genome.fa.s12474.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012474.1 Kokia drynarioides strain JFW-HI SEQ_127478, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  393988

Tables:   1   2   

This is table  1  of  2  ( 130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78--170	42	2.2	42	80	12	104	52	3	5	38	1.40
127--170	13	3.5	13	87	3	54	56	2	2	38	1.24
367--414	24	2.0	24	100	0	96	50	12	12	25	1.75
6201--6229	14	2.0	15	93	6	51	13	6	0	79	0.93
10106--10143	6	6.3	6	100	0	76	0	50	15	34	1.45
19353--19394	22	1.9	22	85	0	57	21	28	9	40	1.84
27211--27248	3	12.7	3	100	0	76	68	0	0	31	0.90
32784--32828	18	2.6	17	82	6	54	35	2	0	62	1.08
43255--43370	57	2.0	57	96	0	214	41	17	3	37	1.66
43515--43555	19	2.1	19	86	13	57	48	17	4	29	1.67
45794--45844	21	2.4	21	96	0	93	27	13	27	31	1.94
47247--47315	31	2.3	29	85	9	95	24	13	1	60	1.41
47310--47354	19	2.3	20	84	3	56	15	11	4	68	1.34
47572--47770	110	1.8	110	86	2	292	31	13	16	39	1.87
49789--49885	44	2.2	44	94	0	167	28	21	22	26	1.99
55604--55643	20	2.0	20	95	0	71	27	0	0	72	0.85
64257--64296	18	2.3	18	86	4	55	20	12	10	57	1.63
66292--66390	46	2.2	46	94	0	171	26	24	5	44	1.74
73945--74000	26	2.2	26	96	0	103	39	3	28	28	1.73
74941--74985	24	1.9	24	86	4	65	55	6	15	22	1.63
80404--80713	154	2.0	155	93	2	536	39	4	37	18	1.71
89218--89264	21	2.3	21	85	3	69	27	0	2	70	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92308--92360	22	2.3	23	83	3	63	66	5	9	18	1.41
95725--95830	52	2.0	52	98	0	203	24	19	15	40	1.90
96994--97087	41	2.3	41	96	0	170	37	27	6	28	1.81
102865--102898	18	1.9	18	88	5	52	29	0	5	64	1.17
103027--103071	24	1.9	24	86	13	67	71	0	0	28	0.87
106400--106460	28	2.2	26	82	8	68	27	9	6	55	1.57
106441--106501	31	2.0	31	83	6	79	29	19	6	44	1.76
107622--108000	133	2.9	133	93	1	647	30	18	7	44	1.77
107979--108008	2	15.0	2	100	0	60	0	50	0	50	1.00
111479--111529	24	2.1	24	88	0	75	60	9	5	23	1.50
123372--123445	26	2.8	26	89	2	103	28	8	20	43	1.80
123458--123509	27	1.9	27	88	7	79	25	19	15	40	1.90
123660--123726	27	2.5	26	80	4	73	23	17	19	38	1.93
126236--126411	90	2.0	88	94	3	309	49	11	11	27	1.73
126618--126680	30	2.1	30	82	5	74	49	3	0	47	1.17
126649--126713	23	2.9	22	84	4	85	44	0	3	52	1.16
132492--132561	28	2.7	26	80	8	79	24	10	7	58	1.55
132555--132635	31	2.6	32	84	9	96	37	16	9	37	1.81
135767--135796	15	2.1	15	93	6	53	56	0	0	43	0.99
136467--136535	23	3.0	23	80	2	84	46	17	26	10	1.79
153429--153460	16	2.0	16	93	0	55	53	3	18	25	1.59
160097--160174	37	2.1	37	85	4	104	43	12	1	42	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160474--160512	20	2.0	19	95	5	69	30	17	5	46	1.70
171860--171932	29	2.4	30	84	11	96	47	1	16	34	1.55
173501--173535	11	3.4	11	84	15	56	48	0	0	51	1.00
177142--177266	36	3.5	36	92	2	198	21	26	12	39	1.89
184493--184593	36	2.8	36	84	0	139	18	24	17	38	1.93
187202--187289	44	2.0	44	82	6	106	51	1	20	27	1.55
189030--189068	6	6.5	6	87	0	51	46	0	30	23	1.53
191298--191325	3	9.3	3	100	0	56	67	0	0	32	0.91
196749--196814	30	2.2	29	86	7	89	54	9	4	31	1.52
196760--196818	29	2.0	30	93	3	102	54	11	3	30	1.53
196760--196839	29	2.7	29	84	5	88	52	10	3	33	1.53
202610--202693	41	2.0	41	97	0	159	40	7	27	25	1.81
204825--204952	59	2.2	59	84	2	159	22	10	17	50	1.76
204886--205019	67	2.0	66	86	4	189	22	10	15	51	1.74
205005--205262	59	4.4	59	75	6	211	24	13	12	49	1.77
204952--205262	118	2.6	118	78	6	303	24	14	12	48	1.78
208782--208830	18	2.7	18	84	6	64	36	0	14	48	1.44
208814--208907	45	2.2	44	84	9	122	34	3	10	52	1.52
208945--208981	17	2.2	17	90	0	56	32	5	10	51	1.60
212349--212378	15	2.0	15	93	0	51	73	3	0	23	0.98
212399--212441	19	2.3	19	88	8	61	60	4	0	34	1.17
213012--213049	18	2.0	20	85	10	53	42	0	2	55	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215144--215169	2	13.0	2	100	0	52	50	0	50	0	1.00
216108--216136	3	9.7	3	100	0	58	68	0	31	0	0.89
228739--228816	39	2.0	39	89	0	120	51	10	11	26	1.70
248218--248252	5	7.0	5	90	0	52	60	5	0	34	1.21
249520--249584	29	2.2	29	83	2	76	49	12	15	23	1.78
265907--266350	57	7.8	57	84	1	516	32	18	13	35	1.90
265933--266350	28	14.7	29	63	15	113	31	19	13	35	1.90
268335--268539	108	1.9	108	98	0	401	25	11	23	39	1.89
278936--279028	25	3.7	25	89	2	134	24	18	25	31	1.98
286315--286362	14	3.0	17	82	17	75	37	4	18	39	1.70
288914--288950	18	2.1	18	90	10	58	32	5	13	48	1.65
293431--293467	3	12.3	3	100	0	74	32	0	0	67	0.91
293565--293602	15	2.6	15	87	4	51	39	0	0	60	0.97
298367--298515	42	3.5	42	80	3	149	21	15	21	41	1.90
299973--300031	30	2.0	30	83	12	77	45	3	3	47	1.36
300700--300786	29	3.0	28	83	8	86	51	1	0	47	1.08
300714--300774	11	5.9	11	79	13	60	49	0	0	50	1.00
300696--300786	20	4.6	20	75	16	73	52	1	0	46	1.07
300724--300796	31	2.3	31	79	9	85	46	1	0	52	1.09
300903--301094	98	2.0	98	91	2	314	21	27	8	42	1.82
301728--301798	11	6.9	11	74	18	64	49	0	0	50	1.00
301698--301792	39	2.4	41	89	6	144	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301710--301798	20	4.4	19	73	23	67	48	0	0	51	1.00
306117--306152	16	2.1	18	90	10	58	61	5	2	30	1.33
306138--306185	24	2.0	25	83	4	62	62	2	4	31	1.26
306201--306247	21	2.2	21	85	7	60	29	10	6	53	1.60
306823--306876	27	2.0	27	82	10	65	57	3	7	31	1.44
308309--308445	58	2.4	57	87	4	204	52	1	0	45	1.09
308364--308445	29	2.9	26	73	16	56	48	2	0	48	1.14
308417--308455	17	2.3	17	86	0	51	43	2	0	53	1.14
319488--319756	140	1.9	140	93	3	461	39	17	5	38	1.72
320839--321023	30	6.3	29	75	10	133	40	19	2	37	1.66
323095--323302	29	7.2	29	66	10	93	30	16	17	34	1.93
323083--323302	58	3.8	58	77	5	194	31	16	17	34	1.93
323286--323336	15	3.4	15	97	0	93	37	13	11	37	1.82
329033--329097	31	2.1	30	83	8	78	38	15	3	43	1.62
329043--329197	29	5.2	30	77	8	140	36	20	4	38	1.73
329388--329608	30	7.6	29	77	11	195	36	22	6	34	1.81
333850--333922	33	2.4	31	79	20	82	50	1	0	47	1.09
342826--342913	26	3.3	26	72	21	76	57	1	2	38	1.18
342838--342872	17	2.1	16	89	5	52	62	0	2	34	1.10
344459--344490	2	16.0	2	100	0	64	0	50	0	50	1.00
349050--349099	5	10.0	5	80	0	55	36	16	6	42	1.72
349466--349601	68	2.0	68	95	0	245	49	19	3	27	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352441--352479	21	1.9	20	84	5	51	38	15	0	46	1.46
353203--353250	12	3.5	13	86	13	62	4	27	0	68	1.07
353212--353262	12	3.9	12	87	10	57	3	25	0	70	1.04
353218--353260	15	2.6	16	82	13	52	2	23	0	74	0.93
359331--359373	18	2.4	18	76	0	50	30	13	16	39	1.87
361758--361949	73	2.6	73	81	4	210	27	22	28	21	1.99
362046--362171	39	3.2	39	86	0	171	37	20	16	25	1.93
362034--362180	78	1.9	78	86	0	213	38	20	15	25	1.92
362046--362257	39	5.5	39	76	6	162	38	20	17	23	1.93
363192--363231	20	2.0	21	90	5	64	52	0	0	47	1.00

Tables:   1   2