Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012488.1 Kokia drynarioides strain JFW-HI SEQ_127492, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3100
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.35


Found at i:2041 original size:35 final size:35

Alignment explanation


    Indices: 2001--2078  Score: 156
    Period size: 35  Copynumber: 2.2  Consensus size: 35

       1991 TATACATCAC

                                               
       2001 TTTCATTCCATATCAATATCAAATCAATTTAACCA
          1 TTTCATTCCATATCAATATCAAATCAATTTAACCA

                                               
       2036 TTTCATTCCATATCAATATCAAATCAATTTAACCA
          1 TTTCATTCCATATCAATATCAAATCAATTTAACCA

                    
       2071 TTTCATTC
          1 TTTCATTC

       2079 TCATTTCTCA


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   43  1.00

ACGTcount: A:0.37, C:0.23, G:0.00, T:0.40


Consensus pattern (35 bp):   
TTTCATTCCATATCAATATCAAATCAATTTAACCA
Done.