Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012475.1 Kokia drynarioides strain JFW-HI SEQ_127479, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2653
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.33

Warning! 35 characters in sequence are not A, C, G, or T


Found at i:1364 original size:20 final size:20

Alignment explanation


    Indices: 1328--1365  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1318 AACATAATCT

                        *       
       1328 TAAACATTAAATCTAAAATA
          1 TAAACATTAAATATAAAATA

                               
       1348 TAAACA-TATAATATAAAA
          1 TAAACATTA-AATATAAAA

       1366 ATTATTATTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 2
        0.84            0.05        0.11

Matches are distributed among these distances:
  19    2  0.12
  20   14  0.88

ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29


Consensus pattern (20 bp):   
TAAACATTAAATATAAAATA

Found at i:2444 original size:28 final size:28

Alignment explanation


    Indices: 2404--2461  Score: 91
    Period size: 28  Copynumber: 2.1  Consensus size: 28

       2394 ATACGGAACA

                    *                    
       2404 AACTCGTCTAGCACCGAAGTGCTG-TAAT
          1 AACTCGTCCAGCACCGAAGTGC-GATAAT

                                        
       2432 AACTCGTCCAGCACCGAAGTGCGATAAT
          1 AACTCGTCCAGCACCGAAGTGCGATAAT

              
       2460 AA
          1 AA

       2462 GCGTGCAGAG


Statistics
Matches: 28,  Mismatches: 1, Indels: 2
        0.90            0.03        0.06

Matches are distributed among these distances:
  27    1  0.04
  28   27  0.96

ACGTcount: A:0.33, C:0.26, G:0.21, T:0.21


Consensus pattern (28 bp):   
AACTCGTCCAGCACCGAAGTGCGATAAT
Done.