Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012476.1 Kokia drynarioides strain JFW-HI SEQ_127480, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11229
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32


Found at i:997 original size:345 final size:345

Alignment explanation


    Indices: 366--1057  Score: 1357
    Period size: 345  Copynumber: 2.0  Consensus size: 345

        356 TCATGCTATT

                                                                             
        366 CAGTCTTATTTTATTAAAGAATTTCACTCCACACGTCATAAATCGTCATTTGATTAAAAACACAA
          1 CAGTCTTATTTTATTAAAGAATTTCACTCCACACGTCATAAATCGTCATTTGATTAAAAACACAA

                                                                             
        431 TTCAACAGGGGTAAAAAGGTTAATTTTGACATTTTTGGAGACTTTTACTGGTACTTGTTGGACAA
         66 TTCAACAGGGGTAAAAAGGTTAATTTTGACATTTTTGGAGACTTTTACTGGTACTTGTTGGACAA

                                                                             
        496 CTGTCGGTAGTTGTCAAGTCAGTAAATAGTTCAGGAATAGTACAGACTTCTACCGATACAAGTGA
        131 CTGTCGGTAGTTGTCAAGTCAGTAAATAGTTCAGGAATAGTACAGACTTCTACCGATACAAGTGA

                    *                                                        
        561 CTCTTCTAGCGAAACAAGTCTTACTTTTACCGATATTAAAAACTTTAAGGAGCTAAAGGTCTCAC
        196 CTCTTCTACCGAAACAAGTCTTACTTTTACCGATATTAAAAACTTTAAGGAGCTAAAGGTCTCAC

                                                                             
        626 CCTGAAAATTCTACCGATACAAGTATACAAACTACCAATACCTTTAAACACATAACTACCGATAC
        261 CCTGAAAATTCTACCGATACAAGTATACAAACTACCAATACCTTTAAACACATAACTACCGATAC

                                
        691 TTGCTATTCAACTACCGATA
        326 TTGCTATTCAACTACCGATA

                                                                             
        711 CAGTCTTATTTTATTAAAGAATTTCACTCCACACGTCATAAATCGTCATTTGATTAAAAACACAA
          1 CAGTCTTATTTTATTAAAGAATTTCACTCCACACGTCATAAATCGTCATTTGATTAAAAACACAA

                                                                             
        776 TTCAACAGGGGTAAAAAGGTTAATTTTGACATTTTTGGAGACTTTTACTGGTACTTGTTGGACAA
         66 TTCAACAGGGGTAAAAAGGTTAATTTTGACATTTTTGGAGACTTTTACTGGTACTTGTTGGACAA

                                                                             
        841 CTGTCGGTAGTTGTCAAGTCAGTAAATAGTTCAGGAATAGTACAGACTTCTACCGATACAAGTGA
        131 CTGTCGGTAGTTGTCAAGTCAGTAAATAGTTCAGGAATAGTACAGACTTCTACCGATACAAGTGA

                                                                             
        906 CTCTTCTACCGAAACAAGTCTTACTTTTACCGATATTAAAAACTTTAAGGAGCTAAAGGTCTCAC
        196 CTCTTCTACCGAAACAAGTCTTACTTTTACCGATATTAAAAACTTTAAGGAGCTAAAGGTCTCAC

                *                                    *                       
        971 CCTGCAAATTCTACCGATACAAGTATACAAACTACCAATACTTTTAAACACATAACTACCGATAC
        261 CCTGAAAATTCTACCGATACAAGTATACAAACTACCAATACCTTTAAACACATAACTACCGATAC

                                
       1036 TTGCTATTCAACTACCGATA
        326 TTGCTATTCAACTACCGATA

              
       1056 CA
          1 CA

       1058 ACCCAAGTCA


Statistics
Matches: 344,  Mismatches: 3, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 345  344  1.00

ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31


Consensus pattern (345 bp):   
CAGTCTTATTTTATTAAAGAATTTCACTCCACACGTCATAAATCGTCATTTGATTAAAAACACAA
TTCAACAGGGGTAAAAAGGTTAATTTTGACATTTTTGGAGACTTTTACTGGTACTTGTTGGACAA
CTGTCGGTAGTTGTCAAGTCAGTAAATAGTTCAGGAATAGTACAGACTTCTACCGATACAAGTGA
CTCTTCTACCGAAACAAGTCTTACTTTTACCGATATTAAAAACTTTAAGGAGCTAAAGGTCTCAC
CCTGAAAATTCTACCGATACAAGTATACAAACTACCAATACCTTTAAACACATAACTACCGATAC
TTGCTATTCAACTACCGATA
Done.