Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012483.1 Kokia drynarioides strain JFW-HI SEQ_127487, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3388
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31


Found at i:72 original size:12 final size:12

Alignment explanation


    Indices: 64--88  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

         54 CAGAATTATT

                        
         64 ATAAGAATTACC
          1 ATAAGAATTACC

                        
         76 ATAAGAATTACC
          1 ATAAGAATTACC

             
         88 A
          1 A

         89 CGGATGTTAT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.52, C:0.16, G:0.08, T:0.24


Consensus pattern (12 bp):   
ATAAGAATTACC
Done.