genome.fa.s12477.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012477.1 Kokia drynarioides strain JFW-HI SEQ_127481, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96994

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24--139	6	20.0	6	66	19	59	52	2	1	43	1.25
63--139	17	4.5	17	86	4	111	55	2	0	41	1.13
46--94	23	2.1	23	88	11	73	53	4	2	40	1.32
63--139	34	2.3	34	97	0	145	55	2	0	41	1.13
1359--1681	30	11.0	30	69	13	134	38	3	25	32	1.74
1387--1677	59	5.0	59	75	6	218	39	3	24	32	1.73
1515--1672	29	5.5	29	74	10	164	35	3	27	33	1.73
1481--1672	29	6.6	29	75	12	153	37	3	26	32	1.72
2349--2430	3	26.0	3	78	11	58	32	0	6	60	1.21
3109--3218	17	6.4	17	83	7	134	52	1	0	44	1.17
3109--3218	6	19.2	6	70	22	76	52	1	0	44	1.17
3112--3199	29	3.3	28	69	23	73	52	1	1	45	1.15
3129--3222	11	8.3	11	73	10	57	55	2	1	41	1.19
3330--3398	31	2.2	32	92	5	113	39	7	7	46	1.59
3528--3814	143	2.0	143	99	0	565	39	15	11	33	1.83
4129--4167	20	1.9	20	84	5	51	7	17	2	71	1.21
4604--5040	123	3.6	121	80	6	388	26	13	32	27	1.94
4838--5046	116	1.8	116	87	2	312	26	13	32	27	1.94
5163--5345	91	2.0	91	96	0	339	30	9	18	41	1.82
8752--8796	22	2.0	22	100	0	90	42	26	8	22	1.83
8677--8958	98	2.9	98	97	0	530	37	21	7	32	1.82
10452--10884	147	2.9	147	93	2	728	27	24	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23215--23764	99	5.7	98	76	8	394	35	14	29	20	1.92
23319--23596	50	5.7	48	71	9	179	34	12	31	20	1.91
23215--23764	97	5.7	98	77	7	412	35	14	29	20	1.92
23375--23611	49	4.8	50	72	11	200	32	13	31	21	1.92
24450--24890	122	3.6	122	79	6	464	40	16	20	22	1.91
30683--30861	88	2.0	88	97	0	340	40	8	20	30	1.83
31672--31701	13	2.3	13	100	0	60	20	33	26	20	1.97
32447--32525	41	1.9	41	92	0	131	30	10	21	37	1.86
32866--32909	22	2.0	22	86	0	61	61	13	0	25	1.32
34376--34439	29	2.2	29	80	5	76	62	3	6	28	1.34
35809--36636	49	17.1	48	70	8	376	20	21	17	41	1.91
35807--36548	98	7.7	98	76	5	648	19	21	17	40	1.91
35808--36635	196	4.3	196	78	7	778	19	21	17	41	1.91
36242--36326	41	2.1	41	97	0	161	24	16	16	42	1.88
37726--37769	12	3.7	12	81	0	52	0	15	2	81	0.78
45167--45241	29	2.6	29	79	8	91	61	5	2	30	1.32
45500--45524	10	2.5	10	100	0	50	68	0	12	20	1.21
45631--45672	15	2.8	15	82	10	50	73	7	2	16	1.15
45854--45883	10	3.0	10	100	0	60	80	0	20	0	0.72
60122--60155	10	3.6	9	88	11	50	85	0	14	0	0.60
61646--61700	18	3.5	16	75	18	53	81	1	14	1	0.85
61644--61700	13	4.5	12	80	8	60	80	1	15	1	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61655--61700	6	7.3	6	83	13	58	82	2	13	2	0.85
62727--62891	50	3.3	50	78	6	138	35	19	22	22	1.96
62899--63415	49	10.5	49	84	2	527	38	13	26	21	1.91
63909--63968	18	3.2	20	82	13	65	76	5	15	3	1.08
65922--66110	30	6.4	30	75	4	159	37	3	25	33	1.72
65923--66110	59	3.2	59	84	0	250	36	3	26	34	1.72
67691--67723	17	1.9	17	93	0	57	60	3	3	33	1.27
67757--67799	21	2.0	21	95	0	77	34	23	16	25	1.95
68102--68645	172	3.1	172	86	2	705	22	22	16	39	1.92
69750--69855	41	2.5	41	80	6	106	15	24	16	43	1.87
80754--80951	30	6.7	30	80	7	201	35	1	24	37	1.65
80755--80951	59	3.3	59	83	6	231	36	1	24	37	1.65
87421--87469	7	7.0	7	81	9	55	51	0	4	44	1.20
88096--88128	15	2.2	15	89	10	50	21	0	0	78	0.75
88679--88716	15	2.6	14	91	4	58	15	23	10	50	1.75
88888--89149	30	8.8	29	75	7	150	34	25	5	33	1.80
88899--89031	30	4.5	29	84	3	167	35	21	7	36	1.81
88882--89031	59	2.5	60	83	5	189	36	21	6	36	1.80
88899--89061	89	1.8	89	82	2	211	34	23	7	34	1.83
88882--89091	89	2.4	90	78	4	210	36	23	5	34	1.79
91254--91315	5	12.0	5	77	16	56	77	1	19	1	0.94
91241--91317	26	3.0	24	78	12	73	76	1	20	1	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91254--91316	20	3.0	20	78	15	65	77	1	19	1	0.93
92490--93538	123	8.5	122	84	3	1230	39	18	20	21	1.93
95238--95455	30	7.4	29	82	3	247	34	20	4	40	1.73
95238--95478	59	4.1	60	83	3	294	34	21	4	39	1.72
95238--95478	29	8.2	30	80	5	242	34	21	4	39	1.72
95238--95544	29	10.4	29	72	11	187	33	21	4	40	1.74
96529--96618	6	15.5	6	73	11	80	44	0	3	52	1.17
96497--96604	17	6.2	17	86	6	137	41	0	4	53	1.21
96497--96637	17	8.5	17	77	14	100	43	0	4	52	1.20

Tables:   1

The End!