457	29	2.0	28	85	3	76	37	1	5	55	1.33
169521--169550	15	2.1	15	93	6	53	53	20	6	20	1.67
170145--170190	24	2.0	23	84	12	60	50	2	6	41	1.40
170170--170199	16	1.9	16	93	6	53	50	0	3	46	1.18
170185--170230	19	2.3	21	92	7	78	54	0	0	45	0.99
171210--171480	29	9.2	29	79	5	258	35	25	2	36	1.70
171210--171489	59	4.7	58	80	6	239	35	25	2	37	1.71
171210--171462	30	8.6	29	78	7	242	34	26	2	36	1.71
171385--171580	58	3.4	57	75	9	191	33	25	4	36	1.77
180104--181092	205	4.8	205	88	0	1395	35	18	22	23	1.96
180941--181314	119	3.1	118	85	2	507	35	20	21	23	1.96
181299--181369	37	1.9	37	85	0	97	39	21	21	18	1.93
181770--181834	6	10.7	6	70	9	51	38	3	1	56	1.24
181770--181834	20	3.6	18	82	12	78	38	3	1	56	1.24
181899--181928	15	2.1	15	93	6	53	53	20	6	20	1.67
182577--182622	24	2.0	23	84	12	60	50	2	6	41	1.40
182602--182631	16	1.9	16	93	6	53	50	0	3	46	1.18

Tables:   1

The End!