Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012479.1 Kokia drynarioides strain JFW-HI SEQ_127483, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3167
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.31

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:1205 original size:25 final size:25

Alignment explanation


    Indices: 1146--1195  Score: 82
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1136 ATCAACTAAT

                *        *           
       1146 CAGACTTTAAGTGTGAAATTAAAAA
          1 CAGAATTTAAGTGAGAAATTAAAAA

                                     
       1171 CAGAATTTAAGTGAGAAATTAAAAA
          1 CAGAATTTAAGTGAGAAATTAAAAA

       1196 TAATGTTTAA


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  25   23  1.00

ACGTcount: A:0.52, C:0.06, G:0.16, T:0.26


Consensus pattern (25 bp):   
CAGAATTTAAGTGAGAAATTAAAAA
Done.