Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012471.1 Kokia drynarioides strain JFW-HI SEQ_127475, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6739
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34


Found at i:459 original size:15 final size:16

Alignment explanation


    Indices: 439--470  Score: 57
    Period size: 15  Copynumber: 2.1  Consensus size: 16

        429 CAATTGGTCC

                            
        439 TGGTTCTGGTT-TAGT
          1 TGGTTCTGGTTCTAGT

                            
        454 TGGTTCTGGTTCTAGT
          1 TGGTTCTGGTTCTAGT

             
        470 T
          1 T

        471 CTGGCAAAGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15   11  0.69
  16    5  0.31

ACGTcount: A:0.06, C:0.09, G:0.31, T:0.53


Consensus pattern (16 bp):   
TGGTTCTGGTTCTAGT
Done.