Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012489.1 Kokia drynarioides strain JFW-HI SEQ_127493, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 183384
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Warning! 36 characters in sequence are not A, C, G, or T
Found at i:382 original size:217 final size:217
Alignment explanation
Indices: 1--405 Score: 519
Period size: 217 Copynumber: 1.9 Consensus size: 217
* * * * * * * *
1 GCATGGAATGTTCGGAATACTGCTCGAAGGAATGGATCATCTTGCATACTTTAAGGAACTGAAGT
1 GCATGGAATATTCGCAAAACTGCTCAAAGAAATGGATCATCTTGAATACTTTAAGGAACCGAACT
* * * * *
66 TATAAAAGAAATAGTAAAAGCTTGACAAGTTTAGAAGTTTGTCTAAGAATCAAAAGAGAAATAAT
66 TATAAAAGAAATAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAAAGAGAAACAAT
* *
131 TCTCACATAAATATATTATTAATTCAAAGACCAAAAAG-TTGTTTGCAAAATGACAAACAATTTA
131 TCTCACATAAATATAGTATTAATTCAAAGACC-AAAAGTTTGTTTACAAAATGACAAACAATTTA
195 GACCAAGTGATGCAATTTCTCGA
195 GACCAAGTGATGCAATTTCTCGA
*
218 GCATGGAATATTCGCAAAATTGCTCAAAGAAATGGATCATCTTGAATACTTTAAGGAACCGAACT
1 GCATGGAATATTCGCAAAACTGCTCAAAGAAATGGATCATCTTGAATACTTTAAGGAACCGAACT
* * ** * * *
283 TATAACAGAAATAGTAAAAGTTTTCCTAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
66 TATAAAAGAAATAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAAAGAGAAACAAT
* * * *
348 T-TACATATAAATA-AGTATTTAATTCAATGACCAAAAGTTTTTTTACAAAATGGCAAAC
131 TCT-CACATAAATATAGTA-TTAATTCAAAGACCAAAAGTTTGTTTACAAAATGACAAAC
406 TTGTTTGACC
Statistics
Matches: 158, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
216 9 0.06
217 149 0.94
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.28
Consensus pattern (217 bp):
GCATGGAATATTCGCAAAACTGCTCAAAGAAATGGATCATCTTGAATACTTTAAGGAACCGAACT
TATAAAAGAAATAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAAAGAGAAACAAT
TCTCACATAAATATAGTATTAATTCAAAGACCAAAAGTTTGTTTACAAAATGACAAACAATTTAG
ACCAAGTGATGCAATTTCTCGA
Found at i:573 original size:174 final size:173
Alignment explanation
Indices: 252--573 Score: 404
Period size: 175 Copynumber: 1.9 Consensus size: 173
242 CAAAGAAATG
* ** * *
252 GATCATCTTGAATACTTTAAGGAACCGAACTTATAACAGAAATAGTAAAAGTTTTCCTAGTTCGG
1 GATCATCTTGAATACTTTAAGGAACCGAACTTATAAAAGAAATAGTAAAAGTTTGACAAGTTCAG
* *
317 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTTACATATAAATAAGTATTTAATTCAATGACCAA
66 AAGTTCGTCCAAGAACCAAAAGAGAAACAATTTACATATAAATAAGTATTTAATTCAAAGACCAA
* *
382 AAGTTTTTTTACAAAATGGCAAACTTGTTTGACCGAATGATGA
131 AAGTTTGTTCACAAAATGGCAAACTTGTTTGACCGAATGATGA
*
425 GATCATCTTGAATA-TTTAAGG-ACTCGAAGTGATAATAAAAGAAATAGTAAAAGTTTGACAAGT
1 GATCATCTTGAATACTTTAAGGAAC-CGAACT--T-ATAAAAGAAATAGTAAAAGTTTGACAAGT
* * * *
488 TCAGAAGTTTGTCTAAGAATCAAAAGAGAAA-AATTCT-CATATAAATATA-TTTTTAATTCAAA
62 TCAGAAGTTCGTCCAAGAACCAAAAGAGAAACAATT-TACATATAAATA-AGTATTTAATTCAAA
*
550 GACCAAAAAG-TTGTTCGCAAAATG
125 GACC-AAAAGTTTGTTCACAAAATG
574 AAAAACTATT
Statistics
Matches: 127, Mismatches: 15, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
171 2 0.02
172 12 0.09
173 14 0.11
174 41 0.32
175 58 0.46
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.30
Consensus pattern (173 bp):
GATCATCTTGAATACTTTAAGGAACCGAACTTATAAAAGAAATAGTAAAAGTTTGACAAGTTCAG
AAGTTCGTCCAAGAACCAAAAGAGAAACAATTTACATATAAATAAGTATTTAATTCAAAGACCAA
AAGTTTGTTCACAAAATGGCAAACTTGTTTGACCGAATGATGA
Found at i:790 original size:391 final size:390
Alignment explanation
Indices: 35--797 Score: 1002
Period size: 391 Copynumber: 2.0 Consensus size: 390
25 CGAAGGAATG
* *
35 GATCATCTTGCATACTTTAAGGAACTGAAGTTATAAAAGAAATAGTAAAAGCTTGACAAGTTTAG
1 GATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAAATAGTAAAAGCTTGACAAGTTCAG
100 AAGTTTGTCTAAGAATCAAAAGAGAAATAATTCTCACATAAATATATTATTAATTCAAAGACCAA
66 AAGTTTGTCTAAGAATCAAAAGAGAAATAATTCTCACATAAATATATTATTAATTCAAAGACCAA
* * * * *
165 AAAGTTGTTTGCAAAATGACAAACAATTTAGACCAAGTGATGCAATTTCTCGAGCATGGAATATT
131 AAAGTTGTTCGCAAAATGAAAAACAATTTAGACCAAATGATGCAACTTCCCGAGCATGGAATATT
* * * * *
230 CGCAAAATTGCTCAAAGAAATGGATCATCTTGAATACTTTAAGGAACCGAACTTATAACAGAAAT
196 CGCAAAACTGATCAAAGAAATGGATCATCTTGAATACTGTAAGGAACCAAACTTATAAAAGAAAT
* ** * * *
295 AGTAAAAGTTTTCCTAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTACATATAAAT
261 AGTAAAAGCTTGACTAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTTACACATAAAT
* * * *
360 AAGTATTTAATTCAATGACCAAAAGTTTTTTTACAAAATGGCAAACTTGTTTGACCGAATGATGA
326 AAGTATTTAATTCAATGACAAAAACTTGTTTTACAAAATGACAAACTTGTTTGACCGAATGATGA
*
425 GATCATCTTGAATA-TTTAAGG-ACTCGAAGTGATAATAAAAGAAATAGTAAAAGTTTGACAAGT
1 GATCATCTTGAATACTTTAAGGAACT-GAAGT--T-ATAAAAGAAATAGTAAAAGCTTGACAAGT
* *
488 TCAGAAGTTTGTCTAAGAATCAAAAGAGAAA-AATTCTCATATAAATATATTTTTAATTCAAAGA
62 TCAGAAGTTTGTCTAAGAATCAAAAGAGAAATAATTCTCACATAAATATATTATTAATTCAAAGA
* * *
552 CCAAAAAGTTGTTCGCAAAATGAAAAACTATTTAGA-TAGAATGATGCTACTTCCCGAGCATGGA
127 CCAAAAAGTTGTTCGCAAAATGAAAAACAATTTAGACCA-AATGATGCAACTTCCCGAGCATGGA
* * * * * * *
616 ATGTTCGGAATACTGATCAAAGGAATGGATCGTTTTGAATACTGTAAGGAACCAAAGTTATAAAA
191 ATATTCGCAAAACTGATCAAAGAAATGGATCATCTTGAATACTGTAAGGAACCAAACTTATAAAA
* * * *
681 GAACTCGTAAAAGCTTGACTAGTTCAGAAGTTCATCTAAGAACCAA-AGGTGAAACAATTCT-CA
256 GAAATAGTAAAAGCTTGACTAGTTCAGAAGTTCATCCAAGAACCAAGA-GAGAAACAATT-TACA
* * * *
744 CGTAAATAAGTTTTTAATTTGAA-GAGAAAAACTTGGTTTT-CAAAATGACAAACT
319 CATAAATAAGTATTTAA-TTCAATGACAAAAACTT-GTTTTACAAAATGACAAACT
798 ATTTAGACCA
Statistics
Matches: 321, Mismatches: 43, Indels: 17
0.84 0.11 0.04
Matches are distributed among these distances:
388 3 0.01
389 12 0.04
390 15 0.05
391 224 0.70
392 67 0.21
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (390 bp):
GATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAAATAGTAAAAGCTTGACAAGTTCAG
AAGTTTGTCTAAGAATCAAAAGAGAAATAATTCTCACATAAATATATTATTAATTCAAAGACCAA
AAAGTTGTTCGCAAAATGAAAAACAATTTAGACCAAATGATGCAACTTCCCGAGCATGGAATATT
CGCAAAACTGATCAAAGAAATGGATCATCTTGAATACTGTAAGGAACCAAACTTATAAAAGAAAT
AGTAAAAGCTTGACTAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTTACACATAAAT
AAGTATTTAATTCAATGACAAAAACTTGTTTTACAAAATGACAAACTTGTTTGACCGAATGATGA
Found at i:835 original size:217 final size:215
Alignment explanation
Indices: 459--1361 Score: 779
Period size: 217 Copynumber: 4.2 Consensus size: 215
449 CGAAGTGATA
* * * * * *
459 ATAAAAGAAATAGTAAAAGTTTGACAAGTTCAGAAGTTTGTCTAAGAATCAAAAGAGAAA-AATT
1 ATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAAGGAGAAACAATT
* ** *
523 CTCATATAAATATA-TTTTTAATTCAAAGACCAAAAAGTTGTTCGCAAAATGAAAAACTATTTAG
66 CTCACATAAATA-AGTTTTTAATTCAAAGA-CAAAAAGTTGTTTACAAAATGACAAACTATTTAG
* * * * * * *
587 A-TAGAATGATGCTACTTCCCGAGCATGGAATGTTCGGAATACTGATCAAAGGAATGGATCGTTT
129 ACCA-AAAGATGC-ATTTTCCGAGCATGGAATGTTCGGAAAATTGCTCAAAGGAATGGATCGTTT
* *
651 TGAATACTGTAAGGAACCAAAGTT
192 AGAATACTTTAAGGAACCAAAGTT
* * * * *
675 ATAAAAGAACTCGTAAAAGCTTGACTAGTTCAGAAGTTCATCTAAGAACCAAAGGTGAAACAATT
1 ATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAAGGAGAAACAATT
* ** * * *
740 CTCACGTAAATAAGTTTTTAATTTGAAGAGAAAAACTTGGTTTTCAAAATGACAAACTATTTAGA
66 CTCACATAAATAAGTTTTTAATTCAAAGACAAAAAGTT-GTTTACAAAATGACAAACTATTTAGA
* * ** * ** * *
805 CCAAAAAATGCATTTTCTCGAGCGTGGAATGTTTTGAAAATTTCTCGTAGAAATGGATTGTCTT-
130 CCAAAAGATGCATTTTC-CGAGCATGGAATGTTCGGAAAATTGCTCAAAGGAATGGATCGT-TTA
* *
869 GAATACTTTAAGGAATCGATA-TT
193 GAATACTTTAAGGAA-CCAAAGTT
* * ** * *
892 ATAAAATAACTCGTAAAAGTTT-TCTGGGTTCGGTAGTTCGTCCAAGAACC-AAGAGAGAAACAA
1 ATAAAAGAACTCGTAAAAGTTTGAC-AAGTTCAGAAGTTCGTCCAAGAACCAAAG-GAGAAACAA
*
955 TT-TCCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTA
64 TTCT-CACATAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTA
* * * * * * * *
1019 AACCAAAAGATTCAATTTCCGGAGAATGGAATGTTC-GAAAATTGCTC-GATGAAGTGGTTCATT
128 GACCAAAAGATGCATTTTCC-GAGCATGGAATGTTCGGAAAATTGCTCAAAGGAA-TGGATCGTT
* * *
1082 TAAAATACTTCATGGAA-CAGAAGTT
191 TAGAATACTTTAAGGAACCA-AAGTT
* * * * * *
1107 TTAAAAGAAATTGTAAAAGTTTGACAAGTTCGGAGGTTCGTCCAAGAACCAAGAGG-GAAACAAA
1 ATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAA-AGGAGAAACAAT
* * * * * * *
1171 TCCCACGTCAATAAGTTTTTCATTCAAAGACCAAAAGTTGTATAAAAAATGACAAACTATTTAGA
65 TCTCACATAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * ** * * * **
1236 TCAAATGATGCGATTTTCCGAACATTTAAGGTTCGAAAAATTTG-TAAAAGGAATGGATCGCATA
130 CCAAAAGATGC-ATTTTCCGAGCATGGAATGTTCGGAAAA-TTGCTCAAAGGAATGGATCGTTTA
* *
1300 GAATGCTTTAAGGAACCTAAGTT
193 GAATACTTTAAGGAACCAAAGTT
* * *
1323 ATAAAAGAACTCGTAAAAGTTTGCCAATTTCGGAAGTTC
1 ATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC
1362 AACCAATAAC
Statistics
Matches: 545, Mismatches: 118, Indels: 48
0.77 0.17 0.07
Matches are distributed among these distances:
213 1 0.00
214 6 0.01
215 151 0.28
216 188 0.34
217 193 0.35
218 6 0.01
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.29
Consensus pattern (215 bp):
ATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAAGGAGAAACAATT
CTCACATAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTAGAC
CAAAAGATGCATTTTCCGAGCATGGAATGTTCGGAAAATTGCTCAAAGGAATGGATCGTTTAGAA
TACTTTAAGGAACCAAAGTT
Found at i:2176 original size:216 final size:216
Alignment explanation
Indices: 1782--4957 Score: 3042
Period size: 216 Copynumber: 14.7 Consensus size: 216
1772 AATACTTTAA
* * * * ** * *
1782 AAAATTTCTAGAAGGAATGGATCA-CATAGAATACTTTAAGGAACTTAGGTTATAAAAGAACTCA
1 AAAATTGCTCGAAAGAATGGATCATC-TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
* * ** * * * * *
1846 TAAAAGTTTGACTAGTT-TGAAAGTTCAACCAAGAACTAAGAGAGAAACAATTCGCTCATCATTA
65 TAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
* *
1910 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACTAAA-TATTTAGATCGAATGATGCG
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-AAACTATTTAGACCAAATGATGCG
* *
1974 ATTTCCCGAGCATGTAATGTTAGG
193 ATTTCTCGAGCATGGAATGTTAGG
**
1998 AATAA-TGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCG
1 AA-AATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
* * * * * * * *
2062 TAAAAGCTTGAAAAGTACAGAAGTTCCTCTAAGAACCAGGAGAGAATCAATTCTCACGTAAATAA
65 TAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAA
* ** * *
2127 GTTTTTAATTCAAATACCAAAAGTTGTTTATGAAATGGCAAACTATTTAGA-CAAAGTGATGCAA
130 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGA
* ** ** * *
2191 TTACTCGAGCACAGAATACTCGC
194 TTTCTCGAGCATGGAATGTTAGG
* * * *
2214 AAAATTGCTC-AAAGAAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAACAGAAATAG
1 AAAATTGCTCGAAAG-AATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
** * ** * *
2278 TAAAAGTTTTCCTAGTTTGGAAGTTCGTCCAAGAACCAGGAGAGAAACAATT-TATACATAAATA
65 TAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT-CACATAAATA
* * * * * * * * *
2342 AGTATTTAATTCAATGACCAAAATTTTTTTTACAAAATGGCAAACTATTTTGACCGAATGATACT
129 AGTTTTTAATTCAAAGACCAAAA-GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* *
2407 ATTTCCCGAGCATGGAATGTTCGG
193 ATTTCTCGAGCATGGAATGTTAGG
* * * * * *
2431 AATATTGATCG-AAGTAATAGATCGTCTTGAATACTTTAAGGAACCAAAGTTATGAAAGAACTCG
1 AAAATTGCTCGAAAG-AATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
* * * * *
2495 TAAAAGCTTGACTAGTTCAGAAGTTCGTCTAAGAACCAA-AGGTGAAACAATTCTCACGTAAATA
65 TAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGA-GAGAAACAATTCTCACATAAATA
** ** * * * **
2559 AGTTTTTAATTTGAAGAGAAAAACTTGGTTTTCAAAATAACAAACTATTTAGACCAAAAAATGC-
129 AGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* **
2623 ATTTTCTCGAGCGTGGAATGTTTTG
193 A-TTTCTCGAGCATGGAATGTTAGG
* * ** * *
2648 AAAATTTCTCG-TAGAAATGGATTGTCTTGAATACTTTAAGGAATCGATA-TTATAAAATAACTC
1 AAAATTGCTCGAAAG-AATGGATCATCTTGAATACTTTAAGGAACCGA-AGTTATAAAAGAACTC
* ** * * *
2711 GTAAAAGTTTTATGAGTTCGGTAGTTCGTCCAAGAACCAAGAGAGAAACAATTTTC-CATAAATA
64 GTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
* * * *
2775 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAAAGATTCAA
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * *
2840 TTT-TCGGAGAATGGAATGAT-CG
194 TTTCTC-GAGCATGGAATGTTAGG
* * * * ** * * * *
2862 AAAATTGCTCG-ATGAAGTGGTTCAT-TTATAATACTTCATCGAACAGAAGTTTTAAAAGAAATT
1 AAAATTGCTCGAAAGAA-TGGATCATCTT-GAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * * *
2925 GTAAAAGCTTGACAAGTTCGGAGGTTCGTCCAAGAACCAAGAGAGAAACAAATCCCACATCAATA
64 GTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
* *
2990 AGTTTTTAATTCAAAGACCAAAAGTTGTTTAAAAAATGACAAACTATTTAGATCAAATGATGCGA
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* ** * *
3055 TTT-TCCGAACATTTAAGGTTCA-A
194 TTTCT-CGAGCATGGAATGTT-AGG
* * * * * * *
3078 AAAATTTG-TAGAAGGAATGGATC-GCATAGAATGCTTTAAGGAACCTATGTTATAAAAGAACTC
1 AAAA-TTGCTCGAAAGAATGGATCATC-TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * * * * *
3141 GTAAAAGTTTGCCAATTTCGGAAGTACATCCAAGAACTAAGAGTGAAACAATTCTCACGTAAATA
64 GTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
* * * *
3206 AGTTTTTAATTCAAAGACCAAAAGTTGTTCACAAAACGACAAAATATTTAGACCGAATGATGCGA
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* *
3271 TTTCTCGATCATGGAATGTTTGG
194 TTTCTCGAGCATGGAATGTTAGG
* *
3294 AATATTGCTTGAAAGAATGGATCATCTTGAATACTTTAAGGAACC-AA-TATAATAAAAGAACTC
1 AAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACCGAAGT-T-ATAAAAGAACTC
* * * *
3357 GTAAAAGCTTGAAAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
64 GTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
* * * *
3422 AGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAGATGACAAACTATTTAGACCAAGTGATGCAA
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* *
3487 TTTCTCGAGCACGGAATGTTCA-C
194 TTTCTCGAGCATGGAATGTT-AGG
* * * * *
3510 AAAATTGCTC-AAATAAATAGATCACCTTGAATACTTTAAGGAACCGAAGTTATAACAA-AAATA
1 AAAATTGCTCGAAA-GAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAA-AAGAACTC
** * * *
3573 GTAAAAGTTTTCCTAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATT-TACACATAAAT
64 GTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT-CACATAAAT
* * * * *
3637 AAGTATTTAATTCAATGACCAAAAGTTTTTTAAAAAATGACAAACTATTTTGACCAAATGATGCG
128 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
*
3702 ATTTCTCGAGCATGGAATGTTTGG
193 ATTTCTCGAGCATGGAATGTTAGG
* ** * * * *
3726 AATATTGCTC-ATGGGAATGGATTATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAAATAG
1 AAAATTGCTCGA-AAGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
* * * * * * * *
3790 TAAAAGCTTGACAAGTTCATAAGTTTGTCTAAGAATCAAGGGAGAAATAA-TCTCACATAAATAT
65 TAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAA
* **
3854 GTTTTTAATTCGAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGATAAAATGATGCGAT
130 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * * *
3919 TTTTCAAACATGCAATGTTCA-A
195 TTCTCGAGCATGGAATGTT-AGG
* * * * * * *
3941 AAAATTTCTAGAAGGAATGG--CA-CATAGAATACTTTAAGGAACCTAGGTTATAAAAGAACTCA
1 AAAATTGCTCGAAAGAATGGATCATC-TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
* ** * * * ***
4003 TAAAAGTTTGACTAGTTC-GAAAGTTCAACCTAGAACTAAGAGAGAAACAATTCGCACATCTTTA
65 TAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
*
4067 AGTTTTTAATTCAAAGACCAAAAGTTGTTTAC-AAATGACTAAA-TATTTAGACCGAATGATGCG
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-AAACTATTTAGACCAAATGATGCG
* *
4130 ATTTCCCGAGCATGTAATGTTAGG
193 ATTTCTCGAGCATGGAATGTTAGG
* *
4154 AATAA-TGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAA-CGAAACTTATAAAATAACTC
1 AA-AATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACCG-AAGTTATAAAAGAACTC
* * * * * * *
4217 GTAAAAGCTTGAAAAGTACAGAAGTTCCTCTAAGAACCAAGAGAGAATCAATTCTCACGTAAATA
64 GTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
* *
4282 AGTTTTTAATTCAAATACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA-CAAAGTGATGCA
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCG
** * *
4346 ATTTCTCGAGCATGGAATACTCGC
193 ATTTCTCGAGCATGGAATGTTAGG
* * ** * *
4370 AAAATTGCTC-AAAGAAATGGATCATCATGAATACTTTAAGGAACCGCAGTTATAACGGAAATAG
1 AAAATTGCTCGAAAG-AATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
** * * *
4434 TAAAAGTTTTCCTAGTTC-GAAAGTTCATCCAAGAACCAAGAGATAAACAATT-TACACATAAAT
65 TAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT-CACATAAAT
* * * * * * *
4497 AAGTATTTAATTCAATGACCAAAAGTTTTTTTAAAAAATGGCAAACTATTTTGACCGAATGATGC
128 AAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* *
4562 GATTTCCTC-AGCATGGAATTTTCGG
192 GATTT-CTCGAGCATGGAATGTTAGG
* * * * * *
4587 AATATTGCTCGAAGGATTGGATCATCTTGAATACTTTAAGGAACCGAAGTTATTATAAAAAAATA
1 AAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-TA-AAAGAACTC
* * ** * * *
4652 GTAAAAGCTTGACAAGTTCAGAAGTTTGTTTAAGAATCAAAAGAGAAATAATTCTCACATAAATA
64 GTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
* * * *
4717 TA-TTTTTAATTCAAAGACCAAAAAGTTGTTTTCAAAATGACAAACAATTTTGACCAAGTGATGC
129 -AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * *
4781 AATTTCTCGAGCATGGAATATTTGC
192 GATTTCTCGAGCATGGAATGTTAGG
* * * *
4806 AAAATTGCTC-AAAGAAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAACAGAAATAG
1 AAAATTGCTCGAAAG-AATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
** *
4870 TAAAAGTTTTCCTAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT-TACACATAAATA
65 TAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT-CACATAAATA
* *
4934 AGTATTTAATTCAATGACCAAAAG
129 AGTTTTTAATTCAAAGACCAAAAG
4958 ATTCAATTTC
Statistics
Matches: 2404, Mismatches: 475, Indels: 162
0.79 0.16 0.05
Matches are distributed among these distances:
212 2 0.00
213 128 0.05
214 135 0.06
215 369 0.15
216 1080 0.45
217 493 0.21
218 26 0.01
219 163 0.07
220 8 0.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (216 bp):
AAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
AAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAG
TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
TCTCGAGCATGGAATGTTAGG
Found at i:3442 original size:432 final size:432
Alignment explanation
Indices: 1797--4957 Score: 3523
Period size: 432 Copynumber: 7.3 Consensus size: 432
1787 TTCTAGAAGG
* * * * **
1797 AATGGATCACATAGAATACTTTAAGGAACTTAGGTTATAAAAGAACTCA-TAAAAGTTTGACTAG
1 AATGGATCACATTGAATACTTTAAGGAACCTAAGTTATAAAAGAAAT-AGTAAAAGTTTTCCTAG
* * * * ** * * * *
1861 TTTGAAAGTTCAACCAAGAACTAAGAGAGAAACAATTCGCTCATCATTAAGTTTTTAATTCAAAG
65 TTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTTACACATAAATAAGTATTTAATTCAAAG
* * *
1926 ACCAAAAGTTGTTTACAAAATGACTAAA-TATTTAGATCGAATGATGCGATTTCCCGAGCATGTA
130 ACCAAAAGTTGTTTACAAAATGAC-AAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGA
* * *
1990 ATGTTAGGAATAATGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACAAAAGTTATAAAA
194 ATGTTTGGAATATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAA
* * * * *
2055 GAACTCGTAAAAGCTTGAAAAGTACAGAAGTTCCTCTAAGAACCAGGAGAGAATCAATTCTCACG
259 GAACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACG
* ** *
2120 TAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTTATGAAATGGCAAACTATTTAGA-CAAAGT
324 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA-T
* ** ** *
2184 GATGCAATTACTCGAGCACAGAATACTCGCAAAATTGCTCAAAGA
388 GATGCAATTTCTCGAGCATGGAATGTTCACAAAATTGCTCAAAGA
*
2229 AATGGATCATC-TTGAATACTTTAAGGAA-CTGAAGTTATAACAGAAATAGTAAAAGTTTTCCTA
1 AATGGATCA-CATTGAATACTTTAAGGAACCT-AAGTTATAAAAGAAATAGTAAAAGTTTTCCTA
* * * * *
2292 GTTTGGAAGTTCGTCCAAGAACCAGGAGAGAAACAATTTATACATAAATAAGTATTTAATTCAAT
64 GTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTTACACATAAATAAGTATTTAATTCAAA
* * * * * * *
2357 GACCAAAATTTTTTTTACAAAATGGCAAACTATTTTGACCGAATGATACTATTTCCCGAGCATGG
129 GACCAAAA-GTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGG
* * * * *
2422 AATGTTCGGAATATTGATCG-AAGTAATAGATCGTCTTGAATACTTTAAGGAACCAAAGTTATGA
193 AATGTTTGGAATATTGCTCGAAAG-AATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAA
* *
2486 AAGAACTCGTAAAAGCTTGACTAGTTCAGAAGTTCGTCTAAGAACCAA-AGGTGAAACAATTCTC
257 AAGAACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGA-GAGAAACAATTCTC
** ** * * *
2550 ACGTAAATAAGTTTTTAATTTGAAGAGAAAAACTTGGTTTTCAAAATAACAAACTATTTAGACCA
321 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCA
** * * *** * **
2615 AAAAATGCATTTTCTCGAGCGTGGAATGTTTTGAAAATTTCTCGTAGA
385 AATGATGCAATTTCTCGAGCATGGAATGTTCACAAAATTGCTCAAAGA
** * * * * * *
2663 AATGGATTGTC-TTGAATACTTTAAGGAATCGATA-TTATAAAATAACTCGTAAAAGTTTT-ATG
1 AATGGA-TCACATTGAATACTTTAAGGAACCTA-AGTTATAAAAGAAATAGTAAAAGTTTTCCT-
* * * *
2725 AGTTCGGTAGTTCGTCCAAGAACCAAGAGAGAAACAATTTTC-CATAAATAAGTTTTTAATTCAA
63 AGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTTACACATAAATAAGTATTTAATTCAA
* * * * * *
2789 AGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAAAGATTCAATTT-TCGGAGAATG
128 AGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTC-GAGCATG
* * * * * * * ** *
2853 GAATG-ATCGAAAATTGCTCG-ATGAAGTGGTTCAT-TTATAATACTTCATCGAA-CAGAAGTTT
192 GAATGTTTGGAATATTGCTCGAAAGAA-TGGATCATCTT-GAATACTTTAAGGAACCA-AAGTTA
* * * * * *
2914 TAAAAGAAATTGTAAAAGCTTGACAAGTTCGGAGGTTCGTCCAAGAACCAAGAGAGAAACAAATC
254 TAAAAGAACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTC
* * * * *
2979 CCACATCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAAAAAATGACAAACTATTTAGATC
319 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
* * ** * * *
3044 AAATGATGCGATTT-TCCGAACATTTAAGGTTCAAAAAATTTG-T-AGAAGG
384 AAATGATGCAATTTCT-CGAGCATGGAATGTTCACAAAA-TTGCTCA-AAGA
* * * * * * * * *
3093 AATGGATCGCATAGAATGCTTTAAGGAACCTATGTTATAAAAGAACTCGTAAAAGTTTGCCAATT
1 AATGGATCACATTGAATACTTTAAGGAACCTAAGTTATAAAAGAAATAGTAAAAGTTTTCCTAGT
* * * * *
3158 TCGGAAGTACATCCAAGAACTAAGAGTGAAACAATTCT-CACGTAAATAAGTTTTTAATTCAAAG
66 TCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATT-TACACATAAATAAGTATTTAATTCAAAG
* * * *
3222 ACCAAAAGTTGTTCACAAAACGACAAAATATTTAGACCGAATGATGCGATTTCTCGATCATGGAA
130 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAA
* *
3287 TGTTTGGAATATTGCTTGAAAGAATGGATCATCTTGAATACTTTAAGGAACCAATA-TAATAAAA
195 TGTTTGGAATATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACCAA-AGTTATAAAA
*
3351 GAACTCGTAAAAGCTTGAAAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACG
259 GAACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACG
* * *
3416 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAGATGACAAACTATTTAGACCAAGTG
324 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* *
3481 ATGCAATTTCTCGAGCACGGAATGTTCACAAAATTGCTCAAATA
389 ATGCAATTTCTCGAGCATGGAATGTTCACAAAATTGCTCAAAGA
* * *
3525 AATAGATCACCTTGAATACTTTAAGGAACCGAAGTTATAACAA-AAATAGTAAAAGTTTTCCTAG
1 AATGGATCACATTGAATACTTTAAGGAACCTAAGTTATAA-AAGAAATAGTAAAAGTTTTCCTAG
* * *
3589 TTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTTACACATAAATAAGTATTTAATTCAATG
65 TTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTTACACATAAATAAGTATTTAATTCAAAG
* * * *
3654 ACCAAAAGTTTTTTAAAAAATGACAAACTATTTTGACCAAATGATGCGATTTCTCGAGCATGGAA
130 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAA
** * **
3719 TGTTTGGAATATTGCTC-ATGGGAATGGATTATCTTGAATACTTTAAGGAACTGAAGTTATAAAA
195 TGTTTGGAATATTGCTCGA-AAGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAA
* * * * * * * *
3783 GAAATAGTAAAAGCTTGACAAGTTCATAAGTTTGTCTAAGAATCAAGGGAGAAATAA-TCTCACA
259 GAACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACG
* * **
3847 TAAATATGTTTTTAATTCGAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGATAAAATG
324 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * * * * * *
3912 ATGCGATTTTTCAAACATGCAATGTTCAAAAAATTTCT-AGAAGG
389 ATGCAATTTCTCGAGCATGGAATGTTCACAAAATTGCTCA-AAGA
* * * **
3956 AATGG--CACATAGAATACTTTAAGGAACCTAGGTTATAAAAGAACTCA-TAAAAGTTTGACTAG
1 AATGGATCACATTGAATACTTTAAGGAACCTAAGTTATAAAAGAAAT-AGTAAAAGTTTTCCTAG
* * * * ** *** *
4018 TTCGAAAGTTCAACCTAGAACTAAGAGAGAAACAATTCGCACATCTTTAAGTTTTTAATTCAAAG
65 TTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTTACACATAAATAAGTATTTAATTCAAAG
* *
4083 ACCAAAAGTTGTTTAC-AAATGACTAAA-TATTTAGACCGAATGATGCGATTTCCCGAGCATGTA
130 ACCAAAAGTTGTTTACAAAATGAC-AAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGA
* * * *
4146 ATGTTAGGAATAATGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACGAAACTTATAAAA
194 ATGTTTGGAATATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAA
* * * * *
4211 TAACTCGTAAAAGCTTGAAAAGTACAGAAGTTCCTCTAAGAACCAAGAGAGAATCAATTCTCACG
259 GAACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACG
*
4276 TAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA-CAAAGT
324 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA-T
** *
4340 GATGCAATTTCTCGAGCATGGAATACTCGCAAAATTGCTCAAAGA
388 GATGCAATTTCTCGAGCATGGAATGTTCACAAAATTGCTCAAAGA
** **
4385 AATGGATCATCA-TGAATACTTTAAGGAACCGCAGTTATAACGGAAATAGTAAAAGTTTTCCTAG
1 AATGGATCA-CATTGAATACTTTAAGGAACCTAAGTTATAAAAGAAATAGTAAAAGTTTTCCTAG
* * *
4449 TTCGAAAGTTCATCCAAGAACCAAGAGATAAACAATTTACACATAAATAAGTATTTAATTCAATG
65 TTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTTACACATAAATAAGTATTTAATTCAAAG
* * * *
4514 ACCAAAAGTTTTTTTAAAAAATGGCAAACTATTTTGACCGAATGATGCGATTTCCTC-AGCATGG
130 ACCAAAAG-TTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTT-CTCGAGCATGG
* * *
4578 AAT-TTTCGGAATATTGCTCGAAGGATTGGATCATCTTGAATACTTTAAGGAACCGAAGTTATTA
193 AATGTTT-GGAATATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTA-TA
* * * * * * * *
4642 TAAAAAAATAGTAAAAGCTTGACAAGTTCAGAAGTTTGTTTAAGAATCAAAAGAGAAATAATTCT
256 -AAAGAACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT
* * * *
4707 CACATAAATATA-TTTTTAATTCAAAGACCAAAAAGTTGTTTTCAAAATGACAAACAATTTTGAC
320 CACGTAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGAC
* * **
4771 CAAGTGATGCAATTTCTCGAGCATGGAATATTTGCAAAATTGCTCAAAGA
383 CAAATGATGCAATTTCTCGAGCATGGAATGTTCACAAAATTGCTCAAAGA
* * *
4821 AATGGATCATC-TTGAATACTTTAAGGAATCGAAGTTATAACAGAAATAGTAAAAGTTTTCCTAG
1 AATGGATCA-CATTGAATACTTTAAGGAACCTAAGTTATAAAAGAAATAGTAAAAGTTTTCCTAG
* * *
4885 TTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTACACATAAATAAGTATTTAATTCAATG
65 TTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTTACACATAAATAAGTATTTAATTCAAAG
4950 ACCAAAAG
130 ACCAAAAG
4958 ATTCAATTTC
Statistics
Matches: 2279, Mismatches: 388, Indels: 120
0.82 0.14 0.04
Matches are distributed among these distances:
428 144 0.06
429 219 0.10
430 141 0.06
431 410 0.18
432 624 0.27
433 311 0.14
434 139 0.06
435 84 0.04
436 204 0.09
437 3 0.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (432 bp):
AATGGATCACATTGAATACTTTAAGGAACCTAAGTTATAAAAGAAATAGTAAAAGTTTTCCTAGT
TCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTTACACATAAATAAGTATTTAATTCAAAGA
CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAAT
GTTTGGAATATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
ACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTA
AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
GCAATTTCTCGAGCATGGAATGTTCACAAAATTGCTCAAAGA
Found at i:5078 original size:180 final size:181
Alignment explanation
Indices: 4780--5137 Score: 474
Period size: 180 Copynumber: 2.0 Consensus size: 181
4770 CCAAGTGATG
* *
4780 CAATTTCTCGAGCATGGAATATTTGCAAAATTGCTCAAAGAAATGGATCATCTTGAATACTTTAA
1 CAATTTCTCGAGAATGGAATATTCGCAAAATTGCTCAAAGAAATGGATCATCTTGAATACTTTAA
* ** *
4845 GGAATCGAAGTTATAACAGAAATAGTAAAAGTTTTCCTAGTTCAGAAGTTCGTCCAAGAACCAAG
66 GGAATCGAAGTTATAAAAGAAATAGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAG
* * *
4910 AGAGAAACAATTTACACATAAATAAGTATTTAATTCAATGACCAAAAGATT
131 AGAGAAACAATTCACACATAAAGAAGTATTTAATTCAAAGACCAAAAGATT
* * * * *
4961 CAATTTC-CGGAGAATGGAATGTTCG-AAAATTGCTCGATGAAGTGGATCAT-TTATAATACTTT
1 CAATTTCTC-GAGAATGGAATATTCGCAAAATTGCTCAAAGAAATGGATCATCTT-GAATACTTT
*
5023 AAGGAATCGAAGTTGTAAAAGAACAT-GTAAAAGTTTGACAAGTTC-GAAGGTTCGTCCAAGAAC
64 AAGGAATCGAAGTTATAAAAGAA-ATAGTAAAAGTTTGACAAGTTCAGAA-GTTCGTCCAAGAAC
* * * *
5086 CAAGAGAGAAACAATTCCCACGTCAAGAAGTTTTTAATTCAAAGACCAAAAG
127 CAAGAGAGAAACAATTCACACATAAAGAAGTATTTAATTCAAAGACCAAAAG
5138 TTCTTTACAA
Statistics
Matches: 154, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
179 5 0.03
180 127 0.82
181 22 0.14
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.27
Consensus pattern (181 bp):
CAATTTCTCGAGAATGGAATATTCGCAAAATTGCTCAAAGAAATGGATCATCTTGAATACTTTAA
GGAATCGAAGTTATAAAAGAAATAGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAG
AGAGAAACAATTCACACATAAAGAAGTATTTAATTCAAAGACCAAAAGATT
Found at i:5414 original size:216 final size:215
Alignment explanation
Indices: 4949--12447 Score: 4895
Period size: 216 Copynumber: 34.9 Consensus size: 215
4939 TTAATTCAAT
* * * * * **
4949 GACCAAAAGATTCAATTTC-CGGAGAATGGAATGTTC-GAAAATTGCTCG-ATGAAGTGGATCAT
1 GACCAAATGATGCAATTTCTC-GAGCATGGAATGTTCGGAAAATTGCTAGAAGGAA-TGGATCGC
* * * *
5011 TTATAATACTTTAAGGAATCGAAGTTGTAAAAGAACATGTAAAAGTTTGACAAGTTC-GAAGGTT
64 TT-GAATACTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAAGTTTGACAAGTTCGGAA-GTT
* * *
5075 CGTCCAAGAACCAAGAGAGAAACAATTCCCACGTCAAGAAGTTTTTAATTCAAAGACCAAAAGTT
127 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
*
5140 CTTTACAAAATGACAAACTATTTA
192 GTTTACAAAATGACAAACTATTTA
* * * ** * * * ** * * *
5164 TATCAAACGATGTGATTTTTAGAACATTAAATGTTCGAAAAATTTG-TAGGAGGAATTGATCGCA
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAA-TTGCTAGAAGGAATGGATCGC-
* * * * *
5228 TAGAATACTTTAAGGAACCTAAGTTATAAAAGAACACGTAAAAGTTTGACAAGTTTGGAAGTTCA
64 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAAGTTTGACAAGTTCGGAAGTTCG
* * *
5293 TCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTCTAATTGAAAGACCAAAAGTTGT
129 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* *
5358 TTACAAAATGACTAACTGTTTA
194 TTACAAAATGACAAACTATTTA
* * * * *
5380 GACCAAGTGATGCAATTTGTCGAGCATGAAATGTTTGGAAAATTGC-ACGAA-AAAGTGGATCGT
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTA-GAAGGAA-TGGATCG-
* * * ** * * *
5443 CTTGAATACTTTAAGCAGCCGAAGTTATAATAGAA-ATAGTAAAAGTTTTCCTAGTTTGAAAGTT
63 CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACA-AGTAAAAGTTTGACAAGTTCGGAAGTT
* * * *
5507 CGT-CATAGAACCAAGAGAGAAACAATT-TACACATAAATAAGTATTTAACTCAATGACCAAAAG
127 CGTCCA-AGAACCAAGAGAGAAACAATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * *
5570 TTTTTTTTACAAAATGATAAACTATTTT
190 --TTGTTTACAAAATGACAAACTATTTA
* * * * * * * **
5598 GACCGAATGATGCGATTTCTCGAGCATGAAATTTTCGGAATATTGCTCGAAGGATTGGATCATAT
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGAATGGATC-GCT
* * * * *
5663 TGAATACATTAAGGAACCAAATTTATAATAAAAGAA-ATAGTAAAAGCTTGACAAGTTCAGAAGT
65 TGAATACTTTAAGGAACCGAA-GT-T-ATAAAAGAACA-AGTAAAAGTTTGACAAGTTCGGAAGT
* * * * * * ** *
5727 TTGTCTAAGAATCAAAAGAGAAATAATTCTCACATAAATATTTTTTTAATTGAAAGACCAAAAAG
126 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAAG
* *
5792 TTGTTTTCAAAATGACAAACAATTTA
190 TTGTTTACAAAATGACAAACTATTTA
* * * * *
5818 GACCAAGTGATGCAATTTCTCGAGCAT-GAATATTCGCAAAATTGCTCA-AAGAAATGGATCATC
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCT-AGAAGGAATGGATC-GC
* * * ** * *
5881 ATGAATACTTTAAGGAACCGAAATTATAACAGAA-ATAGTAAAAGTTTTCCTAGTTCGAAAGTTC
64 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACA-AGTAAAAGTTTGACAAGTTCGGAAGTTC
* * * * **** * *
5945 ATCCAAGAACCAAGAGAGAAAC---TC-CAAGAACCAAGAGAG-AAACAATTTTCACATA--AAT
128 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTA--AATA-AGTTTTTAA--TTCAAAGACCAA-
* * * * *
6003 AAG-TATTTA-ATTCAATGACTAAAAGTTTTTT
187 AAGTTGTTTACA--AAATGAC--AAACTATTTA
* * * * * ** ** *
6034 TACAAAATG--GCAAACTATT-TTGACCGAATGATGAGAT-TTCTCGAGCA-TGGAATGATCGGA
1 GACCAAATGATGC-AA-T-TTCTCGA--GCATG--GA-ATGTTC-GGAAAATTGCTA-GA-AGGA
* * ** * * * * * *
6094 AT--ATTGCTTGAAGGA-TTGT-ATCATCTTGAA-TACTTTAAGGACTCGAAGTGATAATAAAAG
55 ATGGATCGCTTGAA-TACTT-TAAGGAAC-CGAAGT--TATAA--A--AGAA--CA-AGTAAAAG
* * * * * * * * **
6154 AAATAGTAAAAGTTTGACAAGTTCAGAAGTTTGTCTAAGAATCAAAAGAGAAATAATTCTCATAT
108 --TTTG-ACAAGTT---C--G----GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
** *
6219 AAATATA-TTTTTAATTCAAAGACCAAAAAGTTGTTCGCAAAATGAAAAACTATTTA
161 AAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTA
* * * * * * * *
6275 GATCGAATGATGCTACTTC-CAGAGCATGGAATGTTCGGAATACTGATCGAAGGAATGGATCGTC
1 GACCAAATGATGCAATTTCTC-GAGCATGGAATGTTCGGAAAATTGCTAGAAGGAATGGATCG-C
* * ** * * * *
6339 TTGAATACTGTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGCTTGACTAGTTCAGAAGTTCA
64 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAAGTTTGACAAGTTCGGAAGTTCG
* * ** ** *
6404 TCTAAGAACCAA-AGGTGAAACAATTCTCACGTAAATAAGTTTTTAATTTGAAGAGAAAAACTTG
129 TCCAAGAACCAAGA-GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT-
*
6468 GTTTTCAAAATGACAAACTATTTA
192 GTTTACAAAATGACAAACTATTTA
** * * * * * *
6492 GACCAAAAAATGCAATTTCCCGAGCATGGAATGTTTGGAAAATTGCTCGTAGAAATGGATGGTCT
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGAATGGATCG-CT
* * * * *
6557 TGAATTCTTTAAGGAACCGAAGTTATAAAATAACTCA-TAAAAGTATT-ACTAGTTCGGTAGTTC
65 TGAATACTTTAAGGAACCGAAGTTATAAAAGAAC-AAGTAAAAGT-TTGACAAGTTCGGAAGTTC
* * * *
6620 GTCCAAGAACCAAGAGAGAAACAATTTTCACATAAATAAGTTTTTAATTCAACGACCAAAAGTTT
128 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
*
6685 TTTACAAAATGATAAACTATTTA
193 TTTACAAAATGACAAACTATTTA
* * * ** * * * **
6708 AACCAAAAGATTCAATTT-TCGGATAATGGAATGTT-AGAAAATTGCTTG-ATGAAGTGGATCAT
1 GACCAAATGATGCAATTTCTC-GAGCATGGAATGTTCGGAAAATTGCTAGAAGGAA-TGGATCGC
* * * * * ** * ** * * *
6770 TTATAATACTTCAAGCAGCCGGAGTTATATTAGAA-ATATTAAAAGTTTTCCTAGTTTGAAAGTT
64 TT-GAATACTTTAAGGAACCGAAGTTATAAAAGAACA-AGTAAAAGTTTGACAAGTTCGGAAGTT
* * * * *
6834 CAT-CATAGAACCAAGAGAGAAACAATT-TACACATAAATAAGTATTTAACTCAACGACCAAAAG
127 CGTCCA-AGAACCAAGAGAGAAACAATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * *
6897 TTTTTTTTACAAAATGATAAACTATTTT
190 --TTGTTTACAAAATGACAAACTATTTA
* * * * *
6925 GACCGAATGATGCGATTTCTCGAGCATGGAATTTTC-GAAATATTGCTCA-AAGGATTGGATCAT
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAA-ATTGCT-AGAAGGAATGGATC-G
* * * *
6988 CTTGATTACTTTAAGGAACCGAAGTTATTATAAAAGAA-ATAGTAAAAGCTTGACAAGTTCAGAT
63 CTTGAATACTTTAAGGAACCGAAG---TTATAAAAGAACA-AGTAAAAGTTTGACAAGTTCGGAA
* * * * * * * * *
7052 GTTTGTCTAAGAATCAAAAGAGAAATAATTCTCACATAAGTATA-TTTTTACTTCAAAGGTA-AA
124 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA-AGTTTTTAATTCAAA-G-ACCA
*
7115 AAAGTTGTTTTGCAAAATGACAAACTATTTA
186 AAAGTTG-TTTACAAAATGACAAACTATTTA
* * * * * *
7146 GACCGAATGATGCTATTTCCCGAGCATGGAATGTTCGGAATATTGATCGAAGGAATGGATCGTCT
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGAATGGATCG-CT
* * * * * * * * *
7211 TAAATACTTTAAGGAACCAAAGTTACAAAAGATCTCA-TAAAAGGTTGACTAGTTCAGAAGTTTG
65 TGAATACTTTAAGGAACCGAAGTTATAAAAGAAC-AAGTAAAAGTTTGACAAGTTCGGAAGTTCG
* ** *
7275 TCTAAGAACCGAAG-GAGAAAC--TTGCT--CGTAGAAT--GTTTTTAATTTGAAGACCAAAACT
129 TCCAAGAACC-AAGAGAGAAACAATT-CTCACGTA-AATAAGTTTTTAATTCAAAGACCAAAAGT
* *
7333 TGGTTTTCAAAATGACAAACTATCTA
191 T-GTTTACAAAATGACAAACTATTTA
* * * * * * *
7359 GACCAAAAGATGCAATTTCCCGAGCATGGAATGTTTGGAAAATTGCTCGTAGAAATGGATGGTCT
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGAATGGATCG-CT
* * * * *
7424 TGAATTA-TTTAAGGAACCGAAGTTATAAAATAACTCA-TAAAAGTATT-ACTAGTTTGGTAGTT
65 TGAA-TACTTTAAGGAACCGAAGTTATAAAAGAAC-AAGTAAAAGT-TTGACAAGTTCGGAAGTT
* * *
7486 CATCCAAGAACCAAGAGAGAAACAATTTTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTT
127 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
*
7551 GTTTACAAAATGATAAACTATTTA
192 GTTTACAAAATGACAAACTATTTA
* * * * * * *
7575 AACCAAAAGATTCAATTTC-CG-GATAGTGGAATGTTC-GAAAATTGCTTG-ATGAAGTGGATCA
1 GACCAAATGATGCAATTTCTCGAG-CA-TGGAATGTTCGGAAAATTGCTAGAAGGAA-TGGATCG
* * * * * *** *
7636 TTTATAATACTTCAAGGAACCAAAGTTTTAAAAGAAGTTGTAAAAGTTTGACAAGTTTGGAAGTT
63 CTT-GAATACTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAAGTTTGACAAGTTCGGAAGTT
* * * * * *
7701 CATCCAAGAACTAAGAGAGAAACAATTGTAATGTAAATAAGTTTTTAATTCAAAGACCAAAATTT
127 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
* *
7766 ATTTACAAAATGACAAAATATTTA
192 GTTTACAAAATGACAAACTATTTA
* * * * **
7790 GACCGAATGATGCAATTTCTCGAGCATGGAATGTTTGGAATATTGCTCGAAACAATGGATCGTCT
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGAATGGATCG-CT
** * * *
7855 TGAATACTTTAAGGAACC-AATGTTATAAAAGAACTTGTAAAAGCTTGAAAAGTT-GAAAAGTTC
65 TGAATACTTTAAGGAACCGAA-GTTATAAAAGAACAAGTAAAAGTTTGACAAGTTCG-GAAGTTC
* * ** *
7918 GTCTAAGAACCAAGAAAGAAACAATTCTCACGTAAATAAGTTTTTAATTGTAAGACTAAAAGTTG
128 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
*
7983 TTTACAAAATGACTAACTATTTA
193 TTTACAAAATGACAAACTATTTA
* * * * * *
8006 GACCAAGTGATGCAATTTCTCGAGCATGGAATGTTTGGAAAACTGCTCGAA-AAAGTGGATTGTC
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGAA-TGGATCG-C
* ** * *
8070 TTGAATACTTTAAGGAGCCGAAGTTA-AAATAGAA-ATAGTAAAAGTTTTCCTAGTTCGAAAGTT
64 TTGAATACTTTAAGGAACCGAAGTTATAAA-AGAACA-AGTAAAAGTTTGACAAGTTCGGAAGTT
* * * * *
8133 CGTCCAAGAACCAAGAGAGAAGCAATT-TACACATAAATATGTATTTAATTCAATGACCAAAAGT
127 CGTCCAAGAACCAAGAGAGAAACAATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
8197 TGTTTACAAAATGACAAACTATTTA
191 TGTTTACAAAATGACAAACTATTTA
* * * * * * * **
8222 AACCAAAAGATTCAATTT-TCGGAGAATGGAATGTTC-AAAAATTGCTCG-ATGAAGTGGATCAT
1 GACCAAATGATGCAATTTCTC-GAGCATGGAATGTTCGGAAAATTGCTAGAAGGAA-TGGATCGC
* * * ** *
8284 TTATAATACTTCAAGGAACCGAAGTTTTAAAAGAACTTGTAAAAGTTTGACAAGTTCGGAGGTTC
64 TT-GAATACTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAAGTTTGACAAGTTCGGAAGTTC
* *
8349 GTCCAAGAACCAAGAGAGAAACAATTCCCACGTCAATAAGTTTTTAATTCAAAGACCAAAAGTTG
128 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
8414 TTTACAAAATGACAAACTATTTA
193 TTTACAAAATGACAAACTATTTA
* * * * * * * *
8437 GATCAAATGATGCGATTTTTCGACCATTGAATGTTCGCAAAATTTG-TAGAATGAATGGATCACA
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAA-TTGCTAGAAGGAATGGATCGC-
* * ** * ** * * *
8501 TAGAATGCTTTAAGGAACTTATGTTATAAAAGAACTCGTAAAAGCTTGACAAGTTCGAAAGTTCA
64 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAAGTTTGACAAGTTCGGAAGTTCG
* * *
8566 TCCAAGAACTAAGAGAGATACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAAGTTGT
129 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
*
8631 TTACAAAATGACTAACTATTTA
194 TTACAAAATGACAAACTATTTA
* * * * *
8653 GACCAAGTGATGCAATTTCTGGAGCATGGAATGTTTGGAAAATTGCTCGAA-AAAGTGGATCGTC
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGAA-TGGATCG-C
*** ** * * *
8717 TTGAATACTTTAAGGTGTCGAAGTTA-AAATAGAA-ATAGTAAAAGTTTTTCTAGTTTGAAAGTT
64 TTGAATACTTTAAGGAACCGAAGTTATAAA-AGAACA-AGTAAAAGTTTGACAAGTTCGGAAGTT
* * * *
8780 CGTCACAA-AACCAAGAGAGAAACAATT-TCCACATAAATAAGTATTTAACTCAATGACCAAAAG
127 CGTC-CAAGAACCAAGAGAGAAACAATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAA-
* * *
8843 GTTTTTTTACAAAATGATAAACTATTTT
189 G-TTGTTTACAAAATGACAAACTATTTA
** * * * * * * * * *
8871 GACTGAATGATGCGATTTCCCAATCACGGAATTTTC-GAAATATTGCTCGAAGGATTGGATCCTC
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAA-ATTGCTAGAAGGAATGGAT-CGC
* * *
8935 TTGAATACTTTAAGGAACCGAAGTTAT--TATAA-AAG-AAATAGTTTGGA-AA------AAATT
64 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAA-AGTTT-GACAAGTTCGGAAGTT
* * * **** * * * * *
8989 C-T-CACGTA--AATA-AGTTTTTAATT-TGAAGATCAA-AACTTGGTT--TTCAAAATGA-C-A
127 CGTCCAAGAACCAAGAGAG-AAACAATTCTCACG-TAAATAAGTT-TTTAATTC-AAA-GACCAA
* * ** *
9043 AACTATCTAGACCAAAA-GATGC-AA-T-TTCTC
187 AAGT-TGTTTA-CAAAATGA--CAAACTATT-TA
* * * * * * * ***
9073 GAGCATGGAATGTTTGGAAAATTGCTCGTAGAAATGG-ATGGTCTTG--AATT-CTTTCAGG-A-
1 GACCA---AATG-AT-G-CAATTTCTCG-AG-CATGGAATGTTC-GGAAAATTGCTAGAAGGAAT
* * * * *** ** **
9132 --A-C-C--GAAGT--TATAA--AA--TAACTCATAAAAG---TTTTACTAGTTTG-GTAGTTCG
57 GGATCGCTTGAA-TACTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAAGTTTGACAAGTTCG
* * * * * *
9181 TCCAAG--A-----AG---CAAGAGAGAAGCAATTTTAACATAAATAAGTTTTTAATTCAAAGAC
121 --GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * *
9236 CAAAAATTGTTTATAGAATGATAAACTATTTA
184 CAAAAGTTGTTTACAAAATGACAAACTATTTA
* * * ** * * **
9268 AACCAAAAGATTCAATTTC-CAGATAATGGAATGTTC-GAAAATTGCTCG-ATGAAGTGGATCAT
1 GACCAAATGATGCAATTTCTC-GAGCATGGAATGTTCGGAAAATTGCTAGAAGGAA-TGGATCGC
* * * ** *
9330 TTATAATACTCTAAGGAACCGAAGTTGTAAAAGAACTTGTAAAAGTTTGACAAGTTTGGAAGTTC
64 TT-GAATACTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAAGTTTGACAAGTTCGGAAGTTC
* * * *
9395 ATCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCAATTCAAAGACCAAAATTTG
128 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* *
9460 TTTACAAAATGAAAAAATATTTA
193 TTTACAAAATGACAAACTATTTA
* * * * * **
9483 GACCGAATGTTGCAATTTCTCGAGCATGGAATGTTTGGAATATTGCTCGAAACAATGGATCGTCT
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGAATGGATCG-CT
** * * *
9548 TGAATACTTTAAGGAACC-AATGTTATAAAAGAACTCGTAAAAGCTTGAAAAGTTCAGAAGTTCG
65 TGAATACTTTAAGGAACCGAA-GTTATAAAAGAACAAGTAAAAGTTTGACAAGTTCGGAAGTTCG
* * * * *
9612 TCTAAGAACCAAGAGAGAAATAATTCTCAGGTAAATAAGTTTTTAATTGAAAGACCAAAATTTGT
129 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
*
9677 TTACAAAATGACTAACTATTTA
194 TTACAAAATGACAAACTATTTA
* * * *
9699 GACCAAGTGATGCAATTTCTCGAGCATGGAATGTTTGGAAAATTGCTCGAA-AAATTGGATCGTC
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGAA-TGGATCG-C
* * ** * *
9763 TTGAATACTTTAAGGAGCCGAAGTTATAATAGAA-ATAGTAAAAGTTTTCCTAGTTCGAAAGTTC
64 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACA-AGTAAAAGTTTGACAAGTTCGGAAGTTC
* * * * * *
9827 ATCCAAGAACC-A-AGAGAAGCAATT-TACACATAATTAAGTATTTAATTCAATGACCAAAAGTT
128 GTCCAAGAACCAAGAGAGAAACAATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
*
9889 GTTTACAAAATGACAAACTATTTT
192 GTTTACAAAATGACAAACTATTTA
** * * *
9913 GA-CAGAATGATGTGATTTCTCGAGCATGGAATGTTCGGAATATTGCTCGAAGGAATGGATCATC
1 GACCA-AATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGAATGGATC-GC
* * * * * *
9977 TTGAATACTTTAAGGAACTGAAGTTATAAAA-AAAATAGTAAAGGCTTGACAAGTTCAGAAGTTT
64 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACA-AGTAAAAGTTTGACAAGTTCGGAAGTTC
* * * * * * *
10041 GTCTAAGAATCAAGGGAGAAATAA-TCTCACATAAATATGATTTTAATTCAAAGACCAAAAGTTG
128 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
10105 TTTACAAAATGACAAACTATTTA
193 TTTACAAAATGACAAACTATTTA
** ** * * * * * * *
10128 GATAAAATGATGTGATTTTTCGAACATGCAATGTTCGAAAAATTTCTAGAAGGAGTGGATCACAT
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGAATGGATCGC-T
* * * * * * *
10193 AGAATACTTTAAGGAACCTAAGTTATAAAAGAAC-TGATAAACGTTTGACTAGTTCGAAAGTTCA
65 TGAATACTTTAAGGAACCGAAGTTATAAAAGAACAAG-TAAAAGTTTGACAAGTTCGGAAGTTCG
* * * * *
10257 TCCAAGAACTAAGAGAGAAACAATTCCCACGTCATTAAGTTTTTAATTCAAAGGCCAAAAGTTGT
129 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
*
10322 TTACAAAATGACAAAATATTTA
194 TTACAAAATGACAAACTATTTA
* * * * * *
10344 GACCGAATGATGCAATTTCCCGAGCATGGAATGTTAGGAATAA-TGCTCGAAAGAATGGATCATC
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAA-AATTGCTAGAAGGAATGGATC-GC
* ** ** * * ** *
10408 TTGAATACTTTAA-TAAATGAAAGTTATAAAAGAACTCGTAAAAGCTTGAAAAGTTTAGAAGTTT
64 TTGAATACTTTAAGGAACCG-AAGTTATAAAAGAACAAGTAAAAGTTTGACAAGTTCGGAAGTTC
* ** *
10472 GTCTAAGAATTAAGAGAGAAACAA-T-TCACGTAAATAAGTTTTTAATTGAAAGACCAAAAGTTG
128 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
*
10535 TTTACAAAATGACTAACTATTTA
193 TTTACAAAATGACAAACTATTTA
* * * * * * *
10558 GACCAAGTGACGTAATTTCTCGAGCATGGAATGTTTGGGAAATTGCTCGAAGAAATGGATCGTCT
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGAATGGATCG-CT
* * ** * * * *
10623 TGAATACTTTAAGGAGCAGAAGTTAT---AGAA-ATAGTAAAAGTTTTCCTAGTTTGAAAGTTCT
65 TGAATACTTTAAGGAACCGAAGTTATAAAAGAACA-AGTAAAAGTTTGACAAGTTCGGAAGTTCG
* * *
10684 TCACAA-AACCAAGAGAGAAACAATT-T-ACAGATAAATAGGTATTTAATTAAAAGACCAAAAGT
129 TC-CAAGAACCAAGAGAGAAACAATTCTCAC-G-TAAATAAGTTTTTAATTCAAAGACCAAAAGT
*
10746 TGTTTACAAAATGACAAACTATTTT
191 TGTTTACAAAATGACAAACTATTTA
* * * * * * * *
10771 GACCGAATGATGCGATTTCCCAAGTATGGAATGTTC-GAAATATTGCTCGAAGGAATTGATCATC
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAA-ATTGCTAGAAGGAATGGATC-GC
* * ** * *
10835 TTGAGTACTTTAAGGAACCGAAGTTATAAAAGAA-ATAGCAAAAACTTGACAAGTTCAGAAGTTT
64 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACA-AGTAAAAGTTTGACAAGTTCGGAAGTTC
* * * * *
10899 TTCTAAGAATCAAGAGAGAAATAA-TCTCACGTAAAT-ATTATTTTAATTCAAAGACCAAAAGTT
128 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT-TTTTAATTCAAAGACCAAAAGTT
*
10962 ATTTACAAAATGACAAACTATTTA
192 GTTTACAAAATGACAAACTATTTA
** *** *
10986 GACTGAATGATATGATTTC-CGAGCATGGAATGTTC-GAAATATTGCTCGAAGGAATGGATCGTC
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAA-ATTGCTAGAAGGAATGGATCG-C
** ** * *
11049 TTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGCTTGACTAA-TTCAGAAGTTC
64 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAAGTTTGAC-AAGTTCGGAAGTTC
* * * *
11113 GTCTAAGAACCAA-AGGAGAAACAATTCTCAC-TAAAATAAG--TTT--TT--AGGACAAAAACT
128 GTCCAAGAACCAAGA-GAGAAACAATTCTCACGT-AAATAAGTTTTTAATTCAAAGACCAAAAGT
* * *
11170 TTTTTTCAAAATGGCAAACTATTTA
191 TGTTTACAAAATGACAAACTATTTA
* * * * * * *
11195 GACCAAATGATGCAACTTATCGAGCATGGAGTGTTTGGAAAATTTCTCA-AAGAAATGGATGGTC
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCT-AGAAGGAATGGATCG-C
* *** * **** *
11259 TTGAATACTTTAAGG-ACTGAAGTTATAAAAGAAGTCGTAAAATTTTTTTGAGTTTGGAAGGTT-
64 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAAGTTTGACAAGTTCGGAA-GTTC
* * * * * * * * * *
11322 ATCCAGGAACGACGAGAGAAACAATTTTGACATAAGTAAGTTTTTAATTTAAAGGCCAAAAGTTG
128 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
11387 TTTACAAAATGACAAACTATTTA
193 TTTACAAAATGACAAACTATTTA
* * * * * * * * * * * *
11410 AACCAAAAGGTTCGATTTCCCGAGAATGGAATGTTTGAAAAATTGCTCA-ATGAAATGGATTGTC
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCT-AGAAGGAATGGATCG-C
* *** *
11474 TAT-AATACTTTAAGGAACCGAAGTTCTAAAAGAATTTGTAAAAGTTTAACAAGTTC-GAAGGTT
64 T-TGAATACTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAAGTTTGACAAGTTCGGAA-GTT
* * * * * **
11537 CGTCCAAGAACTATGAGAAAAACAATTCCCACGTCAATAAGTTTTTAATTCAAAGATTAAAAAGT
127 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CCAAAAGT
11602 TG-TT---AAATGACAAACTATTTA
191 TGTTTACAAAATGACAAACTATTTA
* ** * * * * * * *
11623 GATCAAATGATGTGATTTTTTGAACATTGAAGGTTCGAAAAATTTCTAGAAGGAATGGATCGCAT
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGAATGGATCGC-T
* * * * *
11688 AGAATACTTTAAGGAACCTAAGTTATAAAATAAC---T-----TCT-A-AA---C---A-TTCAT
65 TGAATACTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAAGTTTGACAAGTTCGGAAGTTCGT
* * *
11736 CCAAGAACTAAGAGAGAAATAATTCTCACGCAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
130 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
*
11801 TACAAAATGACAAAATATTTA
195 TACAAAATGACAAACTATTTA
* * * * * * * * *
11822 GACCGAATGATGCGATTTCTCAAGCATGGAAAGTTTGGAATATTGCTCGAAAGAATCGATCGTCT
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGAATGGATCG-CT
** ** * *
11887 TGAATACTTTAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCAGAAGTTCGT
65 TGAATACTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAAGTTTGACAAGTTCGGAAGTTCGT
* * * * *
11952 CTAAAAACCAAGAGAGACACAATTCTCATGTAAATAAGTTTTTAATTCAAAAACCAAAAGTTGTT
130 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
12017 TACAAAATGACAAACTATTTA
195 TACAAAATGACAAACTATTTA
* * * * *
12038 GACCAAGTGATGCAATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGCAATGGATTGTCT
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGAATGGATCG-CT
** * * *
12103 TGAATACTTTAAGGAACCGAAGTTATAACAA-AA-ATAGTAAAAGTTTTCCTAGTTTGAAAGTTC
65 TGAATACTTTAAGGAACCGAAGTTATAA-AAGAACA-AGTAAAAGTTTGACAAGTTCGGAAGTTC
* * * * *
12166 ATCCAAGAACCAAGAGTGAAACAATT-TACACATAAATAAGTATTTAATTCAAAGACTAAAAGTT
128 GTCCAAGAACCAAGAGAGAAACAATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
* *
12230 GTTTACAAAATGAAAAACTATTTT
192 GTTTACAAAATGACAAACTATTTA
* * * ** * * * *
12254 CACCGAATGATGCATTTTCTCGAGTGTGGAATGTTCAGAATATTGCTCGAAGGAATGGATCATCT
1 GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGAATGGATC-GCT
* ** * * *
12319 TGAATACTTTAACGAATTGAAGTTATAAAAGAA-ATAGTAAAAGCTTGACAAGTTC-AAATGTTT
65 TGAATACTTTAAGGAACCGAAGTTATAAAAGAACA-AGTAAAAGTTTGACAAGTTCGGAA-GTTC
* * * * * *
12382 GTCTAAGAATCAAGAGAGAAATAATTGTCACATAAATATGTTTTTAATTCAAAGACCAAAAGTTG
128 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
12447 T
193 T
12448 GATTTCCCAA
Statistics
Matches: 5688, Mismatches: 1225, Indels: 741
0.74 0.16 0.10
Matches are distributed among these distances:
186 1 0.00
187 5 0.00
188 13 0.00
189 9 0.00
191 1 0.00
192 5 0.00
193 11 0.00
194 21 0.00
195 34 0.01
196 62 0.01
197 5 0.00
198 6 0.00
199 98 0.02
200 5 0.00
201 6 0.00
202 10 0.00
203 24 0.00
204 10 0.00
205 24 0.00
206 13 0.00
207 14 0.00
208 11 0.00
209 115 0.02
210 56 0.01
211 52 0.01
212 21 0.00
213 377 0.07
214 466 0.08
215 983 0.17
216 2060 0.36
217 364 0.06
218 258 0.05
219 58 0.01
220 60 0.01
221 243 0.04
222 28 0.00
223 6 0.00
226 8 0.00
227 2 0.00
229 15 0.00
231 1 0.00
232 7 0.00
234 1 0.00
235 6 0.00
236 11 0.00
237 15 0.00
238 11 0.00
239 4 0.00
240 2 0.00
241 42 0.01
242 1 0.00
243 16 0.00
244 7 0.00
245 4 0.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.29
Consensus pattern (215 bp):
GACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGAATGGATCGCTT
GAATACTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
ACAAAATGACAAACTATTTA
Found at i:5972 original size:21 final size:21
Alignment explanation
Indices: 5946--5987 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
5936 CGAAAGTTCA
5946 TCCAAGAACCAAGAGAGAAAC
1 TCCAAGAACCAAGAGAGAAAC
5967 TCCAAGAACCAAGAGAGAAAC
1 TCCAAGAACCAAGAGAGAAAC
5988 AATTTTCACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.24, G:0.19, T:0.05
Consensus pattern (21 bp):
TCCAAGAACCAAGAGAGAAAC
Found at i:7804 original size:431 final size:428
Alignment explanation
Indices: 5967--12447 Score: 5404
Period size: 431 Copynumber: 15.2 Consensus size: 428
5957 AGAGAGAAAC
* * * * * *
5967 TCCAAGAACCAAGAGAGAAACAATTTTCACATAAATAAGTATTTAATTCAATGACTAAAAGTTTT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-TTTG
* * * * *
6032 TTTACAAAATGGCAAACTATTTTGACCGAATGATG-AGATTTCTCGAGCATGGAATGATCGGAAT
65 TTTACAAAATGACAAACTATTTAGACCGAATGATGCA-ATTTCTCGAGCATGGAATGTTTGGAAA
* * * * * *
6096 ATTGCTTGAAGGATTGTATCATCTTGAATACTTTAAGG-ACTCGAAGTGATAATAAAAGAAAT-A
129 ATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAAC-CGAAGT--T-ATAAAAGAACTCA
* * * * * * *
6159 GTAAAAGTTTGACAAGTTCAGAAGTTTGTCTAAGAATCAAAAGAGAAATAATTCTCATATAAATA
190 -TAAAAGTTT-ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
** * * *
6224 TA-TTTTTAATTCAAAGACCAAAAAGTTGTTCGCAAAATGAAAAACTATTTAGATCGAATGATGC
253 -AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGATAAACTATTTAGACCAAATGATGC
* * * * * *
6288 TACTTCCAGAGCATGGAATGTTCGGAATACTGATCGAAGGAATGGATCGTCTTGAATACTGTAAG
316 AATTTCC-GAGCATGGAATGTTC-GAAAATTGCTCGAA-GAATGGATCGTCTTGAATACTTTAAG
* * *
6353 GAACCAAAGTTATAAAAGAACTCGTAAAAGCTTGACTAGTTC-AGAAGTTCA
378 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCA
* * ** ** *
6404 TCTAAGAACCAA-AGGTGAAACAATTCTCACGTAAATAAGTTTTTAATTTGAAGAGAAAAACTTG
1 TCCAAGAACCAAGA-GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-TTT
* * ** *
6468 GTTTTCAAAATGACAAACTATTTAGACCAAAAAATGCAATTTCCCGAGCATGGAATGTTTGGAAA
64 GTTTACAAAATGACAAACTATTTAGACCGAATGATGCAATTTCTCGAGCATGGAATGTTTGGAAA
* * * *
6533 ATTGCTCGTAGAAATGGATGGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAATAACTCATAAA
129 ATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAA
* * *
6598 AGTATTACTAGTTCGGTAGTTCGTCCAAGAACCAAGAGAGAAACAATTTTCACATAAATAAGTTT
194 AGT-TTACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTT
* * * * *
6663 TTAATTCAACGACCAAAAGTTTTTTACAAAATGATAAACTATTTAAACCAAAAGATTCAATTTTC
258 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGATAAACTATTTAGACCAAATGATGCAA-TTTC
* ** * * * * * * * * *
6728 GGATAATGGAATGTTAGAAAATTGCTTGATGAAGTGGATCAT-TTATAATACTTCAAGCAGCCGG
322 CGAGCATGGAATGTTCGAAAATTGCTCGAAGAA-TGGATCGTCTT-GAATACTTTAAGGAACCGA
** * ** ** * *
6792 AGTTATATTAGAAATATTAAAAGTTTTCCTAGTTTGAAAGTTCA
385 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCA
* * * *
6836 T-CATAGAACCAAGAGAGAAACAATT-TACACATAAATAAGTATTTAACTCAACGACCAAAAGTT
1 TCCA-AGAACCAAGAGAGAAACAATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAA--T
* * * * *
6899 TTTTTTACAAAATGATAAACTATTTTGACCGAATGATGCGATTTCTCGAGCATGGAAT-TTTCGA
62 TTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCAATTTCTCGAGCATGGAATGTTTGGA
* * * * * *
6963 AATATTGCTCAAAGGATTGGATCATCTTGATTACTTTAAGGAACCGAAGTTATTATAAAAGAAAT
127 AA-ATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCGAAG---TTATAAAAGAACT
* * * * * * * * *
7028 -AGTAAAAGCTTGACAAGTTCAGATGTTTGTCTAAGAATCAAAAGAGAAATAATTCTCACATAAG
188 CA-TAAAAG-TTTACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAA
* * * * *
7092 TATA-TTTTTACTTCAAAGGTA-AAAAAGTTGTTTTGCAAAATGACAAACTATTTAGACCGAATG
251 TA-AGTTTTTAATTCAAA-G-ACCAAAAGTTG-TTTACAAAATGATAAACTATTTAGACCAAATG
* * * *
7155 ATGCTATTTCCCGAGCATGGAATGTTCGGAATATTGATCGAAGGAATGGATCGTCTTAAATACTT
312 ATGCAATTT-CCGAGCATGGAATGTTC-GAAAATTGCTCGAA-GAATGGATCGTCTTGAATACTT
* * * * * * **
7220 TAAGGAACCAAAGTTACAAAAGATCTCATAAAAGGTTGACTAGTTC-AGAAGTTTG
374 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCA
* **
7275 TCTAAGAACCGAAG-GAGAAAC--TTGCT--CGTAGAAT--GTTTTTAATTTGAAGACCAAAACT
1 TCCAAGAACC-AAGAGAGAAACAATT-CTCACGTA-AATAAGTTTTTAATTCAAAGACCAAAA-T
* * * * * *
7333 TGGTTTTCAAAATGACAAACTATCTAGACCAAAAGATGCAATTTCCCGAGCATGGAATGTTTGGA
62 TTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCAATTTCTCGAGCATGGAATGTTTGGA
* * *
7398 AAATTGCTCGTAGAAATGGATGGTCTTGAATTA-TTTAAGGAACCGAAGTTATAAAATAACTCAT
127 AAATTGCTCGAAGAAATGGATCGTCTTGAA-TACTTTAAGGAACCGAAGTTATAAAAGAACTCAT
* * * * *
7462 AAAAGTATTACTAGTTTGGTAGTTCATCCAAGAACCAAGAGAGAAACAATTTTCACATAAATAAG
191 AAAAGT-TTACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAG
* * *
7527 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGATAAACTATTTAAACCAAAAGATTCAATT
255 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGATAAACTATTTAGACCAAATGATGCAATT
* * * * * *
7592 TCCG-GATAGTGGAATGTTCGAAAATTGCTTGATGAAGTGGATCAT-TTATAATACTTCAAGGAA
320 TCCGAG-CA-TGGAATGTTCGAAAATTGCTCGAAGAA-TGGATCGTCTT-GAATACTTTAAGGAA
* * * * * *
7655 CCAAAGTTTTAAAAGAAGTTGTAAAAGTTTGACAAGTTTGGAAGTTCA
381 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCA
* * * * *
7703 TCCAAGAACTAAGAGAGAAACAATTGTAATGTAAATAAGTTTTTAATTCAAAGACCAAAATTTAT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGT
* *
7768 TTACAAAATGACAAAATATTTAGACCGAATGATGCAATTTCTCGAGCATGGAATGTTTGGAATAT
66 TTACAAAATGACAAACTATTTAGACCGAATGATGCAATTTCTCGAGCATGGAATGTTTGGAAAAT
**
7833 TGCTCGAA-ACAATGGATCGTCTTGAATACTTTAAGGAACC-AATGTTATAAAAGAACTTGTAAA
131 TGCTCGAAGA-AATGGATCGTCTTGAATACTTTAAGGAACCGAA-GTTATAAAAGAACTCATAAA
* * * * * *
7896 AGCTTGAAAAGTT-GAAAAGTTCGTCTAAGAACCAAGAAAGAAACAATTCTCACGTAAATAAGTT
194 AG-TTTACAAGTTCG-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
** * *
7960 TTTAATTGTAAGACTAAAAGTTGTTTACAAAATGACT-AACTATTTAGACCAAGTGATGCAATTT
257 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA-TAAACTATTTAGACCAAATGATGCAATTT
* * * * *
8024 CTCGAGCATGGAATGTTTGGAAAACTGCTCGAAAAAGTGGATTGTCTTGAATACTTTAAGGAGCC
321 C-CGAGCATGGAATG-TTCGAAAATTGCTCGAAGAA-TGGATCGTCTTGAATACTTTAAGGAACC
* * ** * *
8089 GAAGTTA-AAATAGAAATAGTAAAAGTTTTCCTAGTTCGAAAGTTCG
383 GAAGTTATAAA-AGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCA
* * * * * *
8135 TCCAAGAACCAAGAGAGAAGCAATT-TACACATAAATATGTATTTAATTCAATGACCAAAAGTTG
1 TCCAAGAACCAAGAGAGAAACAATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTG
* * * * * **
8199 TTTACAAAATGACAAACTATTTAAACCAAAAGATTCAATTT-TCGGAGAATGGAATG-TTCAAAA
65 TTTACAAAATGACAAACTATTTAGACCGAATGATGCAATTTCTC-GAGCATGGAATGTTTGGAAA
* * * * * * **
8262 ATTGCTCGATGAAGTGGATCAT-TTATAATACTTCAAGGAACCGAAGTTTTAAAAGAACTTGTAA
129 ATTGCTCGAAGAAATGGATCGTCTT-GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAA
* * * *
8326 AAGTTTGACAAGTTCGGAGGTTCGTCCAAGAACCAAGAGAGAAACAATTCCCACGTCAATAAGTT
193 AAGTTT-ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
* * *
8391 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGATCAAATGATGCGATTTT
257 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGATAAACTATTTAGACCAAATGATGC-AATTT
* * * * * * *
8456 TCGACCATTGAATGTTCGCAAAATTTG-TAGAATGAATGGATC-ACATAGAATGCTTTAAGGAAC
321 CCGAGCATGGAATGTTCG-AAAA-TTGCTCGAA-GAATGGATCGTC-TTGAATACTTTAAGGAAC
** * *
8519 TTATGTTATAAAAGAACTCGTAAAAGCTTGACAAGTTCGAAAGTTCA
382 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCA
* * * *
8566 TCCAAGAACTAAGAGAGATACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAAGTTGT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGT
* *
8631 TTACAAAATGACTAACTATTTAGACC-AAGTGATGCAATTTCTGGAGCATGGAATGTTTGGAAAA
66 TTACAAAATGACAAACTATTTAGACCGAA-TGATGCAATTTCTCGAGCATGGAATGTTTGGAAAA
*** *
8695 TTGCTCGAA-AAAGTGGATCGTCTTGAATACTTTAAGGTGTCGAAGTTA-AAATAGAAAT-AGTA
130 TTGCTCGAAGAAA-TGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA-AGAACTCA-TA
* * * *
8757 AAAGTTTTTCTAGTTTGAAAGTTCGTCACAA-AACCAAGAGAGAAACAATT-TCCACATAAATAA
192 AAAG-TTTACAAGTTCGGAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCT-CACATAAATAA
* * * * * ** *
8820 GTATTTAACTCAATGACCAAAAGGTTTTTTTACAAAATGATAAACTATTTTGACTGAATGATGCG
254 GTTTTTAATTCAAAGACCAAAA-G-TTGTTTACAAAATGATAAACTATTTAGACCAAATGATGCA
* * * * * *
8885 ATTTCCCAATCACGGAATTTTCGAAATATTGCTCGAAGGATTGGATCCTCTTGAATACTTTAAGG
317 ATTT-CCGAGCATGGAATGTTCGAAA-ATTGCTCGAA-GAATGGATCGTCTTGAATACTTTAAGG
*
8950 AACCGAAGTTATTATAA-AA---G-AAATAGTTTGGA-AA-----AAA-TTC-
379 AACCGAAGTTA-TAAAAGAACTCGTAAA-AGTTT-GACAAGTTCGAAAGTTCA
* * * **** * * * * *
8990 T-CACGTA--AATA-AGTTTTTAATT-TGAAGATCAA-AACTTGGTT--TT-------CAAAA--
1 TCCAAGAACCAAGAGAG-AAACAATTCTCACG-TAAATAAGTT-TTTAATTCAAAGACCAAAATT
* * * *
9038 TG---ACAAACT-ATCTAGACCA---A-AA-----GATGCAATTTCTCGAGCATGGAATGTTTGG
63 TGTTTACAAAATGA-C-AAACTATTTAGACCGAATGATGCAATTTCTCGAGCATGGAATGTTTGG
* * * * *
9090 AAAATTGCTCGTAGAAATGGATGGTCTTGAATTCTTTCAGGAACCGAAGTTATAAAATAACTCAT
126 AAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCAT
* * * * * * *
9155 AAAAGTTTTACTAGTTTGGTAGTTCGTCCAAGAAGCAAGAGAGAAGCAATTTTAACATAAATAAG
191 AAAAG-TTTACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAG
* * * * * *
9220 TTTTTAATTCAAAGACCAAAAATTGTTTATAGAATGATAAACTATTTAAACCAAAAGATTCAATT
255 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGATAAACTATTTAGACCAAATGATGCAATT
** * * * *
9285 TCCAGATAATGGAATGTTCGAAAATTGCTCGATGAAGTGGATCAT-TTATAATACTCTAAGGAAC
320 TCC-GAGCATGGAATGTTCGAAAATTGCTCGAAGAA-TGGATCGTCTT-GAATACTTTAAGGAAC
* * * *
9349 CGAAGTTGTAAAAGAACTTGTAAAAGTTTGACAAGTTTGGAAGTTCA
382 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCA
* *
9396 TCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCAATTCAAAGACCAAAATTTGT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGT
* * * *
9461 TTACAAAATGAAAAAATATTTAGACCGAATGTTGCAATTTCTCGAGCATGGAATGTTTGGAATAT
66 TTACAAAATGACAAACTATTTAGACCGAATGATGCAATTTCTCGAGCATGGAATGTTTGGAAAAT
*
9526 TGCTCGAA-ACAATGGATCGTCTTGAATACTTTAAGGAACC-AATGTTATAAAAGAACTCGTAAA
131 TGCTCGAAGA-AATGGATCGTCTTGAATACTTTAAGGAACCGAA-GTTATAAAAGAACTCATAAA
* * * * * **
9589 AGCTTGAAAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAATAATTCTCAGGTAAATAAGTTT
194 AG-TTTACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTT
* * *
9654 TTAATTGAAAGACCAAAATTTGTTTACAAAATGACT-AACTATTTAGACCAAGTGATGCAATTTC
258 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGA-TAAACTATTTAGACCAAATGATGCAATTTC
* * *
9718 TCGAGCATGGAATGTTTGGAAAATTGCTCGAAAAATTGGATCGTCTTGAATACTTTAAGGAGCCG
322 -CGAGCATGGAATG-TTCGAAAATTGCTCGAAGAA-TGGATCGTCTTGAATACTTTAAGGAACCG
* * * ** *
9783 AAGTTATAATAGAAATAGTAAAAGTTTTCCTAGTTCGAAAGTTCA
384 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCA
* * * * * *
9828 TCCAAGAACC-A-AGAGAAGCAATT-TACACATAATTAAGTATTTAATTCAATGACCAAAAGTTG
1 TCCAAGAACCAAGAGAGAAACAATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTG
* * ** * *
9890 TTTACAAAATGACAAACTATTTTGACAGAATGATGTGATTTCTCGAGCATGGAATGTTCGGAATA
65 TTTACAAAATGACAAACTATTTAGACCGAATGATGCAATTTCTCGAGCATGGAATGTTTGGAAAA
* * * * *
9955 TTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAAAAAT-AGTAAA
130 TTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCA-TAAA
* * * * * * * * * *
10019 GGCTTGACAAGTTCAGAAGTTTGTCTAAGAATCAAGGGAGAAATAA-TCTCACATAAATATGATT
194 AG-TTTACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTT
* ** * * *
10083 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGATAAAATGATGTGATTTTT
258 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGATAAACTATTTAGACCAAATGATG-CAATTTC
* * * * * * * *
10148 CGAACATGCAATGTTCGAAAAATTTCTAGAAGGAGTGGATC-ACATAGAATACTTTAAGGAACCT
322 CGAGCATGGAATGTTCG-AAAATTGCTCGAA-GAATGGATCGTC-TTGAATACTTTAAGGAACCG
* *
10212 AAGTTATAAAAGAACT-GATAAACGTTTGACTAGTTCGAAAGTTCA
384 AAGTTATAAAAGAACTCG-TAAAAGTTTGACAAGTTCGAAAGTTCA
* * * * * *
10257 TCCAAGAACTAAGAGAGAAACAATTCCCACGTCATTAAGTTTTTAATTCAAAGGCCAAAAGTTGT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGT
* * *
10322 TTACAAAATGACAAAATATTTAGACCGAATGATGCAATTTCCCGAGCATGGAATGTTAGGAATAA
66 TTACAAAATGACAAACTATTTAGACCGAATGATGCAATTTCTCGAGCATGGAATGTTTGGAA-AA
* * ** *
10387 -TGCTCGAA-AGAATGGATCATCTTGAATACTTTAA-TAAATGAAAGTTATAAAAGAACTCGTAA
130 TTGCTCGAAGA-AATGGATCGTCTTGAATACTTTAAGGAACCG-AAGTTATAAAAGAACTCATAA
* * ** * * ** *
10449 AAGCTTGAAAAGTTTAGAAGTTTGTCTAAGAATTAAGAGAGAAACAA-T-TCACGTAAATAAGTT
193 AAG-TTTACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
* * * *
10512 TTTAATTGAAAGACCAAAAGTTGTTTACAAAATGACT-AACTATTTAGACCAAGTGACGTAATTT
257 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA-TAAACTATTTAGACCAAATGATGCAATTT
* * * *
10576 CTCGAGCATGGAATGTTTGGGAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAGCA
321 C-CGAGCATGGAATG-TTCGAAAATTGCTCGAAG-AATGGATCGTCTTGAATACTTTAAGGAACC
* * ** * * *
10641 GAAGTTAT---AGAAATAGTAAAAGTTTTCCTAGTTTGAAAGTTCT
383 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCA
* * * *
10684 TCACAA-AACCAAGAGAGAAACAATT-T-ACAGATAAATAGGTATTTAATTAAAAGACCAAAAGT
1 TC-CAAGAACCAAGAGAGAAACAATTCTCAC-G-TAAATAAGTTTTTAATTCAAAGACCAAAATT
* * * * * *
10746 TGTTTACAAAATGACAAACTATTTTGACCGAATGATGCGATTTCCCAAGTATGGAATG-TTCGAA
63 TGTTTACAAAATGACAAACTATTTAGACCGAATGATGCAATTTCTCGAGCATGGAATGTTTGGAA
* * * * *
10810 ATATTGCTCGAAGGAATTGATCATCTTGAGTACTTTAAGGAACCGAAGTTATAAAAGAAATAGCA
128 A-ATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT--CA
* * * ** * * * * *
10875 -AAAACTTGACAAGTTCAGAAGTTTTTCTAAGAATCAAGAGAGAAATAA-TCTCACGTAAAT-AT
190 TAAAAGTTTACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAG
* * ** ***
10937 TATTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTAGACTGAATGATATGAT
255 T-TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGATAAACTATTTAGACCAAATGATGCAAT
11002 TTCCGAGCATGGAATGTTCGAAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
319 TTCCGAGCATGGAATGTTCGAAA-ATTGCTCGAA-GAATGGATCGTCTTGAATACTTTAAGGAAC
** * *
11067 AAAAGTTATAAAAGAACTCGTAAAAGCTTGACTAA-TTC-AGAAGTTCG
382 CGAAGTTATAAAAGAACTCGTAAAAGTTTGAC-AAGTTCGA-AAGTTCA
* * *
11114 TCTAAGAACCAA-AGGAGAAACAATTCTCAC-TAAAATAAG--TTT--TT--AGGACAAAAACTT
1 TCCAAGAACCAAGA-GAGAAACAATTCTCACGT-AAATAAGTTTTTAATTCAAAGACCAAAA-TT
* * * * * *
11171 T-TTTTCAAAATGGCAAACTATTTAGACCAAATGATGCAACTTATCGAGCATGGAGTGTTTGGAA
63 TGTTTACAAAATGACAAACTATTTAGACCGAATGATGCAATTTCTCGAGCATGGAATGTTTGGAA
* * * * * *
11235 AATTTCTCAAAGAAATGGATGGTCTTGAATACTTTAAGG-ACTGAAGTTATAAAAGAAGTCGTAA
128 AATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAA
* *** * * * * * * * *
11299 AATTTTTTTGAGTTTGGAAGGTT-ATCCAGGAACGACGAGAGAAACAATTTTGACATAAGTAAGT
193 AA-GTTTACAAGTTCGGAA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGT
* * * * * * * *
11363 TTTTAATTTAAAGGCCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAAAGGTTCGATTT
256 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGATAAACTATTTAGACCAAATGATGCAATTT
* * *
11428 CCCGAGAATGGAATGTTTGAAAAATTGCTC-AATGAAATGGATTGTCTAT-AATACTTTAAGGAA
321 -CCGAGCATGGAATGTTCG-AAAATTGCTCGAA-G-AATGGATCGTCT-TGAATACTTTAAGGAA
* * * * * *
11491 CCGAAGTTCTAAAAGAATTTGTAAAAGTTTAACAAGTTCGAAGGTTCG
381 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCA
* * * * * ** *
11539 TCCAAGAACTATGAGAAAAACAATTCCCACGTCAATAAGTTTTTAATTCAAAGATTAAAAAGTTG
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CCAAAATTTG
* * ** * * * * * * *
11604 -TT---AAATGACAAACTATTTAGATCAAATGATGTGATTTTTTGAACATTGAAGGTTCGAAAAA
65 TTTACAAAATGACAAACTATTTAGACCGAATGATGCAATTTCTCGAGCATGGAATGTTTGGAAAA
* * * * * *
11665 TTTCTAGAAGGAATGGATCG-CATAGAATACTTTAAGGAACCTAAGTTATAAAATAACTTC-T--
130 TTGCTCGAAGAAATGGATCGTC-TTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC-TCATAA
* * **
11726 AA----AC-A-TTC---A-----TCCAAGAACTAAGAGAGAAATAATTCTCACGCAAATAAGTTT
193 AAGTTTACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTT
* * * *
11777 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAATATTTAGACCGAATGATGCGATTTCT
258 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGATAAACTATTTAGACCAAATGATGCAATTTC-
* * * * * **
11842 CAAGCATGGAAAGTTTGGAATATTGCTCGAAAGAATCGATCGTCTTGAATACTTTAAGGAACTAA
322 CGAGCATGGAATG-TTCGAAAATTGCTCG-AAGAATGGATCGTCTTGAATACTTTAAGGAACCGA
* *
11907 AGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTTC-AGAAGTTCG
385 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCA
* * * * * *
11951 TCTAAAAACCAAGAGAGACACAATTCTCATGTAAATAAGTTTTTAATTCAAAAACCAAAAGTTGT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGT
* *
12016 TTACAAAATGACAAACTATTTAGACC-AAGTGATGCAATTTCTCGAGCATGGAATGTTCGAAAAA
66 TTACAAAATGACAAACTATTTAGACCGAA-TGATGCAATTTCTCGAGCATGGAATGTTTGGAAAA
* * *
12080 TTGCTCGAAGCAATGGATTGTCTTGAATACTTTAAGGAACCGAAGTTATAACAA-AAAT-AGTAA
130 TTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA-AAGAACTCA-TAA
* * * * * *
12143 AAGTTTTCCTAGTTTGAAAGTTCATCCAAGAACCAAGAGTGAAACAATT-TACACATAAATAAGT
193 AAG-TTTACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGT
* * * ** * *
12207 ATTTAATTCAAAGACTAAAAGTTGTTTACAAAATGAAAAACTATTTTCACCGAATGATGCATTTT
256 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGATAAACTATTTAGACCAAATGATGCAATTT
** * * * **
12272 CTCGAGTGTGGAATGTTCAGAATATTGCTCGAAGGAATGGATCATCTTGAATACTTTAACGAATT
321 C-CGAGCATGGAATGTTC-GAAAATTGCTCGAA-GAATGGATCGTCTTGAATACTTTAAGGAACC
* * * **
12337 GAAGTTATAAAAGAAATAGTAAAAGCTTGACAAGTTC-AAATGTTTG
383 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA-GTTCA
* * * * * * *
12383 TCTAAGAATCAAGAGAGAAATAATTGTCACATAAATATGTTTTTAATTCAAAGACCAAAAGTTGT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGT
12448 GATTTCCCAA
Statistics
Matches: 4866, Mismatches: 910, Indels: 541
0.77 0.14 0.09
Matches are distributed among these distances:
395 8 0.00
396 41 0.01
397 49 0.01
398 5 0.00
399 154 0.03
400 11 0.00
404 3 0.00
405 4 0.00
406 2 0.00
407 11 0.00
408 3 0.00
409 11 0.00
410 11 0.00
411 13 0.00
412 220 0.05
413 4 0.00
414 5 0.00
415 94 0.02
416 3 0.00
417 3 0.00
418 5 0.00
419 2 0.00
420 13 0.00
421 15 0.00
422 8 0.00
423 55 0.01
424 159 0.03
425 129 0.03
426 24 0.00
427 286 0.06
428 246 0.05
429 232 0.05
430 405 0.08
431 1064 0.22
432 762 0.16
433 161 0.03
434 245 0.05
435 36 0.01
436 76 0.02
437 156 0.03
438 49 0.01
439 74 0.02
440 9 0.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (428 bp):
TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGT
TTACAAAATGACAAACTATTTAGACCGAATGATGCAATTTCTCGAGCATGGAATGTTTGGAAAAT
TGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAG
TTTACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTA
ATTCAAAGACCAAAAGTTGTTTACAAAATGATAAACTATTTAGACCAAATGATGCAATTTCCGAG
CATGGAATGTTCGAAAATTGCTCGAAGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCA
Found at i:10434 original size:645 final size:643
Alignment explanation
Indices: 4974--12447 Score: 5335
Period size: 647 Copynumber: 11.6 Consensus size: 643
4964 TTTCCGGAGA
* * *
4974 ATGGAATGTTCG-AAAATTGCTCGATG-AAGTGGATCAT-TTATAATACTTTAAGGAATCGAAGT
1 ATGGAATGTTCGAAAAATTGCTCGAAGCAA-TGGATC-TCTT-GAATACTTTAAGGAACCGAAGT
* * * *
5036 TGTAAAAGAACATG-TAAAAGTTTGACAAGTTCGAAGGTTCGTCCAAGAACCAAGAGAGAAACAA
63 TATAAAAGAA-ATGATAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACTAAGAGAGAAACAA
* * * * *
5100 TTCCCACGTCAAGAAGTTTTTAATTCAAAGACCAAAAGTTCTTTACAAAATGACAAACTATTTAT
127 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAG
* * * ** * * * ** * * * * * *
5165 ATCAAACGATGTGATTTTTAGAACATTAAATGTT-CGAAAAATTTG-TAGGAGGAATTGATCG-C
192 ACCGAATGATGCAATTTCTCGAGCATGGAATGTTAGGAATAA-TTGCTCGAAAGAATGGATCGTC
* * * * * *
5227 ATAGAATACTTTAAGGAACCTAAGTTATAAAAGAACA-CGTAAAAG-TTTGACAAGTTTGGAAGT
256 -TTGAATACTTTAA-GAAACGAAGTTATAAAAGAA-ATAGTAAAAGCTTT-ACTAG-TT-AAAGT
* * * *
5290 TCATCCAAGAACTAAGAGAGAAACAATTCT-CACGTAAATAAGTTTCTAATTGAAAGACCAAAAG
315 TCGTCCAAGAAC-AAGAGAGAAACAATT-TACACATAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * * *
5354 TTGTTTACAAAATGACTAACTGTTTAGACCAAGTGATGCAATTTGTCGAGCATGAAATGTTTGGA
378 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTAATTTCTCGAGCATGGAATGTTCGGA
* * * * * *
5419 AAATTGCACGAA-AAAGTGGATCGTCTTGAATACTTTAAGCAGCCGAAGTTATAATAGAAATAGT
443 AAATTGCTCGAAGGAA-TGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAAATAGT
** * * **
5483 AAAAGTTTTCCTAGTT-TGAAAGTTCGT-CATAGAACCAAGAGAGAAACAATT-TACACATAAAT
507 AAAAGTTTGACAAGTTCAG-AAGTTTATCCA-AGAA-CAAGAGAGAAACAATTCT-CACATAAAT
* * * * * * *
5545 AAGTATTTAACTCAATGACCAAAAGTTTTTTTTACAAAATGATAAACTATTTTGACCGAATGATG
568 AAGTTTTTAATTCAAAGACCAAAAG--TTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
*
5610 CGATTTCTCGAGC
631 CGATTTCTCGAAC
* * * * * * * * * *
5623 ATGAAATTTTCGGAATATTGCTCGAAGGATTGGATCATATTGAATACATTAAGGAACCAAATTTA
1 ATGGAATGTTCGAAAAATTGCTCGAAGCAATGGATC-TCTTGAATACTTTAAGGAACCGAA-GT-
* ** * *
5688 TAATAAAAGAAAT-AGTAAAAGCTTGACAAGTTC-AGAAGTTTGTCTAAGAA-TCAAAAGAGAAA
63 T-ATAAAAGAAATGA-TAAAAGTTTGACAAGTTCGA-AAGTTCATCCAAGAACT-AAGAGAGAAA
* * ** * * *
5750 TAATTCTCACATAAATATTTTTTTAATTGAAAGACCAAAAAGTTGTTTTCAAAATGACAAACAAT
124 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTAT
* * *
5815 TTAGACC-AAGTGATGCAATTTCTCGAGCAT-GAATATTCGCAA-AATTGCTC-AAAGAAATGGA
188 TTAGACCGAA-TGATGCAATTTCTCGAGCATGGAATGTTAGGAATAATTGCTCGAAAG-AATGGA
* * * * * * *
5876 TCATCATGAATACTTTAAGGAACCGAAATTATAACAGAAATAGTAAAAGTTTTCCTAGTTCGAAA
251 TCGTCTTGAATACTTTAA-GAAACGAAGTTATAAAAGAAATAGTAAAAGCTTTACTAGTT--AAA
*
5941 GTTCATCCAAGAACCAAGAGAGAAACTCCAAGAACCAAGAGAGAAACAATTTTCACATAAATAAG
313 G-T--T--------C------G----TCCAAGAA-CAAGAGAGAAACAATTTACACATAAATAAG
* * * * * * *
6006 TATTTAATTCAATGACTAAAAGTTTTTTTACAAAATGGCAAACTATTTTGACCGAATGATG-AGA
356 TTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTA-A
* * * * * *
6070 TTTCTCGAGCATGGAATGATCGGAATATTGCTTGAAGGATTGTATCATCTTGAATACTTTAAGG-
419 TTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* *
6134 ACTCGAAGTGATAATAAAAGAAATAGTAAAAGTTTGACAAGTTCAGAAGTTTGTCTAAGAATCAA
484 ACT-GAAGT--T-ATAAAAGAAATAGTAAAAGTTTGACAAGTTCAGAAGTTTATCCAAGAA-CAA
* * * **
6199 AAGAGAAATAATTCTCATATAAATATA-TTTTTAATTCAAAGACCAAAAAGTTGTTCGCAAAATG
544 GAGAGAAACAATTCTCACATAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATG
* * * * * *
6263 AAAAACTATTTAGATCGAATGATGCTACTTC-CAGAGC
607 ACAAACTATTTAGACCAAATGATGCGATTTCTC-GAAC
* * * * * * *
6300 ATGGAATGTTCGGAATACTGATCGAAGGAATGGATCGTCTTGAATACTGTAAGGAACCAAAGTTA
1 ATGGAATGTTCGAAAAATTGCTCGAAGCAATGGATC-TCTTGAATACTTTAAGGAACCGAAGTTA
* * * * * *
6365 TAAAAGAACTCG-TAAAAGCTTGACTAGTTC-AGAAGTTCATCTAAGAACCAA-AGGTGAAACAA
65 TAAAAGAAAT-GATAAAAGTTTGACAAGTTCGA-AAGTTCATCCAAGAACTAAGA-GAGAAACAA
** ** * *
6427 TTCTCACGTAAATAAGTTTTTAATTTGAAGAGAAAAACTTGGTTTTCAAAATGACAAACTATTTA
127 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATTTA
* ** * * * *
6492 GACCAAAAAATGCAATTTCCCGAGCATGGAATGTTTGGAA-AATTGCTCG-TAGAAATGGATGGT
191 GACCGAATGATGCAATTTCTCGAGCATGGAATGTTAGGAATAATTGCTCGAAAG-AATGGATCGT
* * * * **
6555 CTTGAATTCTTTAAGGAACCGAAGTTATAAAATAACTCA-TAAAAG-TATTACTAGTTCGGTAGT
255 CTTGAATACTTTAA-GAAACGAAGTTATAAAAGAAAT-AGTAAAAGCT-TTACTAGTT--AAAGT
* *
6618 TCGTCCAAGAACCAAGAGAGAAACAATTTTCACATAAATAAGTTTTTAATTCAACGACCAAAAGT
315 TCGTCCAAGAA-CAAGAGAGAAACAATTTACACATAAATAAGTTTTTAATTCAAAGACCAAAAGT
* * * * ** *
6683 TTTTTACAAAATGATAAACTATTTAAACCAAAAGAT-TCAATTT-TCGGATAATGGAATGTT-AG
379 TGTTTACAAAATGACAAACTATTTAGACCAAATGATGT-AATTTCTC-GAGCATGGAATGTTCGG
* * * * * * * * * **
6745 AAAATTGCTTG-ATGAAGTGGATCAT-TTATAATACTTCAAGCAGCCGGAGTTATATTAGAAATA
442 AAAATTGCTCGAAGGAA-TGGATCGTCTT-GAATACTTTAAGGAACTGAAGTTATAAAAGAAATA
* ** * * *
6808 TTAAAAGTTTTCCTAGTT-TGAAAGTTCAT-CATAGAACCAAGAGAGAAACAATT-TACACATAA
505 GTAAAAGTTTGACAAGTTCAG-AAGTTTATCCA-AGAA-CAAGAGAGAAACAATTCT-CACATAA
* * * * * * *
6870 ATAAGTATTTAACTCAACGACCAAAAGTTTTTTTTACAAAATGATAAACTATTTTGACCGAATGA
566 ATAAGTTTTTAATTCAAAGACCAAAAG--TTGTTTACAAAATGACAAACTATTTAGACCAAATGA
*
6935 TGCGATTTCTCGAGC
629 TGCGATTTCTCGAAC
* * * * * *
6950 ATGGAATTTTCGAAATATTGCTCAAAGGATTGGATCATCTTGATTACTTTAAGGAACCGAAGTTA
1 ATGGAATGTTCGAAAAATTGCTCGAAGCAATGGATC-TCTTGAATACTTTAAGGAACCGAAG---
* * ** * *
7015 TTATAAAAGAAAT-AGTAAAAGCTTGACAAGTTC-AGATGTTTGTCTAAGAA-TCAAAAGAGAAA
62 TTATAAAAGAAATGA-TAAAAGTTTGACAAGTTCGA-AAGTTCATCCAAGAACT-AAGAGAGAAA
* * * * * *
7077 TAATTCTCACATAAGTATA-TTTTTACTTCAAAGGTA-AAAAAGTTGTTTTGCAAAATGACAAAC
124 CAATTCTCACGTAAATA-AGTTTTTAATTCAAA-G-ACCAAAAGTTG-TTTACAAAATGACAAAC
* * * * *
7140 TATTTAGACCGAATGATGCTATTTCCCGAGCATGGAATGTTCGGAAT-ATTGATCGAAGGAATGG
185 TATTTAGACCGAATGATGCAATTTCTCGAGCATGGAATGTTAGGAATAATTGCTCGAAAGAATGG
* * * * ** * *
7204 ATCGTCTTAAATACTTTAAGGAACCAAAGTTACAAAAGATCTCA-TAAAAGGTTGACTAGTTCAG
250 ATCGTCTTGAATACTTTAA-GAAACGAAGTTATAAAAGAAAT-AGTAAAAGCTTTACTAGTT-A-
* * * * * **
7268 AAGTTTGTCTAAGAACCGAAG-GAGAAAC---TTGCTCGTAGAAT--GTTTTTAATTTGAAGACC
311 AAGTTCGTCCAAGAA-C-AAGAGAGAAACAATTTACACATA-AATAAGTTTTTAATTCAAAGACC
* * * * * *
7327 AAAACTTGGTTTTCAAAATGACAAACTATCTAGACCAAAAGATGCAATTTCCCGAGCATGGAATG
373 AAAAGTT-GTTTACAAAATGACAAACTATTTAGACCAAATGATGTAATTTCTCGAGCATGGAATG
* * * * * *
7392 TTTGGAAAATTGCTCGTAGAAATGGATGGTCTTGAATTA-TTTAAGGAACCGAAGTTATAAAATA
437 TTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAA-TACTTTAAGGAACTGAAGTTATAAAAGA
* * ** * * *
7456 ACTCA-TAAAAGTATT-ACTAGTTTGGTAGTTCATCCAAGAACCAAGAGAGAAACAATTTTCACA
501 AAT-AGTAAAAGT-TTGACAAGTTCAGAAGTTTATCCAAGAA-CAAGAGAGAAACAATTCTCACA
* * *
7519 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGATAAACTATTTAAACCAAAAG
563 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * *
7584 ATTCAATTTC-CGGAT
628 ATGCGATTTCTCGAAC
* * * * *
7599 AGTGGAATGTTCG-AAAATTGCTTGATG-AAGTGGATCAT-TTATAATACTTCAAGGAACCAAAG
1 A-TGGAATGTTCGAAAAATTGCTCGAAGCAA-TGGATC-TCTT-GAATACTTTAAGGAACCGAAG
* * * *
7661 TTTTAAAAGAAGTTG-TAAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAACTAAGAGAGAAACA
62 TTATAAAAGAA-ATGATAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACTAAGAGAGAAACA
* * * * * *
7725 ATTGTAATGTAAATAAGTTTTTAATTCAAAGACCAAAATTTATTTACAAAATGACAAAATATTTA
126 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTA
* *
7790 GACCGAATGATGCAATTTCTCGAGCATGGAATGTTTGGAAT-ATTGCTCGAAACAATGGATCGTC
191 GACCGAATGATGCAATTTCTCGAGCATGGAATGTTAGGAATAATTGCTCGAAAGAATGGATCGTC
* * * * * **
7854 TTGAATACTTTAAGGAACCAATGTTATAAAAGAACTTGTAAAAGCTTGAAAAGTTGAAAAGTTCG
256 TTGAATACTTTAAGAAACGAA-GTTATAAAAGAAATAGTAAAAGCTTTACTAGTT--AAAGTTCG
* * * ** *
7919 TCTAAGAACCAAGAAAGAAACAATTCT-CACGTAAATAAGTTTTTAATTGTAAGACTAAAAGTTG
318 TCCAAGAA-CAAGAGAGAAACAATT-TACACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * * *
7983 TTTACAAAATGACTAACTATTTAGACCAAGTGATGCAATTTCTCGAGCATGGAATGTTTGGAAAA
381 TTTACAAAATGACAAACTATTTAGACCAAATGATGTAATTTCTCGAGCATGGAATGTTCGGAAAA
* * * * *
8048 CTGCTCGAA-AAAGTGGATTGTCTTGAATACTTTAAGGAGCCGAAGTTA-AAATAGAAATAGTAA
446 TTGCTCGAAGGAA-TGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAA-AGAAATAGTAA
** * ** * *
8111 AAGTTTTCCTAGTTC-GAAAGTTCGTCCAAGAACCAAGAGAGAAGCAATT-TACACATAAATATG
509 AAGTTTGACAAGTTCAG-AAGTTTATCCAAGAA-CAAGAGAGAAACAATTCT-CACATAAATAAG
* * * * * *
8174 TATTTAATTCAATGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAAAGATTCAATT
571 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
8239 T-TCGGAGA-
636 TCTC-GA-AC
* * *
8247 ATGGAATGTTC-AAAAATTGCTCGATG-AAGTGGATCAT-TTATAATACTTCAAGGAACCGAAGT
1 ATGGAATGTTCGAAAAATTGCTCGAAGCAA-TGGATC-TCTT-GAATACTTTAAGGAACCGAAGT
* * * * * *
8309 TTTAAAAGAACTTG-TAAAAGTTTGACAAGTTCGGAGGTTCGTCCAAGAACCAAGAGAGAAACAA
63 TATAAAAGAA-ATGATAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACTAAGAGAGAAACAA
* *
8373 TTCCCACGTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAG
127 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAG
* * * * * * * * * * *
8438 ATCAAATGATGCGATTTTTCGACCATTGAATGTTCGCAA-AATTTG-TAGAATGAATGGATC-AC
192 ACCGAATGATGCAATTTCTCGAGCATGGAATGTTAGGAATAA-TTGCTCGAAAGAATGGATCGTC
* * * * * * * * *
8500 ATAGAATGCTTTAAGGAACTTATGTTATAAAAGAACTCGTAAAAGCTTGACAAGTTCGAAAGTTC
256 -TTGAATACTTTAAGAAAC-GAAGTTATAAAAGAAATAGTAAAAGCTTTACTAGTT--AAAGTTC
* * * *
8565 ATCCAAGAACTAAGAGAGATACAATTCT-CACGTAAATAAGTTTTTAATTGAAAGACCAAAAGTT
317 GTCCAAGAAC-AAGAGAGAAACAATT-TACACATAAATAAGTTTTTAATTCAAAGACCAAAAGTT
* * * * *
8629 GTTTACAAAATGACTAACTATTTAGACCAAGTGATGCAATTTCTGGAGCATGGAATGTTTGGAAA
380 GTTTACAAAATGACAAACTATTTAGACCAAATGATGTAATTTCTCGAGCATGGAATGTTCGGAAA
* **
8694 ATTGCTCGAA-AAAGTGGATCGTCTTGAATACTTTAAGG-TGTCGAAGTTA-AAATAGAAATAGT
445 ATTGCTCGAAGGAA-TGGATCGTCTTGAATACTTTAAGGAACT-GAAGTTATAAA-AGAAATAGT
** * * **
8756 AAAAGTTTTTCTAGTT-TGAAAGTTCGTCACAA-AACCAAGAGAGAAACAATT-TCCACATAAAT
507 AAAAGTTTGACAAGTTCAG-AAGTTTATC-CAAGAA-CAAGAGAGAAACAATTCT-CACATAAAT
* * * * * * **
8818 AAGTATTTAACTCAATGACCAAAAGGTTTTTTTACAAAATGATAAACTATTTTGACTGAATGATG
568 AAGTTTTTAATTCAAAGACCAAAA-G-TTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
*
8883 CGATTTC-CCAATC
631 CGATTTCTCGAA-C
* * * * *
8896 ACGGAATTTTCGAAATATTGCTCGAAGGATTGGATCCTCTTGAATACTTTAAGGAACCGAAGTTA
1 ATGGAATGTTCGAAAAATTGCTCGAAGCAATGGAT-CTCTTGAATACTTTAAGGAACCGAAGTTA
* * * * * *****
8961 TTATA-AAA-GA-AATAGTTTGGA-AA-----AAA-TTC-T-CACGTAAAT-A-AG-TTTTTAAT
65 TAAAAGAAATGATAAAAGTTT-GACAAGTTCGAAAGTTCATCCAAG-AACTAAGAGAGAAACAAT
* * * * * * * **
9011 T-TGAAGATCAA-AACTTGGTT--TTCAAAATGA-C-AAACTATCTAGACCAAAA-GATGC-AA-
128 TCTCACG-TAAATAAGTT-TTTAATTC-AAA-GACCAAAAGT-TGTTTA-CAAAATGA--CAAAC
* * * * *
9067 T-TTCTCGA--GCATG--G-AATGTT-T-G-G-A--AAATTGCT-CG--T-A------G--A-AA
185 TATT-TAGACCGAATGATGCAAT-TTCTCGAGCATGGAA-TGTTAGGAATAATTGCTCGAAAGAA
* * * * * * *
9107 TGGATGGTCTTGAATTCTTTCAGGAACCGAAGTTATAAAATAACTCA-TAAAAGTTTTACTAGTT
247 TGGATCGTCTTGAATACTTT-AAGAAACGAAGTTATAAAAGAAAT-AGTAAAAGCTTTACTAG-T
** *
9171 TGGTAGTTCGTCCAAGAAGCAAGAGAGAAGCAATTTTA-ACATAAATAAGTTTTTAATTCAAAGA
309 T-AAAGTTCGTCCAAGAA-CAAGAGAGAAACAA-TTTACACATAAATAAGTTTTTAATTCAAAGA
* * * * * * **
9235 CCAAAAATTGTTTATAGAATGATAAACTATTTAAACCAAAAGAT-TCAATTTC-CAGATAATGGA
371 CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGT-AATTTCTC-GAGCATGGA
* * * * * *
9298 ATGTTC-GAAAATTGCTCG-ATGAAGTGGATCAT-TTATAATACTCTAAGGAACCGAAGTTGTAA
434 ATGTTCGGAAAATTGCTCGAAGGAA-TGGATCGTCTT-GAATACTTTAAGGAACTGAAGTTATAA
* * ** *
9360 AAGAACTTGTAAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAACTAAGAGAGAAACAATTCTCA
497 AAGAAATAGTAAAAGTTTGACAAGTTCAGAAGTTTATCCAAGAAC-AAGAGAGAAACAATTCTCA
* * * * * *
9425 CGTAAATAAGTTTTCAATTCAAAGACCAAAATTTGTTTACAAAATGAAAAAATATTTAGACCGAA
561 CATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * *
9490 TGTTGCAATTTCTCGAGC
626 TGATGCGATTTCTCGAAC
* * * *
9508 ATGGAATGTTTGGAATATTGCTCGAAACAATGGATCGTCTTGAATACTTTAAGGAACC-AATGTT
1 ATGGAATGTTCGAAAAATTGCTCGAAGCAATGGATC-TCTTGAATACTTTAAGGAACCGAA-GTT
* * * * * * *
9572 ATAAAAGAACTCG-TAAAAGCTTGAAAAGTTC-AGAAGTTCGTCTAAGAACCAAGAGAGAAATAA
64 ATAAAAGAAAT-GATAAAAGTTTGACAAGTTCGA-AAGTTCATCCAAGAACTAAGAGAGAAACAA
* * * *
9635 TTCTCAGGTAAATAAGTTTTTAATTGAAAGACCAAAATTTGTTTACAAAATGACTAACTATTTAG
127 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAG
*
9700 ACC-AAGTGATGCAATTTCTCGAGCATGGAATGTTTGGAA-AATTGCTCGAAA-AATTGGATCGT
192 ACCGAA-TGATGCAATTTCTCGAGCATGGAATGTTAGGAATAATTGCTCGAAAGAA-TGGATCGT
** * * *
9762 CTTGAATACTTTAAGGAGCCGAAGTTATAATAGAAATAGTAAAAGTTTTCCTAGTTCGAAAGTTC
255 CTTGAATACTTTAA-GAAACGAAGTTATAAAAGAAATAGTAAAAGCTTTACTAGTT--AAAGTTC
* * * * * *
9827 ATCCAAGAACCA-AGAGAAGCAATTTACACATAATTAAGTATTTAATTCAATGACCAAAAGTTGT
317 GTCCAAGAACAAGAGAGAAACAATTTACACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * *
9891 TTACAAAATGACAAACTATTTTGA-CAGAATGATGTGATTTCTCGAGCATGGAATGTTCGGAATA
382 TTACAAAATGACAAACTATTTAGACCA-AATGATGTAATTTCTCGAGCATGGAATGTTCGGAAAA
* * *
9955 TTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAAAAATAGTAAAG
446 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAAATAGTAAAA
* * * * * * *
10020 GCTTGACAAGTTCAGAAGTTTGTCTAAGAATCAAGGGAGAAATAA-TCTCACATAAATATGATTT
511 GTTTGACAAGTTCAGAAGTTTATCCAAGAA-CAAGAGAGAAACAATTCTCACATAAATAAGTTTT
** * *
10084 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGATAAAATGATGTGATTTTTC
575 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
10149 GAAC
640 GAAC
* * * * * * * *
10153 ATGCAATGTTCGAAAAATTTCTAGAAGGAGTGGATCACATAGAATACTTTAAGGAACCTAAGTTA
1 ATGGAATGTTCGAAAAATTGCTCGAAGCAATGGATCTC-TTGAATACTTTAAGGAACCGAAGTTA
* * *
10218 TAAAAGAACTGATAAACGTTTGACTAGTTCGAAAGTTCATCCAAGAACTAAGAGAGAAACAATTC
65 TAAAAGAAATGATAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACTAAGAGAGAAACAATTC
* * * * *
10283 CCACGTCATTAAGTTTTTAATTCAAAGGCCAAAAGTTGTTTACAAAATGACAAAATATTTAGACC
130 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
* *
10348 GAATGATGCAATTTCCCGAGCATGGAATGTTAGGAATAA-TGCTCGAAAGAATGGATCATCTTGA
195 GAATGATGCAATTTCTCGAGCATGGAATGTTAGGAATAATTGCTCGAAAGAATGGATCGTCTTGA
* * * * * ** * *
10412 ATACTTTAATAAATGAAAGTTATAAAAGAACTCGTAAAAGCTTGAAAAGTTTAGAAGTTTGTCTA
260 ATACTTTAAGAAACG-AAGTTATAAAAGAAATAGTAAAAGCTTTACTAG-TTA-AAGTTCGTCCA
* * *
10477 AGAATTAAGAGAGAAACAA-TT-CACGTAAATAAGTTTTTAATTGAAAGACCAAAAGTTGTTTAC
322 AGAA-CAAGAGAGAAACAATTTACACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* * * * *
10540 AAAATGACTAACTATTTAGACCAAGTGACGTAATTTCTCGAGCATGGAATGTTTGGGAAATTGCT
386 AAAATGACAAACTATTTAGACCAAATGATGTAATTTCTCGAGCATGGAATGTTCGGAAAATTGCT
* * * *
10605 CGAAGAAATGGATCGTCTTGAATACTTTAAGGAGCAGAAGTTAT---AGAAATAGTAAAAGTTTT
451 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAAATAGTAAAAGTTTG
* * * * * *
10667 CCTAGTT-TGAAAGTTCT-TCACAA-AACCAAGAGAGAAACAATT-TACAGATAAATAGGTATTT
516 ACAAGTTCAG-AAGTT-TATC-CAAGAA-CAAGAGAGAAACAATTCT-CACATAAATAAGTTTTT
* * * *
10728 AATTAAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTTGACCGAATGATGCGATTTC-CC
576 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCG
*
10792 AAGT
641 AA-C
* * * *
10796 ATGGAATGTTCGAAATATTGCTCGAAGGAATTGATCATCTTGAGTACTTTAAGGAACCGAAGTTA
1 ATGGAATGTTCGAAAAATTGCTCGAAGCAATGGATC-TCTTGAATACTTTAAGGAACCGAAGTTA
* ** * *
10861 TAAAAGAAATAGCA-AAAA-CTTGACAAGTTC-AGAAGTTTTTCTAAGAA-TCAAGAGAGAAATA
65 TAAAAGAAAT-G-ATAAAAGTTTGACAAGTTCGA-AAGTTCATCCAAGAACT-AAGAGAGAAACA
* *
10922 A-TCTCACGTAAAT-ATTATTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTT
126 ATTCTCACGTAAATAAGT-TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* *** * * *
10985 AGACTGAATGATATGATTTC-CGAGCATGGAATGTTCGAAAT-ATTGCTCGAAGGAATGGATCGT
190 AGACCGAATGATGCAATTTCTCGAGCATGGAATGTTAGGAATAATTGCTCGAAAGAATGGATCGT
* * * * * *
11048 CTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGCTTGACTAATTCAGAAGTTC
255 CTTGAATACTTTAAGAAAC-GAAGTTATAAAAGAAATAGTAAAAGCTTTACTAGTT-A-AAGTTC
* * * *
11113 GTCTAAGAACCAA-AGGAGAAACAATTCT-CAC-TAAAATAAG--TTT--TT--AGGACAAAAAC
317 GTCCAAGAA-CAAGA-GAGAAACAATT-TACACAT-AAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * * * *
11169 TTTTTTTCAAAATGGCAAACTATTTAGACCAAATGATGCAACTTATCGAGCATGGAGTGTTTGGA
378 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTAATTTCTCGAGCATGGAATGTTCGGA
* * * * * *
11234 AAATTTCTCAAAGAAATGGATGGTCTTGAATACTTTAAGG-ACTGAAGTTATAAAAGAAGTCGTA
443 AAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAAATAGTA
* **** ** * * * * * *
11298 AAATTTTTTTGAGTTTGGAAGGTTATCCAGGAACGACGAGAGAAACAATTTTGACATAAGTAAGT
508 AAAGTTTGACAAGTTCAGAAGTTTATCCAAGAAC-AAGAGAGAAACAATTCTCACATAAATAAGT
* * * * * *
11363 TTTTAATTTAAAGGCCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAAAGGTTCGATTT
572 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
*
11428 CCCGAGA-
637 CTCGA-AC
* * *
11435 ATGGAATGTTTGAAAAATTGCTC-AATGAAATGGATTGTCTAT-AATACTTTAAGGAACCGAAGT
1 ATGGAATGTTCGAAAAATTGCTCGAA-GCAATGGA-TCTCT-TGAATACTTTAAGGAACCGAAGT
* * * * * * *
11498 TCTAAAAGAATTTG-TAAAAGTTTAACAAGTTCGAAGGTTCGTCCAAGAACTATGAGAAAAACAA
63 TATAAAAGAA-ATGATAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACTAAGAGAGAAACAA
* * **
11562 TTCCCACGTCAATAAGTTTTTAATTCAAAGATTAAAAAGTTG-TT---AAATGACAAACTATTTA
127 TTCTCACGTAAATAAGTTTTTAATTCAAAGA-CCAAAAGTTGTTTACAAAATGACAAACTATTTA
* * ** * * * * * * * * * *
11623 GATCAAATGATGTGATTTTTTGAACATTGAAGGTT-CGAAAAATTTCTAGAAGGAATGGATCG-C
191 GACCGAATGATGCAATTTCTCGAGCATGGAATGTTAGGAATAATTGCTCGAAAGAATGGATCGTC
* * * *
11686 ATAGAATACTTTAAGGAACCTAAGTTAT-----AAA-A-T--AA-C-TT-CTA---AACA-TTCA
256 -TTGAATACTTTAA-GAAACGAAGTTATAAAAGAAATAGTAAAAGCTTTACTAGTTAA-AGTTCG
* **
11735 TCCAAGAACTAAGAGAGAAATAATTCT-CACGCAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
318 TCCAAGAAC-AAGAGAGAAACAATT-TACACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * ** * * * *
11799 TTTACAAAATGACAAAATATTTAGACCGAATGATGCGATTTCTCAAGCATGGAAAGTTTGGAATA
381 TTTACAAAATGACAAACTATTTAGACCAAATGATGTAATTTCTCGAGCATGGAATGTTCGGAAAA
* * * * *
11864 TTGCTCGAAAGAATCGATCGTCTTGAATACTTTAAGGAACTAAAGTTATAAAAGAACTCGTAAAA
446 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAAATAGTAAAA
* ** * * * **
11929 GTTTGAAAAGTTCAGAAGTTCGTCTAAAAACCAAGAGAGACACAATTCTCATGTAAATAAGTTTT
511 GTTTGACAAGTTCAGAAGTTTATCCAAGAA-CAAGAGAGAAACAATTCTCACATAAATAAGTTTT
* * *
11994 TAATTCAAAAACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAGTGATGCAATTTCTC
575 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
*
12059 GAGC
640 GAAC
*
12063 ATGGAATGTTCGAAAAATTGCTCGAAGCAATGGATTGTCTTGAATACTTTAAGGAACCGAAGTTA
1 ATGGAATGTTCGAAAAATTGCTCGAAGCAATGGA-TCTCTTGAATACTTTAAGGAACCGAAGTTA
** * * * *
12128 TAACAA-AAAT-AGTAAAAGTTTTCCTAGTTTGAAAGTTCATCCAAGAACCAAGAGTGAAACAAT
65 TAA-AAGAAATGA-TAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACTAAGAGAGAAACAAT
* * * * **
12191 T-TACACATAAATAAGTATTTAATTCAAAGACTAAAAGTTGTTTACAAAATGAAAAACTATTTTC
128 TCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAG
* ** * *
12255 ACCGAATGATGCATTTTCTCGAGTGTGGAATGTTCA-GAAT-ATTGCTCGAAGGAATGGATCATC
192 ACCGAATGATGCAATTTCTCGAGCATGGAATGTT-AGGAATAATTGCTCGAAAGAATGGATCGTC
** * * *
12318 TTGAATACTTTAACGAATTGAAGTTATAAAAGAAATAGTAAAAGCTTGACAAGTTCAAATGTTTG
256 TTGAATACTTTAA-GAAACGAAGTTATAAAAGAAATAGTAAAAGCTTTACTAGTT-AAA-GTTCG
* * *
12383 TCTAAGAATCAAGAGAGAAATAATTGT-CACATAAATATGTTTTTAATTCAAAGACCAAAAGTTG
318 TCCAAGAA-CAAGAGAGAAACAATT-TACACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
12447 T
381 T
12448 GATTTCCCAA
Statistics
Matches: 5514, Mismatches: 958, Indels: 707
0.77 0.13 0.10
Matches are distributed among these distances:
611 3 0.00
612 95 0.02
613 11 0.00
614 114 0.02
615 160 0.03
616 10 0.00
618 1 0.00
619 1 0.00
620 3 0.00
621 38 0.01
622 6 0.00
623 6 0.00
624 4 0.00
625 21 0.00
626 25 0.00
627 118 0.02
628 259 0.05
629 7 0.00
630 4 0.00
631 85 0.02
632 8 0.00
633 3 0.00
634 4 0.00
635 12 0.00
636 34 0.01
637 153 0.03
638 64 0.01
639 207 0.04
640 44 0.01
641 130 0.02
642 118 0.02
643 189 0.03
644 157 0.03
645 555 0.10
646 202 0.04
647 843 0.15
648 107 0.02
649 168 0.03
650 242 0.04
651 67 0.01
652 161 0.03
653 270 0.05
654 261 0.05
655 6 0.00
656 1 0.00
658 1 0.00
664 2 0.00
672 1 0.00
673 8 0.00
674 176 0.03
675 168 0.03
676 4 0.00
677 94 0.02
678 74 0.01
679 9 0.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.29
Consensus pattern (643 bp):
ATGGAATGTTCGAAAAATTGCTCGAAGCAATGGATCTCTTGAATACTTTAAGGAACCGAAGTTAT
AAAAGAAATGATAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACTAAGAGAGAAACAATTCT
CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCG
AATGATGCAATTTCTCGAGCATGGAATGTTAGGAATAATTGCTCGAAAGAATGGATCGTCTTGAA
TACTTTAAGAAACGAAGTTATAAAAGAAATAGTAAAAGCTTTACTAGTTAAAGTTCGTCCAAGAA
CAAGAGAGAAACAATTTACACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
GACAAACTATTTAGACCAAATGATGTAATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
GAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAAATAGTAAAAGTTTGACAAG
TTCAGAAGTTTATCCAAGAACAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGA
CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAAC
Found at i:13641 original size:80 final size:79
Alignment explanation
Indices: 13502--13666 Score: 269
Period size: 80 Copynumber: 2.1 Consensus size: 79
13492 TACAAACACT
* * *
13502 AATTTCTTTTTAACTCTTGTAGGGAAGCTAATGAGTCATGTCTCTTTAATAGGATCTGATGTAGT
1 AATTTCTTTTTAACTCTTGTAGGAAAGCCAATGAGTCATGTCTCTTCAATAGGATCTGATGTAGT
13567 TAAAAAGGCATGGC
66 TAAAAAGGCATGGC
*
13581 AATTTCGTTTTTAACTCTTGTAGGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAG
1 AATTTC-TTTTTAACTCTTGTAGGAAAGCCAATGAGTCATGTCTCTTCAATAGGATCTGATGTAG
*
13646 TTGAAAAGGCATGGC
65 TTAAAAAGGCATGGC
13661 -ATTTCT
1 AATTTCT
13667 CCTTAATGAA
Statistics
Matches: 80, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
78 1 0.01
79 11 0.14
80 68 0.85
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (79 bp):
AATTTCTTTTTAACTCTTGTAGGAAAGCCAATGAGTCATGTCTCTTCAATAGGATCTGATGTAGT
TAAAAAGGCATGGC
Found at i:14183 original size:49 final size:48
Alignment explanation
Indices: 14108--14336 Score: 307
Period size: 48 Copynumber: 4.8 Consensus size: 48
14098 GCAAGGCATT
* *
14108 TAAA-AAAGTTGCATTTAACAAACAAAACAGTTAATAATGCAGATTAC
1 TAAACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGATTAC
* *
14155 TAAACAAATATGCATTTTAACAAACAAAACAATTAATAATGCAGATTAC
1 TAAACAAAGATGCA-TTTAACAAACAAAACACTTAATAATGCAGATTAC
* * *
14204 TAAATAAAGATGCATTTAACAAACAAAACAGTTAATAATGCAGATAAC
1 TAAACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGATTAC
* * * * *
14252 TAAACAAGGATGCATTTATCAAACAAAACACTAAATGATGCAGATTAT
1 TAAACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGATTAC
* *
14300 TAAACAAATATGCATTTAACAAAAAAAAACACTTAAT
1 TAAACAAAGATGCATTTAAC-AAACAAAACACTTAAT
14337 GAAGCATAAA
Statistics
Matches: 159, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
47 4 0.03
48 96 0.60
49 59 0.37
ACGTcount: A:0.53, C:0.14, G:0.09, T:0.25
Consensus pattern (48 bp):
TAAACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGATTAC
Found at i:14221 original size:97 final size:95
Alignment explanation
Indices: 14108--14336 Score: 314
Period size: 97 Copynumber: 2.4 Consensus size: 95
14098 GCAAGGCATT
* * *
14108 TAAAAAAGTTGCATTTAACAAACAAAACAGTTAATAATGCAGATTACTAAACAAATATGCATTTT
1 TAAAAAAGATGCATTTAACAAACAAAACAGTTAATAATGCAGATAACTAAACAAAGATGCA-TTT
*
14173 AACAAACAAAACAATTAATAATGCAGATTAC
65 AACAAACAAAACAATAAATAATGCAGATTAC
*
14204 TAAATAAAGATGCATTTAACAAACAAAACAGTTAATAATGCAGATAACTAAACAAGGATGCATTT
1 TAAA-AAAGATGCATTTAACAAACAAAACAGTTAATAATGCAGATAACTAAACAAAGATGCATTT
* * * *
14269 ATCAAACAAAACACTAAATGATGCAGATTAT
65 AACAAACAAAACAATAAATAATGCAGATTAC
* * *
14300 TAAACAAATATGCATTTAACAAAAAAAAACACTTAAT
1 TAAA-AAAGATGCATTTAAC-AAACAAAACAGTTAAT
14337 GAAGCATAAA
Statistics
Matches: 118, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
96 51 0.43
97 67 0.57
ACGTcount: A:0.53, C:0.14, G:0.09, T:0.25
Consensus pattern (95 bp):
TAAAAAAGATGCATTTAACAAACAAAACAGTTAATAATGCAGATAACTAAACAAAGATGCATTTA
ACAAACAAAACAATAAATAATGCAGATTAC
Found at i:15179 original size:48 final size:48
Alignment explanation
Indices: 15107--15219 Score: 163
Period size: 48 Copynumber: 2.4 Consensus size: 48
15097 TTAATGCAAG
* * *
15107 GCATTTAACAAACAAAATAGTTAATAATGCAGATTACTAAACAAAGAT
1 GCATTTAACAAACAAAACACTTAATAATGCAAATTACTAAACAAAGAT
* * *
15155 GCATTTAACAAACAATACACTTAATGATGCAAATTATTAAACAAAGAT
1 GCATTTAACAAACAAAACACTTAATAATGCAAATTACTAAACAAAGAT
*
15203 GCATTTAACAAAGAAAA
1 GCATTTAACAAACAAAA
15220 AACACTCAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 57 1.00
ACGTcount: A:0.52, C:0.13, G:0.10, T:0.25
Consensus pattern (48 bp):
GCATTTAACAAACAAAACACTTAATAATGCAAATTACTAAACAAAGAT
Found at i:22076 original size:12 final size:12
Alignment explanation
Indices: 22059--22086 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
22049 CAGTAATAAC
22059 ATCTAACTCAAG
1 ATCTAACTCAAG
22071 ATCTAACTCAAG
1 ATCTAACTCAAG
22083 ATCT
1 ATCT
22087 CTAGGGCAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.29
Consensus pattern (12 bp):
ATCTAACTCAAG
Found at i:25086 original size:216 final size:215
Alignment explanation
Indices: 24678--26021 Score: 1527
Period size: 216 Copynumber: 6.2 Consensus size: 215
24668 GATCATCTTC
* * * * *
24678 AATAGTTTAGGGAACC-AACGTTATAAAAGAACTCTTAAAAGTTTGACAAGTTCGGAAGCTCGTC
1 AATACTTTAAGGAACCGAA-GTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTC
* * * ** *
24742 CAAGAACAAAGAGAGAAATAATTCTCACGTAAATAA-TTTTCAATTCAAAGAAAAAAAGTTTTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * ** * *
24806 ACAAAATGATAAAGTATTTAGGTCAAATAATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTG
*
24871 CTCGAAGTAATGGATCGCATTG
195 CTCGAAGGAATGGATCGC-TTG
* * *
24893 AACACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCC
* * * *
24958 AATAACAAAGAGAAAAACAATTCTCAC-TAAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTT
66 AAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
25022 ACAAAATGATAAACTATTTAGACCGAATGATGCGATTTCCTGAGCATGGAATGTTTGAAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTG
*
25087 CTCGAAGGAATGGATCATCTTG
195 CTCGAAGGAATGGATC-GCTTG
* * * * * * ** *
25109 AATACTTTAAGGAACTGAAATTATAAAAAAACCTCATCAAAGTTTGACGAGTTAGGCAGTTCTTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAA-CTCATAAAAGTTTGACAAGTTCGAAAGTTCGTC
* * * * *
25174 CAGGAACCAAGAGACAAACAATTCTCACATAAATAAGTTTTTCATTCGAAGACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
25239 ACAAAATGTA-AAACTATTTAGACCAAACGGAT-CGATTTCCCGAGCAGGGAATGTTTGGAAAAT
130 ACAAAATG-ACAAACTATTTAGACCAAA-TGATGCGATTTCCCGAGCATGGAATGTTCGAAAAAT
* * *
25302 TGCTCGAAGGAACGGTTCATCTTG
193 TGCTCGAAGGAATGGATC-GCTTG
* * * * *
25326 AATCCTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTTGTCA
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCC
* * *
25391 AAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTTTTTAATTCAAACACCAAATGTTGTTTA
66 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * ** * * * * **
25456 CAAAATGACAAACTAGTTAAACTGAATGATGCAATTTCCTGAGCATGGAATGTTTGGAATTTTGC
131 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
25521 TCGAAGGAATGGATCGTCTTG
196 TCGAAGGAATGGATCG-CTTG
* * * *
25542 AATACTTTAAGGAAGCAAAGTTATAAAAGAACTCATAAAAGCTTAACAAGTTC-AGAAGTTCGTC
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGA-AAGTTCGTC
* * * * * *
25606 TAAGAACCAGGAGAGAAACAGTTCTCA-GTTAAATAAGTTTTTAATTTAAATA-AAAAAGTTGTT
65 CAAGAACCAAGAGAGAAACAATTCTCACG-TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* ** * *
25669 TACAAAATAACAAACTATTTAGACCAAATTTTGCAATTTCCCGAGCATGAAATGTTCGAAAAATT
129 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT
* *
25734 GTTCGATGGAATGGATCGTCTTG
194 GCTCGAAGGAATGGATCG-CTTG
* * ** * * **
25757 AATAATTTAAGGAACCGAAGTTATAAAA-AGACTCGTAAACCTTTGACAAGTTTGGAAGTTAATC
1 AATACTTTAAGGAACCGAAGTTATAAAAGA-ACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTC
* * *
25821 CAAGAACCAAGAGAGAAACAATGCCCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTT
65 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
25886 ACAAAATGACAAAGTATTTAGACCAAATGATGCGATTTCCCGTGTATGGAATGTTCAAAAAATTG
130 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTG
* **
25951 CTTGAAGGAATGGATCATTTTG
195 CTCGAAGGAATGGATC-GCTTG
* * * *
25973 AATACTTTTAGGAATCGAGGTTATAAAAGAACTCATAAAAGTTTAACAA
1 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAA
26022 TATTTTGTGC
Statistics
Matches: 954, Mismatches: 156, Indels: 37
0.83 0.14 0.03
Matches are distributed among these distances:
214 2 0.00
215 266 0.28
216 497 0.52
217 184 0.19
218 5 0.01
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (215 bp):
AATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCC
AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
TCGAAGGAATGGATCGCTTG
Found at i:25837 original size:431 final size:428
Alignment explanation
Indices: 24668--26021 Score: 1642
Period size: 431 Copynumber: 3.1 Consensus size: 428
24658 AAATGCTAAT
* * * * * * *
24668 GATCATCTTCAATAGTTTAGGGAACCAACGTTATAAAAGAACTCTTAAAAGTTTGACAAGTTCGG
1 GATCATCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCATAAAAGTTTAACAAGTTCAG
* * * *
24733 AAGCTCGTCCAAGAACAAAGAGAGAAATAATTCTCACGTAAATAA-TTTTCAATTCAAAGAAAAA
65 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA-GTAAATAAGTTTTTAATTCAAA-AAAAA
* * * **
24797 AAGTTTTTTACAAAATGATAAAGTATTTAGGTCAAATAATGCGATTTCCCGAGCATGGAATGTTC
128 AAGTTGTTTACAAAAT-AAAAACTATTTAGACCAAATAATGCGATTTCCCGAGCATGGAATGTTC
* * *
24862 GGAAAATTGCTCGAAGTAATGGATCG-CATTGAACACTTTAAGGAATCGAAGTTATAAAAGAACT
192 GGAAAATTGCTCGAAGGAATGGATCGTC-TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * * *
24926 CGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAATAACAAAGAGAAAAACAATTCTCAC-TAAAA
256 CGTAAAAGTTTGACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAA
*
24990 TAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGATAAACTATTTAGACCGAATGATGC
320 TAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGC
25055 GATTTCCTGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATG
385 GATTTCCTGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATG
* * * *
25099 GATCATCTTGAATACTTTAAGGAACTGAAA-TTATAAAAAAACCTCATCAAAGTTTGACGAGTT-
1 GATCATCTTGAATACTTTAAGGAAC--AAAGTTATAAAAGAA-CTCATAAAAGTTTAACAAGTTC
* * * * * * * *
25162 AGGCAGTTCTTCCAGGAACCAAGAGACAAACAATTCTCACATAAATAAGTTTTTCATTCGAAGAC
63 A-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA-GTAAATAAGTTTTTAATTC-AAAAA
* * ** *
25227 CAAAAGTTGTTTACAAAATGTAAAACTATTTAGACCAAACGGAT-CGATTTCCCGAGCAGGGAAT
125 AAAAAGTTGTTTACAAAAT-AAAAACTATTTAGACCAAA-TAATGCGATTTCCCGAGCATGGAAT
* * * * * *
25291 GTTTGGAAAATTGCTCGAAGGAACGGTTCATCTTGAATCCTTTAAGGAACCAAAGTTATAAAAGA
188 GTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
* * *
25356 ACTCGTAAAAGTTTGACAAGTTCGAAAGTTTGTCAAAGAACCAAGAGAGAAACAATTCTAACGTA
253 ACTCGTAAAAGTTTGACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* * * * * *
25421 AATAAGTTTTTAATTCAAACACCAAATGTTGTTTACAAAATGACAAACTAGTTAAACTGAATGAT
318 AATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGAT
* * **
25486 GCAATTTCCTGAGCATGGAATGTTTGGAATTTTGCTCGAAGGAATG
383 GCGATTTCCTGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATG
* *
25532 GATCGTCTTGAATACTTTAAGGAAGCAAAGTTATAAAAGAACTCATAAAAGCTTAACAAGTTCAG
1 GATCATCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCATAAAAGTTTAACAAGTTCAG
* * * * *
25597 AAGTTCGTCTAAGAACCAGGAGAGAAACAGTTCTCAGTTAAATAAGTTTTTAATTTAAATAAAAA
65 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAG-TAAATAAGTTTTTAATTCAAAAAAAAA
** * *
25662 AGTTGTTTACAAAATAACAAACTATTTAGACCAAATTTTGCAATTTCCCGAGCATGAAATGTTCG
129 AGTTGTTTACAAAATAA-AAACTATTTAGACCAAATAATGCGATTTCCCGAGCATGGAATGTTCG
* * * *
25727 AAAAATTGTTCGATGGAATGGATCGTCTTGAATAATTTAAGGAACCGAAGTTATAAAA-AGACTC
193 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA-ACTC
** * * * * *
25791 GTAAACCTTTGACAAGTTTGGAAGTTAATCCAAGAACCAAGAGAGAAACAATGCCCACGTAAATA
257 GTAAAAGTTTGACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
25856 AGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAAGTATTTAGACCAAATGATGCGA
322 AGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGA
* * * ** *
25921 TTTCCCGTGTATGGAATGTTCAAAAAATTGCTTGAAGGAATG
387 TTTCCTGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATG
* * * *
25963 GATCATTTTGAATACTTTTAGGAATCGAGGTTATAAAAGAACTCATAAAAGTTTAACAA
1 GATCATCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCATAAAAGTTTAACAA
26022 TATTTTGTGC
Statistics
Matches: 778, Mismatches: 129, Indels: 32
0.83 0.14 0.03
Matches are distributed among these distances:
430 4 0.01
431 338 0.43
432 124 0.16
433 305 0.39
434 7 0.01
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (428 bp):
GATCATCTTGAATACTTTAAGGAACAAAGTTATAAAAGAACTCATAAAAGTTTAACAAGTTCAGA
AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAGTAAATAAGTTTTTAATTCAAAAAAAAAAG
TTGTTTACAAAATAAAAACTATTTAGACCAAATAATGCGATTTCCCGAGCATGGAATGTTCGGAA
AATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAA
AAGTTTGACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
TTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTC
CTGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATG
Found at i:29572 original size:10 final size:8
Alignment explanation
Indices: 29550--29574 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
29540 GGAAAGGGAT
29550 TGAGAGAA
1 TGAGAGAA
29558 TGAGAGAA
1 TGAGAGAA
29566 TGAGAGAA
1 TGAGAGAA
29574 T
1 T
29575 AAAGAATGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.36, T:0.16
Consensus pattern (8 bp):
TGAGAGAA
Found at i:41797 original size:66 final size:66
Alignment explanation
Indices: 41691--41834 Score: 288
Period size: 66 Copynumber: 2.2 Consensus size: 66
41681 GTAGAATCTA
41691 AAGAGGAACCAAATAGTCCTAAACCGATTAAGGAACCTACAAACCCAGAACCAAAAGTTGAGCCA
1 AAGAGGAACCAAATAGTCCTAAACCGATTAAGGAACCTACAAACCCAGAACCAAAAGTTGAGCCA
41756 G
66 G
41757 AAGAGGAACCAAATAGTCCTAAACCGATTAAGGAACCTACAAACCCAGAACCAAAAGTTGAGCCA
1 AAGAGGAACCAAATAGTCCTAAACCGATTAAGGAACCTACAAACCCAGAACCAAAAGTTGAGCCA
41822 G
66 G
41823 AAGAGGAACCAA
1 AAGAGGAACCAA
41835 TCGAGCCAAG
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 78 1.00
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.11
Consensus pattern (66 bp):
AAGAGGAACCAAATAGTCCTAAACCGATTAAGGAACCTACAAACCCAGAACCAAAAGTTGAGCCA
G
Found at i:45405 original size:22 final size:22
Alignment explanation
Indices: 45363--45407 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
45353 CAATAATGGT
* *
45363 GGAGTGGTGGTCCGGCGGTGGA
1 GGAGTGGTGGTCCGACAGTGGA
*
45385 GGAGTGGTGGTCCGATAGTGGA
1 GGAGTGGTGGTCCGACAGTGGA
45407 G
1 G
45408 TGCTATAGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.13, C:0.11, G:0.56, T:0.20
Consensus pattern (22 bp):
GGAGTGGTGGTCCGACAGTGGA
Found at i:46597 original size:19 final size:19
Alignment explanation
Indices: 46573--46707 Score: 59
Period size: 19 Copynumber: 7.3 Consensus size: 19
46563 TTAGAATTAT
46573 TTTTTTGAAATTTTTATAA
1 TTTTTTGAAATTTTTATAA
**
46592 TTTTTT-AAA--AATATAA
1 TTTTTTGAAATTTTTATAA
**
46608 AATTTT-AAATTTTTATAAA
1 TTTTTTGAAATTTTTAT-AA
* * *
46627 TATTTTG-AATTTTAAAAA
1 TTTTTTGAAATTTTTATAA
* * *
46645 TTATTTTGAAAATTTAAAAA
1 TT-TTTTGAAATTTTTATAA
* *
46665 TATTTTG-AATTATTTAAAA
1 TTTTTTGAAATT-TTTATAA
* *
46684 TTATTTTG-ATTTTTTTTAA
1 TT-TTTTGAAATTTTTATAA
46703 TTTTT
1 TTTTT
46708 GTTGAGAGAG
Statistics
Matches: 90, Mismatches: 18, Indels: 17
0.72 0.14 0.14
Matches are distributed among these distances:
16 12 0.13
18 15 0.17
19 44 0.49
20 19 0.21
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (19 bp):
TTTTTTGAAATTTTTATAA
Found at i:46624 original size:18 final size:19
Alignment explanation
Indices: 46603--46690 Score: 67
Period size: 19 Copynumber: 4.6 Consensus size: 19
46593 TTTTTAAAAA
46603 TATAAA-ATTTTAAATTTT
1 TATAAATATTTTAAATTTT
*
46621 TATAAATATTTTGAA-TTT
1 TATAAATATTTTAAATTTT
* *
46639 TAAAAATTATTTTGAAA-ATT
1 TATAAA-TATTTT-AAATTTT
* *
46659 TAAAAATATTTTGAATTATT
1 TATAAATATTTTAAATT-TT
46679 TA-AAATTATTTT
1 TATAAA-TATTTT
46691 GATTTTTTTT
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
18 16 0.28
19 22 0.38
20 20 0.34
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.52
Consensus pattern (19 bp):
TATAAATATTTTAAATTTT
Found at i:46662 original size:20 final size:20
Alignment explanation
Indices: 46627--46692 Score: 84
Period size: 20 Copynumber: 3.4 Consensus size: 20
46617 TTTTTATAAA
*
46627 TATTTTG-AATTTTAAAAAT
1 TATTTTGAAAATTTAAAAAT
46646 TATTTTGAAAATTTAAAAA-
1 TATTTTGAAAATTTAAAAAT
*
46665 TATTTTGAATTATTT-AAAAT
1 TATTTTGAA-AATTTAAAAAT
46685 TATTTTGA
1 TATTTTGA
46693 TTTTTTTTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
19 20 0.48
20 22 0.52
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (20 bp):
TATTTTGAAAATTTAAAAAT
Found at i:46666 original size:38 final size:39
Alignment explanation
Indices: 46619--46692 Score: 123
Period size: 38 Copynumber: 1.9 Consensus size: 39
46609 ATTTTAAATT
*
46619 TTTATAAATATTTTGAATT-TTAAAAATTATTTTGAAAA
1 TTTAAAAATATTTTGAATTATTAAAAATTATTTTGAAAA
*
46657 TTTAAAAATATTTTGAATTATTTAAAATTATTTTGA
1 TTTAAAAATATTTTGAATTATTAAAAATTATTTTGA
46693 TTTTTTTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
38 18 0.55
39 15 0.45
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (39 bp):
TTTAAAAATATTTTGAATTATTAAAAATTATTTTGAAAA
Found at i:47060 original size:21 final size:19
Alignment explanation
Indices: 47025--47089 Score: 64
Period size: 21 Copynumber: 3.3 Consensus size: 19
47015 TTATATTTTT
47025 TATTTTTAT-AATTTTGAA
1 TATTTTTATAAATTTTGAA
47043 TACTTTTTATGAAATTTTGAA
1 TA-TTTTTAT-AAATTTTGAA
47064 -ATTTATTATAAATATTTTGAA
1 TATTT-TTAT-AA-ATTTTGAA
47085 T-TTTT
1 TATTTT
47090 GGAAATTATT
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
18 2 0.05
19 10 0.25
20 8 0.20
21 20 0.50
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.58
Consensus pattern (19 bp):
TATTTTTATAAATTTTGAA
Found at i:54021 original size:24 final size:25
Alignment explanation
Indices: 53997--54044 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
53987 AAACAACTTC
53997 TAAAAAAAAACTC-AAGAGCAATTCT
1 TAAAAAAAAACTCAAAGAG-AATTCT
* *
54022 TGAAGAAAAACTCAAAGAGAATT
1 TAAAAAAAAACTCAAAGAGAATT
54045 ATTATTAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 15 0.75
26 5 0.25
ACGTcount: A:0.56, C:0.12, G:0.12, T:0.19
Consensus pattern (25 bp):
TAAAAAAAAACTCAAAGAGAATTCT
Found at i:60114 original size:16 final size:16
Alignment explanation
Indices: 60093--60123 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
60083 TTATAAAAAA
*
60093 TTTCTTTCTTTTTCTT
1 TTTCTTCCTTTTTCTT
60109 TTTCTTCCTTTTTCT
1 TTTCTTCCTTTTTCT
60124 CATTCTGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTCTTCCTTTTTCTT
Found at i:63092 original size:20 final size:21
Alignment explanation
Indices: 63067--63105 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
63057 GCAAGGAAAT
63067 TGAAAC-AACAAAAGTAAAAG
1 TGAAACAAACAAAAGTAAAAG
*
63087 TGAAACAAATAAAAGTAAA
1 TGAAACAAACAAAAGTAAA
63106 TAAAAAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.67, C:0.08, G:0.13, T:0.13
Consensus pattern (21 bp):
TGAAACAAACAAAAGTAAAAG
Found at i:69422 original size:13 final size:14
Alignment explanation
Indices: 69388--69426 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
69378 TATCTCTTTT
*
69388 TCTTCCTTTTCATC
1 TCTTTCTTTTCATC
*
69402 TTTTTCTTTTC-TC
1 TCTTTCTTTTCATC
69415 TCTTTCTTTTCA
1 TCTTTCTTTTCA
69427 CTTTTTTTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.05, C:0.28, G:0.00, T:0.67
Consensus pattern (14 bp):
TCTTTCTTTTCATC
Found at i:69453 original size:29 final size:31
Alignment explanation
Indices: 69406--69463 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
69396 TTCATCTTTT
*
69406 TCTTTTCTCTCTTTCTTTTCACTTT-TTTTGC
1 TCTTTTCTCTCTATCTTTTC-CTTTCTTTTGC
69437 TCTTTTCTCTC-AT-TTTTCCTTTCTTTT
1 TCTTTTCTCTCTATCTTTTCCTTTCTTTT
69464 TTTAAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 4 0.16
29 9 0.36
30 1 0.04
31 11 0.44
ACGTcount: A:0.03, C:0.26, G:0.02, T:0.69
Consensus pattern (31 bp):
TCTTTTCTCTCTATCTTTTCCTTTCTTTTGC
Found at i:76239 original size:12 final size:12
Alignment explanation
Indices: 76222--76265 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
76212 TGCTAGAAAT
76222 AAATAAAATAAA
1 AAATAAAATAAA
*
76234 AAATAAAATGAA
1 AAATAAAATAAA
76246 AAATAATAA-AAA
1 AAATAA-AATAAA
*
76258 TAATAAAA
1 AAATAAAA
76266 GGACTGCATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 2 0.07
12 24 0.86
13 2 0.07
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (12 bp):
AAATAAAATAAA
Found at i:76341 original size:4 final size:4
Alignment explanation
Indices: 76332--76384 Score: 54
Period size: 4 Copynumber: 12.8 Consensus size: 4
76322 CAAGTACTAG
* *
76332 AAAT AAAT AAAT AAAT AAA- AAGT AAAAT AAAA ATAAT AAAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT A-AAT -AAAT AAAT AAAT
76382 AAA
1 AAA
76385 ATTAAGGAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
3 2 0.05
4 30 0.73
5 8 0.20
6 1 0.02
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:76367 original size:18 final size:18
Alignment explanation
Indices: 76332--76380 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 18
76322 CAAGTACTAG
76332 AAATAAATAAATAAATAA-A
1 AAATAAAT-AA-AAATAATA
*
76351 AAGTAAAATAAAAATAATA
1 AAAT-AAATAAAAATAATA
76370 AAATAAATAAA
1 AAATAAATAAA
76381 TAAAATTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 13 0.50
19 9 0.35
20 4 0.15
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (18 bp):
AAATAAATAAAAATAATA
Found at i:77387 original size:16 final size:15
Alignment explanation
Indices: 77368--77397 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
77358 TTTTACATTT
77368 TTCTTTTTCTATTTTC
1 TTCTTTTTCT-TTTTC
77384 TTCTTTTTCTTTTT
1 TTCTTTTTCTTTTT
77398 GTTTGCAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (15 bp):
TTCTTTTTCTTTTTC
Found at i:79685 original size:24 final size:24
Alignment explanation
Indices: 79650--79705 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
79640 TGTATGGGTA
*
79650 TCTTCTTATTTTTCATTTTCATTT
1 TCTTCTTGTTTTTCATTTTCATTT
*
79674 TCTTCTTGTTTTTCATTTTCTTTT
1 TCTTCTTGTTTTTCATTTTCATTT
*
79698 TCATCTTG
1 TCTTCTTG
79706 AGAACTCTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.09, C:0.18, G:0.04, T:0.70
Consensus pattern (24 bp):
TCTTCTTGTTTTTCATTTTCATTT
Found at i:81130 original size:50 final size:50
Alignment explanation
Indices: 81076--81344 Score: 166
Period size: 50 Copynumber: 5.4 Consensus size: 50
81066 TTCAATCCAA
* * *
81076 TCCACTGCAACTTCAGGGATATAGGATTTGATGTCATAATTTTATTTTGC
1 TCCACTGCAACTTCAAGGATATAGGATTTGATGTCATAGTTTCATTTTGC
* * * * * * * * * * *
81126 TCCACTGTATCTCCAAGGAGATAAGATTTGCTTTCA-AGCTTCAATCTGA
1 TCCACTGCAACTTCAAGGATATAGGATTTGATGTCATAGTTTCATTTTGC
* * * * *
81175 TTCACTGCAATTTCATGGATATAGGATTTGATGTCGTAGTTTCATCTTGC
1 TCCACTGCAACTTCAAGGATATAGGATTTGATGTCATAGTTTCATTTTGC
* * * * * * * *
81225 TCCAATGCAACTTTAAGGATATAAAGATTTGCT-TCTATGGCTTCAGTTCGAC
1 TCCACTGCAACTTCAAGGATAT-AGGATTTGATGTC-ATAGTTTCATTTTG-C
* * * * ** * *
81277 T-CACTGCAACTTCATGGGTATAGGATTTGGTTTTGTAGCTTCATCTTGC
1 TCCACTGCAACTTCAAGGATATAGGATTTGATGTCATAGTTTCATTTTGC
*
81326 TCCACTGTAACTTCAAGGA
1 TCCACTGCAACTTCAAGGA
81345 GATAAAAGAT
Statistics
Matches: 155, Mismatches: 58, Indels: 12
0.69 0.26 0.05
Matches are distributed among these distances:
49 34 0.22
50 86 0.55
51 33 0.21
52 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (50 bp):
TCCACTGCAACTTCAAGGATATAGGATTTGATGTCATAGTTTCATTTTGC
Found at i:81304 original size:101 final size:98
Alignment explanation
Indices: 81078--81663 Score: 444
Period size: 101 Copynumber: 5.8 Consensus size: 98
81068 CAATCCAATC
* ** * * * * **
81078 CACTGCAACTTCAGGGATATAGGATTTGATGTCATAATTTTATTTTGCTCCACTGTATCTCCAAG
1 CACTGCAACTTCAGGG-TATAGGATTTGATGTCGTAGCTTCATCTTGCTCCACTGCAACTTTAAG
** * *
81143 GAGAT-AAGATTTGCTTTCAAGCTTCAATCTGATT
65 GAGATAAAGATTTGCTTTGTAGCTTCATTC-GACT
* * * *
81177 CACTGCAATTTCATGGATATAGGATTTGATGTCGTAGTTTCATCTTGCTCCAATGCAACTTTAAG
1 CACTGCAACTTCA-GGGTATAGGATTTGATGTCGTAGCTTCATCTTGCTCCACTGCAACTTTAAG
* * *
81242 GATATAAAGATTTGCTTCTATGGCTTCAGTTCGACT
65 GAGATAAAGATTTGCTT-TGTAGCTTCA-TTCGACT
* * * * *
81278 CACTGCAACTTCATGGGTATAGGATTTGGTTTTGTAGCTTCATCTTGCTCCACTGTAACTTCAAG
1 CACTGCAACTTCA-GGGTATAGGATTTGATGTCGTAGCTTCATCTTGCTCCACTGCAACTTTAAG
*
81343 GAGATAAAAGATTTGCTTTTGTAGCTTCAATTCGACC
65 GAGAT-AAAGATTTGC-TTTGTAGCTTC-ATTCGACT
* * * * * * *
81380 CATTGCAACTTCAAGGGTATAAGATTTGGTTTTGTAGCTTCATCTTGCTCCATTGCAACTCT-AG
1 CACTGCAACTTC-AGGGTATAGGATTTGATGTCGTAGCTTCATCTTGCTCCACTGCAACTTTAAG
* * * * *
81444 AGAGATAAATATTTGCTTCTGTAGTTTGAATCCGACC
65 -GAGATAAAGATTTGCTT-TGTAGCTT-CATTCGACT
* * * * * *
81481 CACTTCAACTTCAGGGGTATATGATTTGATGTTGTAGCTTCATCTTGCTCTACTGTAA-TTTCAG
1 CACTGCAACTTCA-GGGTATAGGATTTGATGTCGTAGCTTCATCTTGCTCCACTGCAACTTTAAG
* *
81545 AGAGATAAAGATTTGCTATTGTAGTTTTCAATCTGA-T
65 -GAGATAAAGATTTGCT-TTGTAG-CTTCATTC-GACT
* * * ** * * * * *
81582 CCACTACAACTTCAGGGATATAGAATTTGATGTCATAATTTCATCTTGCTCTAATGCATCTTCAG
1 -CACTGCAACTTCAGGG-TATAGGATTTGATGTCGTAGCTTCATCTTGCTCCACTGCAACTTTAA
*
81647 GGAGAT-AATATTTGCTT
64 GGAGATAAAGATTTGCTT
81664 ATTGCAACCT
Statistics
Matches: 400, Mismatches: 68, Indels: 37
0.79 0.13 0.07
Matches are distributed among these distances:
99 55 0.14
100 19 0.05
101 180 0.45
102 139 0.35
103 7 0.02
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (98 bp):
CACTGCAACTTCAGGGTATAGGATTTGATGTCGTAGCTTCATCTTGCTCCACTGCAACTTTAAGG
AGATAAAGATTTGCTTTGTAGCTTCATTCGACT
Found at i:81433 original size:50 final size:50
Alignment explanation
Indices: 81122--81603 Score: 245
Period size: 50 Copynumber: 9.5 Consensus size: 50
81112 TAATTTTATT
* * * **
81122 TTGCTCCACTGTATCTCCAAGGAG-ATAAGATTTGC-TTTCAAGCTTCAATC
1 TTGCTCCACTGCAACTTCAAGG-GTATAAGATTTGCTTTTGTAGCTTC-ATC
* * * * * * * * * *
81172 -TGATTCACTGCAATTTCATGGATATAGGATTTGATGTCGTAGTTTCATC
1 TTGCTCCACTGCAACTTCAAGGGTATAAGATTTGCTTTTGTAGCTTCATC
* * * * * *
81221 TTGCTCCAATGCAACTTTAAGGATATAAAGATTTGCTTCTATGGCTTCAGT-
1 TTGCTCCACTGCAACTTCAAGGGTAT-AAGATTTGCTTTTGTAGCTTCA-TC
* * * *
81272 TCGACT-CACTGCAACTTCATGGGTATAGGATTTGGTTTTGTAGCTTCATC
1 TTG-CTCCACTGCAACTTCAAGGGTATAAGATTTGCTTTTGTAGCTTCATC
* *
81322 TTGCTCCACTGTAACTTCAAGGAGATAAAAGATTTGCTTTTGTAGCTTCAAT-
1 TTGCTCCACTGCAACTTCAAGG-G-TATAAGATTTGCTTTTGTAGCTTC-ATC
* * *
81374 TCGAC-CCATTGCAACTTCAAGGGTATAAGATTTGGTTTTGTAGCTTCATC
1 TTG-CTCCACTGCAACTTCAAGGGTATAAGATTTGCTTTTGTAGCTTCATC
* * * * * *
81424 TTGCTCCATTGCAAC-TCTAGAGAG-ATAAATATTTGCTTCTGTAGTTTGAATC
1 TTGCTCCACTGCAACTTC-A-AGGGTAT-AAGATTTGCTTTTGTAGCTT-CATC
* * * * * *
81476 -CGAC-CCACTTCAACTTCAGGGGTATATGATTTGATGTTGTAGCTTCATC
1 TTG-CTCCACTGCAACTTCAAGGGTATAAGATTTGCTTTTGTAGCTTCATC
* * * * * *
81525 TTGCTCTACTGTAATTTCAGAGAG-ATAAAGATTTGCTATTGTAGTTTTCAATC
1 TTGCTCCACTGCAACTTCA-AGGGTAT-AAGATTTGCTTTTGTAG-CTTC-ATC
* *
81578 -TGATCCACTACAACTTC-AGGGATATA
1 TTGCTCCACTGCAACTTCAAGGG-TATA
81604 GAATTTGATG
Statistics
Matches: 317, Mismatches: 86, Indels: 57
0.69 0.19 0.12
Matches are distributed among these distances:
49 38 0.12
50 127 0.40
51 82 0.26
52 64 0.20
53 6 0.02
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (50 bp):
TTGCTCCACTGCAACTTCAAGGGTATAAGATTTGCTTTTGTAGCTTCATC
Found at i:81492 original size:203 final size:201
Alignment explanation
Indices: 81060--81719 Score: 609
Period size: 203 Copynumber: 3.3 Consensus size: 201
81050 GACTTGCTAA
* * ** ** * *
81060 TGTAGTTTCAATCCAATCCACTGCAACTTCAGGGATATAGGATTTGATGTCATAATTTTATTTTG
1 TGTAGTTTCAATCCGACCCACTGCAACTTCAGGG-TATAGGATTTGATGTTGTAGCTTCATCTTG
* * ** ** *
81125 CTCCACTGTATCTCCAAGGAGAT-AAGATTTGC-TTTCAAGCTTCAATCTGATTCACTGCAATTT
65 CTCCACTGTAACTTCAAGGAGATAAAGATTTGCTTTTGTAGCTTCAATCTGACCCACTGCAACTT
* * * * *
81188 CATGGATATAGGATTTGATGTCGTAGTTTCATCTTGCTCCAATGCAACTTTAAGGATATAAAGAT
130 CAAGGATATAAGATTTGATGTCGTAGCTTCATCTTGCTCCAATGCAACTCTAAGGAGATAAAGAT
81253 TTGCTTC
195 TTGCTTC
* * * * * * * *
81260 TATGGCTTCAGTTCGACTCACTGCAACTTCATGGGTATAGGATTTGGTTTTGTAGCTTCATCTTG
1 TGTAGTTTCAATCCGACCCACTGCAACTTCA-GGGTATAGGATTTGATGTTGTAGCTTCATCTTG
*
81325 CTCCACTGTAACTTCAAGGAGATAAAAGATTTGCTTTTGTAGCTTCAAT-TCGACCCATTGCAAC
65 CTCCACTGTAACTTCAAGGAGAT-AAAGATTTGCTTTTGTAGCTTCAATCT-GACCCACTGCAAC
* * * * *
81389 TTCAAGGGTATAAGATTTGGTTTTGTAGCTTCATCTTGCTCCATTGCAACTCT-AGAGAGATAAA
128 TTCAAGGATATAAGATTTGATGTCGTAGCTTCATCTTGCTCCAATGCAACTCTAAG-GAGATAAA
*
81453 TATTTGCTTC
192 GATTTGCTTC
* * *
81463 TGTAGTTTGAATCCGACCCACTTCAACTTCAGGGGTATATGATTTGATGTTGTAGCTTCATCTTG
1 TGTAGTTTCAATCCGACCCACTGCAACTTCA-GGGTATAGGATTTGATGTTGTAGCTTCATCTTG
* * * * * *
81528 CTCTACTGTAATTTC-AGAGAGATAAAGATTTGCTATTGTAGTTTTCAATCTGATCCACTACAAC
65 CTCCACTGTAACTTCAAG-GAGATAAAGATTTGCTTTTGTAG-CTTCAATCTGACCCACTGCAAC
* * ** * * *
81592 TTCAGGGATAT-AGAATTTGATGTCATAATTTCATCTTGCTCTAATGCATCT-TCAGGGAGAT-A
128 TTCAAGGATATAAG-ATTTGATGTCGTAGCTTCATCTTGCTCCAATGCAACTCT-AAGGAGATAA
* *
81654 ATATTTGCTTAT
191 AGATTTGCTT-C
* ** * * *
81666 TGCAACCTT-AATCTGACCCACTACAACTTCAGAGGTATAGGATTTGGTGTTGTA
1 TG-TAGTTTCAATCCGACCCACTGCAACTTCAG-GGTATAGGATTTGATGTTGTA
81720 CTAATCCCTC
Statistics
Matches: 371, Mismatches: 74, Indels: 27
0.79 0.16 0.06
Matches are distributed among these distances:
200 66 0.18
201 3 0.01
202 46 0.12
203 251 0.68
204 5 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (201 bp):
TGTAGTTTCAATCCGACCCACTGCAACTTCAGGGTATAGGATTTGATGTTGTAGCTTCATCTTGC
TCCACTGTAACTTCAAGGAGATAAAGATTTGCTTTTGTAGCTTCAATCTGACCCACTGCAACTTC
AAGGATATAAGATTTGATGTCGTAGCTTCATCTTGCTCCAATGCAACTCTAAGGAGATAAAGATT
TGCTTC
Found at i:82294 original size:45 final size:45
Alignment explanation
Indices: 82242--82339 Score: 115
Period size: 49 Copynumber: 2.1 Consensus size: 45
82232 TGTTTTTTTT
* *
82242 TTTTTGTTAAATGCATCTTTGTTTAAGTAATCTACATCATTAAGTGTT
1 TTTTTGTTAAATGCATCTTTGTTT-AGTAATCTACATCATTAA--CTA
* * *
82290 TTGTTTGTTTAATGCATCTTTGTTTAGTAATCTGCATTATTAACTA
1 TT-TTTGTTAAATGCATCTTTGTTTAGTAATCTACATCATTAACTA
82336 TTTT
1 TTTT
82340 GTTTGTGCAT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
45 2 0.05
46 3 0.07
48 18 0.41
49 21 0.48
ACGTcount: A:0.24, C:0.10, G:0.12, T:0.53
Consensus pattern (45 bp):
TTTTTGTTAAATGCATCTTTGTTTAGTAATCTACATCATTAACTA
Found at i:82340 original size:48 final size:49
Alignment explanation
Indices: 82239--82345 Score: 153
Period size: 48 Copynumber: 2.2 Consensus size: 49
82229 AAGTGTTTTT
* * *
82239 TTTTTTTTGTTAAATGCATCTTTGTTTAAGTAATCTACATCATTAAGTG
1 TTTTGTTTGTTAAATGCATCTTTGTTTAAGTAATCTACATCATTAACTA
* * *
82288 TTTTGTTTGTTTAATGCATCTTTGTTT-AGTAATCTGCATTATTAACTA
1 TTTTGTTTGTTAAATGCATCTTTGTTTAAGTAATCTACATCATTAACTA
82336 TTTTGTTTGT
1 TTTTGTTTGT
82346 GCATTATTAA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
48 27 0.52
49 25 0.48
ACGTcount: A:0.22, C:0.09, G:0.13, T:0.55
Consensus pattern (49 bp):
TTTTGTTTGTTAAATGCATCTTTGTTTAAGTAATCTACATCATTAACTA
Found at i:82352 original size:23 final size:23
Alignment explanation
Indices: 82322--82368 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
82312 TTTAGTAATC
82322 TGCATTATTAACTATTTTGTTTG
1 TGCATTATTAACTATTTTGTTTG
*
82345 TGCATTATTAACTGTTTTGTTTG
1 TGCATTATTAACTATTTTGTTTG
82368 T
1 T
82369 TAAATGCATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.19, C:0.09, G:0.15, T:0.57
Consensus pattern (23 bp):
TGCATTATTAACTATTTTGTTTG
Found at i:82367 original size:71 final size:71
Alignment explanation
Indices: 82280--82416 Score: 238
Period size: 71 Copynumber: 1.9 Consensus size: 71
82270 AATCTACATC
* * *
82280 ATTAAGTGTTTTGTTTGTTTAATGCATCTTTGTTTAGTAATCTGCATTATTAACTATTTTGTTTG
1 ATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCATTATTAACTATTTTGTTTG
82345 TGCATT
66 TGCATT
*
82351 ATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCATTATTAACTGTTTTGTTTG
1 ATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCATTATTAACTATTTTGTTTG
82416 T
66 T
82417 TAAATGCATC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.22, C:0.08, G:0.15, T:0.55
Consensus pattern (71 bp):
ATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCATTATTAACTATTTTGTTTG
TGCATT
Found at i:82447 original size:48 final size:48
Alignment explanation
Indices: 82345--82436 Score: 166
Period size: 48 Copynumber: 1.9 Consensus size: 48
82335 ATTTTGTTTG
* *
82345 TGCATTATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATA
1 TGCATTATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTAAATAATA
82393 TGCATTATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTAAAT
1 TGCATTATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTAAAT
82437 GCCTTGCATT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.25, C:0.09, G:0.14, T:0.52
Consensus pattern (48 bp):
TGCATTATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTAAATAATA
Found at i:90510 original size:16 final size:15
Alignment explanation
Indices: 90479--90514 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
90469 GTCTTTTCTC
*
90479 TTTTTCTCTTCTTTT
1 TTTTTCTCTTCATTT
90494 TTTTTCTCATTCATTT
1 TTTTTCTC-TTCATTT
90510 TTTTT
1 TTTTT
90515 ATGTGACTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTTCTCTTCATTT
Found at i:91127 original size:19 final size:18
Alignment explanation
Indices: 91097--91137 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 18
91087 AACTAAATTA
91097 ACAAAAAGAAATGCAATG
1 ACAAAAAGAAATGCAATG
91115 ACAAAATAGAAATGCAATG
1 ACAAAA-AGAAATGCAATG
91134 ACAA
1 ACAA
91138 TAAAATGCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.61, C:0.12, G:0.15, T:0.12
Consensus pattern (18 bp):
ACAAAAAGAAATGCAATG
Found at i:93142 original size:49 final size:49
Alignment explanation
Indices: 93070--93167 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
93060 GCAATATTCC
93070 AGATTTAGAGATTGCAACTTTGTCTTATGCTGAAGACTTTGCCACTCAT
1 AGATTTAGAGATTGCAACTTTGTCTTATGCTGAAGACTTTGCCACTCAT
93119 AGATTTAGAGATTGCAACTTTGTCTTATGCTGAAGACTTTGCCACTCAT
1 AGATTTAGAGATTGCAACTTTGTCTTATGCTGAAGACTTTGCCACTCAT
93168 CTCTGCTAAG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (49 bp):
AGATTTAGAGATTGCAACTTTGTCTTATGCTGAAGACTTTGCCACTCAT
Found at i:93516 original size:45 final size:45
Alignment explanation
Indices: 93398--93519 Score: 138
Period size: 45 Copynumber: 2.7 Consensus size: 45
93388 CATGCGACAA
* * * * *
93398 CAACCCGGGGTAGCAATTC-AACATAAGTAAGCTATCGTTGTTAGG
1 CAACCCAGGGTAGCAATTCGAA-ATAAGTGAGTTATCATTGTCAGG
* * *
93443 CAACCCAAGGTAGCAATTCGACATAAGTGAGTTATCATTGTCGGG
1 CAACCCAGGGTAGCAATTCGAAATAAGTGAGTTATCATTGTCAGG
* *
93488 CAACCTAGGGTTGCAATTCGAAATAAGTGAGT
1 CAACCCAGGGTAGCAATTCGAAATAAGTGAGT
93520 GATGATTACT
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
45 63 0.98
46 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (45 bp):
CAACCCAGGGTAGCAATTCGAAATAAGTGAGTTATCATTGTCAGG
Found at i:93535 original size:45 final size:44
Alignment explanation
Indices: 93439--93536 Score: 106
Period size: 45 Copynumber: 2.2 Consensus size: 44
93429 CTATCGTTGT
* * *
93439 TAGGCAACCCAAGGTAGCAATTCGACATAAGTGAGTTATCATTG
1 TAGGCAACCCAAGGTAGCAATTCGAAATAAGTGAGTGATCATTC
* * * * *
93483 TCGGGCAACCTAGGGTTGCAATTCGAAATAAGTGAGTGATGATTAC
1 T-AGGCAACCCAAGGTAGCAATTCGAAATAAGTGAGTGATCATT-C
93529 TAGGCAAC
1 TAGGCAAC
93537 TCGGGATGGC
Statistics
Matches: 43, Mismatches: 9, Indels: 3
0.78 0.16 0.05
Matches are distributed among these distances:
44 1 0.02
45 41 0.95
46 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (44 bp):
TAGGCAACCCAAGGTAGCAATTCGAAATAAGTGAGTGATCATTC
Found at i:93931 original size:19 final size:19
Alignment explanation
Indices: 93907--93983 Score: 111
Period size: 19 Copynumber: 4.1 Consensus size: 19
93897 ATCTGTAAGC
*
93907 ATGTGACATTGATGTGAAT
1 ATGTGAAATTGATGTGAAT
*
93926 ATGTGAAATTGATTTGAAT
1 ATGTGAAATTGATGTGAAT
*
93945 AT-TGACATTGATGTGAAT
1 ATGTGAAATTGATGTGAAT
*
93963 ATGTGAAATAGATGTGAAT
1 ATGTGAAATTGATGTGAAT
93982 AT
1 AT
93984 CAAATGTGTT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
18 16 0.31
19 35 0.69
ACGTcount: A:0.36, C:0.03, G:0.23, T:0.38
Consensus pattern (19 bp):
ATGTGAAATTGATGTGAAT
Found at i:93952 original size:37 final size:37
Alignment explanation
Indices: 93910--93983 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
93900 TGTAAGCATG
* *
93910 TGACATTGATGTGAATATGTGAAATTGATTTGAATAT
1 TGACATTGATGTGAATATGTGAAATAGATGTGAATAT
93947 TGACATTGATGTGAATATGTGAAATAGATGTGAATAT
1 TGACATTGATGTGAATATGTGAAATAGATGTGAATAT
93984 CAAATGTGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.36, C:0.03, G:0.23, T:0.38
Consensus pattern (37 bp):
TGACATTGATGTGAATATGTGAAATAGATGTGAATAT
Found at i:107449 original size:14 final size:14
Alignment explanation
Indices: 107430--107459 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
107420 CAACTCTTAC
107430 TTTATTTTTATCCT
1 TTTATTTTTATCCT
*
107444 TTTATTTTTATGCT
1 TTTATTTTTATCCT
107458 TT
1 TT
107460 CAAAACACTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.10, G:0.03, T:0.73
Consensus pattern (14 bp):
TTTATTTTTATCCT
Found at i:113852 original size:17 final size:18
Alignment explanation
Indices: 113815--113856 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
113805 TTTTTTATTT
*
113815 TTTTC-TTTTTCTCGTAT
1 TTTTCTTTTTTCTCGTAC
113832 TTTTCTTTTTTCTC-TAC
1 TTTTCTTTTTTCTCGTAC
113849 TTTT-TTTT
1 TTTTCTTTT
113857 ATCACTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 4 0.17
17 11 0.48
18 8 0.35
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.76
Consensus pattern (18 bp):
TTTTCTTTTTTCTCGTAC
Found at i:116368 original size:39 final size:39
Alignment explanation
Indices: 116325--116423 Score: 153
Period size: 39 Copynumber: 2.5 Consensus size: 39
116315 AATTAATGTC
* *
116325 TCAAACTTAGACACCTTAAAAACAACTATTAAATATATA
1 TCAAACTAAGACACATTAAAAACAACTATTAAATATATA
* * *
116364 TCAAAATAAGACACATTAAAAACAATTATTAAATATGTA
1 TCAAACTAAGACACATTAAAAACAACTATTAAATATATA
116403 TCAAACTAAGACACATTAAAA
1 TCAAACTAAGACACATTAAAA
116424 CCCTATTTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.55, C:0.15, G:0.04, T:0.26
Consensus pattern (39 bp):
TCAAACTAAGACACATTAAAAACAACTATTAAATATATA
Found at i:119506 original size:14 final size:13
Alignment explanation
Indices: 119482--119539 Score: 57
Period size: 12 Copynumber: 4.5 Consensus size: 13
119472 TATCTCTTTT
*
119482 TCTTCCTTTTCATC
1 TCTTTCTTTTC-TC
*
119496 TTTTTCTTTTCTC
1 TCTTTCTTTTCTC
119509 TCTTTCTTTT-TC
1 TCTTTCTTTTCTC
* *
119521 ACTTTCTTTGCTC
1 TCTTTCTTTTCTC
119534 T-TTTCT
1 TCTTTCT
119540 CTCATTTTTC
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
12 15 0.41
13 13 0.35
14 9 0.24
ACGTcount: A:0.03, C:0.28, G:0.02, T:0.67
Consensus pattern (13 bp):
TCTTTCTTTTCTC
Found at i:122021 original size:17 final size:17
Alignment explanation
Indices: 121988--122038 Score: 68
Period size: 17 Copynumber: 3.0 Consensus size: 17
121978 CAGGTGAACA
121988 AACCAACCT-GACGAGCT
1 AACCAACCTAG-CGAGCT
*
122005 AACCAACCTAGCTAGCT
1 AACCAACCTAGCGAGCT
*
122022 AACCCACCTAGCGAGCT
1 AACCAACCTAGCGAGCT
122039 CTGATACCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
17 29 0.97
18 1 0.03
ACGTcount: A:0.33, C:0.37, G:0.16, T:0.14
Consensus pattern (17 bp):
AACCAACCTAGCGAGCT
Found at i:126982 original size:9 final size:8
Alignment explanation
Indices: 126958--126996 Score: 55
Period size: 7 Copynumber: 5.0 Consensus size: 8
126948 ACCCACATAA
126958 TTTATTTT
1 TTTATTTT
126966 TTTA-TTT
1 TTTATTTT
126973 TTTATTTTT
1 TTTA-TTTT
126982 TTTATTTT
1 TTTATTTT
126990 TTT-TTTT
1 TTTATTTT
126997 GCACTTTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
7 11 0.38
8 11 0.38
9 7 0.24
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (8 bp):
TTTATTTT
Found at i:126983 original size:16 final size:16
Alignment explanation
Indices: 126958--126996 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
126948 ACCCACATAA
126958 TTTA-TTTTTTTATTT
1 TTTATTTTTTTTATTT
126973 TTTATTTTTTTTATTT
1 TTTATTTTTTTTATTT
126989 TTT-TTTTT
1 TTTATTTTT
126997 GCACTTTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (16 bp):
TTTATTTTTTTTATTT
Found at i:130189 original size:17 final size:18
Alignment explanation
Indices: 130150--130190 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
130140 CCACATAATT
*
130150 TTTTTAAAATTTTTTTAA
1 TTTTTAAAATTTTTTCAA
130168 TTTTT-AAATTTTTTCATA
1 TTTTTAAAATTTTTTCA-A
130186 TTTTT
1 TTTTT
130191 CTTTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTAAAATTTTTTCAA
Found at i:131660 original size:20 final size:20
Alignment explanation
Indices: 131631--131675 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
131621 GATGTATGTA
*
131631 TGCACTTCGGTGCCCCTATT
1 TGCACGTCGGTGCCCCTATT
*
131651 TGCACGTCGGTGCCCCTGTT
1 TGCACGTCGGTGCCCCTATT
131671 TGCAC
1 TGCAC
131676 TTCAAAGCCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.09, C:0.36, G:0.24, T:0.31
Consensus pattern (20 bp):
TGCACGTCGGTGCCCCTATT
Found at i:137141 original size:12 final size:12
Alignment explanation
Indices: 137120--137162 Score: 54
Period size: 11 Copynumber: 3.8 Consensus size: 12
137110 TCAGCTCATG
*
137120 GCCACATCAACA
1 GCCACGTCAACA
137132 GCCACGTCAACA
1 GCCACGTCAACA
*
137144 -CCACGTCAA-T
1 GCCACGTCAACA
137154 GCCACGTCA
1 GCCACGTCA
137163 GCCACGTGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 17 0.61
12 11 0.39
ACGTcount: A:0.33, C:0.42, G:0.14, T:0.12
Consensus pattern (12 bp):
GCCACGTCAACA
Found at i:144596 original size:38 final size:37
Alignment explanation
Indices: 144547--145179 Score: 327
Period size: 38 Copynumber: 16.2 Consensus size: 37
144537 TAAAGCACAC
*
144547 CAATCTCTTACCCCAATCATGGGGCAGATTGAAGCAT
1 CAATCTCTTACCCCGATCATGGGGCAGATTGAAGCAT
*
144584 CAGATCTTTTACCCCGATCATGGGGCAGATTGAAGCAT
1 CA-ATCTCTTACCCCGATCATGGGGCAGATTGAAGCAT
* *** * *
144622 CCAATCTTTTACCTTAATCA-GAAGGCAGATTGAAGACACAC
1 -CAATCTCTTACCCCGATCATG-GGGCAGATTGAAG---CAT
144663 CAATCTCTTACCCCGATCATGGGGCAGATTGAAGACAACAT
1 CAATCTCTTACCCCGATCATGGGGCAGATTGAAG----CAT
*
144704 CCAATCTCTTACCCCGATCATAGGGCAGATTGAAG-AGT
1 -CAATCTCTTACCCCGATCATGGGGCAGATTGAAGCA-T
* *** * * * *
144742 CTAATCTTTTACCTTAAGCA-GAAGGTAGATTGAAGACACAC
1 C-AATCTCTTACCCCGATCATG-GGGCAGATTGAAG---CAT
144783 CAATCTCTTACCCCGATCATGGGGCAGATTGAAGCAT
1 CAATCTCTTACCCCGATCATGGGGCAGATTGAAGCAT
** ** * *
144820 CAGATCAT-TTACCCTAATCA-GAGGAAAGATGGAAGACACAC
1 CA-ATC-TCTTACCCCGATCATG-GGGCAGATTGAAG---CAT
* * *
144861 CAATCTCTTACCTCGATTATGGAGCAGATTGAAGCAT
1 CAATCTCTTACCCCGATCATGGGGCAGATTGAAGCAT
** * * * *
144898 CTAATCAT-TTACCCTAATTA-GAAGGCAGATTTAAGGCACAC
1 C-AATC-TCTTACCCCGATCATG-GGGCAGATTGAA-G--CAT
* *
144939 CAATCTCTTACCCCGATCATGGGACAGATTGAAGTAT
1 CAATCTCTTACCCCGATCATGGGGCAGATTGAAGCAT
*** * *
144976 CAGATC-CTTTACCTTAATCA-GAGGGTAGATTGAAGACACAC
1 CA-ATCTC-TTACCCCGATCATG-GGGCAGATTGAAG---CAT
* * *
145017 CAATCTTTTACCCCGATCATGAGGCAAATTGAAGATATCAT
1 CAATCTCTTACCCCGATCATGGGGCAGATTGAAG----CAT
* * * *
145058 CCAAACTCTTACCCTGATCATGGGGTAGATT-ACAGTCGT
1 -CAATCTCTTACCCCGATCATGGGGCAGATTGA-AG-CAT
145097 CCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCAT
1 -CAATCTCTTACCCCGATCATGGGGCAGATTGAAGCAT
* **
145135 CTAATCTTTTACCCTAATCA-GAGGGCAGATTGAAGCTAT
1 C-AATCTCTTACCCCGATCATG-GGGCAGATTGAAGC-AT
145174 C-ATCTC
1 CAATCTC
145180 ACAGAATCAA
Statistics
Matches: 452, Mismatches: 96, Indels: 96
0.70 0.15 0.15
Matches are distributed among these distances:
37 25 0.06
38 183 0.40
39 44 0.10
40 116 0.26
41 24 0.05
42 60 0.13
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.26
Consensus pattern (37 bp):
CAATCTCTTACCCCGATCATGGGGCAGATTGAAGCAT
Found at i:144755 original size:120 final size:116
Alignment explanation
Indices: 144542--145088 Score: 495
Period size: 120 Copynumber: 4.6 Consensus size: 116
144532 TGCAATAAAG
* * *
144542 CACACCAATCTCTTACCCCAATCATGGGGCAGATTGAAGCAT-CAGATCTTTTACCCCGATCATG
1 CACACCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCCA-ATCTCTTACCCCGATCATA
144606 GGGCAGATTGAAGCATCCAATCTTTTACCTTAATCAGAAGGCAGATTGAAGA
65 GGGCAGATTGAAGCATCCAATCTTTTACCTTAATCAGAAGGCAGATTGAAGA
144658 CACACCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACAACATCCAATCTCTTACCCCGATC
1 CACACCAATCTCTTACCCCGATCATGGGGCAGATTGAAG----CATCCAATCTCTTACCCCGATC
* * *
144723 ATAGGGCAGATTGAAG-AGTCTAATCTTTTACCTTAAGCAGAAGGTAGATTGAAGA
62 ATAGGGCAGATTGAAGCA-TCCAATCTTTTACCTTAATCAGAAGGCAGATTGAAGA
** *
144778 CACACCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCAT-CAGATCAT-TTACCCTAATCAG
1 CACACCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCCA-ATC-TCTTACCCCGATCAT
** * * * ** * *
144841 AGGAAAGATGGAAGACACACCAATCTCTTACCTCGATTATGGA-GCAGATTGAAG-
64 AGGGCAGATTGAAG-CA-TCCAATCTTTTACCTTAATCA-GAAGGCAGATTGAAGA
* * ** * * * *
144895 CA-TCTAATCAT-TTACCCTAATTA-GAAGGCAGATTTAAGGCACACCAATCTCTTACCCCGATC
1 CACACCAATC-TCTTACCCCGATCATG-GGGCAGATTGAA-GCA-TCCAATCTCTTACCCCGATC
* * * *
144957 AT-GGGACAGATTGAAGTAT-CAGATCCTTTACCTTAATCAGAGGGTAGATTGAAGA
62 ATAGGG-CAGATTGAAGCATCCA-ATCTTTTACCTTAATCAGAAGGCAGATTGAAGA
* * * * *
145012 CACACCAATCTTTTACCCCGATCATGAGGCAAATTGAAGATATCATCCAAACTCTTACCCTGATC
1 CACACCAATCTCTTACCCCGATCATGGGGCAGATTGAAG----CATCCAATCTCTTACCCCGATC
* *
145077 ATGGGGTAGATT
62 ATAGGGCAGATT
145089 ACAGTCGTCC
Statistics
Matches: 345, Mismatches: 57, Indels: 54
0.76 0.12 0.12
Matches are distributed among these distances:
115 6 0.02
116 111 0.32
117 15 0.04
118 70 0.20
119 6 0.02
120 130 0.38
121 7 0.02
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (116 bp):
CACACCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCCAATCTCTTACCCCGATCATAG
GGCAGATTGAAGCATCCAATCTTTTACCTTAATCAGAAGGCAGATTGAAGA
Found at i:144808 original size:78 final size:78
Alignment explanation
Indices: 144542--145169 Score: 553
Period size: 78 Copynumber: 8.0 Consensus size: 78
144532 TGCAATAAAG
* **
144542 CACACCAATCTCTTACCCCAATCATGGGGCAGATTGAAGCATC-AGATCTTTTACCCCGATCATG
1 CACACCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCTA-ATCTTTTACCCTAATCA-G
* *
144606 -GGGCAGATTGAAG-
64 AAGGTAGATTGAAGA
* * *** * * * * **
144619 CA-TCCAATCTTTTACCTTAATCA-GAAGGCAGATTGAAGACACACCAATCTCTTACCCCGATCA
1 CACACCAATCTCTTACCCCGATCATG-GGGCAGATTGAAG-CA-TCTAATCTTTTACCCTAATCA
* *
144682 TG-GGGCAGATTGAAGA
63 -GAAGGTAGATTGAAGA
* * *
144698 CAACATCCAATCTCTTACCCCGATCATAGGGCAGATTGAAG-AGTCTAATCTTTTACCTTAAGCA
1 C-ACA-CCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCA-TCTAATCTTTTACCCTAATCA
144762 GAAGGTAGATTGAAGA
63 GAAGGTAGATTGAAGA
*
144778 CACACCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATC-AGATCATTTACCCTAATCAG-
1 CACACCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCTA-ATCTTTTACCCTAATCAGA
* *
144841 AGGAAAGATGGAAGA
65 AGG-TAGATTGAAGA
* * * * *
144856 CACACCAATCTCTTACCTCGATTATGGAGCAGATTGAAGCATCTAATCATTTACCCTAATTAGAA
1 CACACCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCTAATCTTTTACCCTAATCAGAA
* * *
144921 GGCAGATTTAAGG
66 GGTAGATTGAAGA
* * * *
144934 CACACCAATCTCTTACCCCGATCATGGGACAGATTGAAGTATC-AGATCCTTTACCTTAATCAGA
1 CACACCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCTA-ATCTTTTACCCTAATCAGA
*
144998 GGGTAGATTGAAGA
65 AGGTAGATTGAAGA
* * * * * * *
145012 CACACCAATCTTTTACCCCGATCATGAGGCAAATTGAAGATATCATCCAAACTCTTACCCTGATC
1 CACACCAATCTCTTACCCCGATCATGGGGCAGATTGAAG----CATCTAATCTTTTACCCTAATC
* *
145077 ATG-GGGTAGATT-ACAGT
62 A-GAAGGTAGATTGA-AGA
** *
145094 C-GTCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCTAATCTTTTACCCTAATCAGAG
1 CACACCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCTAATCTTTTACCCTAATCAGAA
*
145158 GGCAGATTGAAG
66 GGTAGATTGAAG
145170 CTATCATCTC
Statistics
Matches: 455, Mismatches: 71, Indels: 50
0.79 0.12 0.09
Matches are distributed among these distances:
75 1 0.00
76 30 0.07
77 38 0.08
78 256 0.56
79 11 0.02
80 29 0.06
81 33 0.07
82 55 0.12
83 2 0.00
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (78 bp):
CACACCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCATCTAATCTTTTACCCTAATCAGAA
GGTAGATTGAAGA
Found at i:147283 original size:30 final size:31
Alignment explanation
Indices: 147155--147323 Score: 152
Period size: 30 Copynumber: 5.6 Consensus size: 31
147145 AAAATTCAAA
* * * * *
147155 TTTAACCCTTGAGCTTTTTA-AAAATTCTTT
1 TTTAACCCTCGAACTTTCTAGAAATTTCATT
* * * *
147185 TTTGACCCCCAAACTTTTTA-AAATTTCATT
1 TTTAACCCTCGAACTTTCTAGAAATTTCATT
*
147215 TTTAACCCTCAAACTTTCTA-AAATTTCATT
1 TTTAACCCTCGAACTTTCTAGAAATTTCATT
*
147245 TTTAACCCTCGATCTTTCTAGAAATTTCA-T
1 TTTAACCCTCGAACTTTCTAGAAATTTCATT
* * *
147275 TTTCACCCT-GAACATTCTTGAAATTTCA-T
1 TTTAACCCTCGAACTTTCTAGAAATTTCATT
* *
147304 TTTGACCCTTGAACTTTCTA
1 TTTAACCCTCGAACTTTCTA
147324 AAAAAATTAC
Statistics
Matches: 118, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
29 25 0.21
30 85 0.72
31 8 0.07
ACGTcount: A:0.28, C:0.22, G:0.05, T:0.44
Consensus pattern (31 bp):
TTTAACCCTCGAACTTTCTAGAAATTTCATT
Found at i:147301 original size:29 final size:29
Alignment explanation
Indices: 147196--147344 Score: 140
Period size: 30 Copynumber: 5.0 Consensus size: 29
147186 TTGACCCCCA
* *
147196 AACTTTTTA-AAATTTCATTTTTAACCCTCA
1 AACTTTCTAGAAATTTCA-TTTTAACCCT-G
147226 AACTTTCTA-AAATTTCATTTTTAACCCTCG
1 AACTTTCTAGAAATTTCA-TTTTAACCCT-G
* *
147256 ATCTTTCTAGAAATTTCATTTTCACCCTG
1 AACTTTCTAGAAATTTCATTTTAACCCTG
* * *
147285 AACATTCTTGAAATTTCATTTTGACCCTTG
1 AACTTTCTAGAAATTTCATTTTAACCC-TG
* *
147315 AACTTTCTAAAAAAATTACATTTTAACCCT
1 AACTTTCT--AGAAATTTCATTTTAACCCT
147345 TAAAAGTTTC
Statistics
Matches: 102, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
29 24 0.24
30 54 0.53
31 9 0.09
32 15 0.15
ACGTcount: A:0.32, C:0.21, G:0.04, T:0.43
Consensus pattern (29 bp):
AACTTTCTAGAAATTTCATTTTAACCCTG
Found at i:147331 original size:61 final size:60
Alignment explanation
Indices: 147173--147344 Score: 152
Period size: 60 Copynumber: 2.9 Consensus size: 60
147163 TTGAGCTTTT
* * * * * * *
147173 TAAAAATTCTTTTTTGACCCCCAAACTTT-TTAAAATTTCATTTTTAACCCTCAAACTTTC
1 TAAAATTTCATTTTTAACCCTCGAACTTTCTAAAAATTTCA-TTTTAACCCTCAAACATTC
* * * *
147233 TAAAATTTCATTTTTAACCCTCGATCTTTCTAGAAATTTCATTTTCACCCT-GAACATTC
1 TAAAATTTCATTTTTAACCCTCGAACTTTCTAAAAATTTCATTTTAACCCTCAAACATTC
* * * *
147292 TTGAAATTTCA-TTTTGACCCTTGAACTTTCTAAAAAAATTACATTTTAACCCT
1 -TAAAATTTCATTTTTAACCCTCGAACTTTCT--AAAAATTTCATTTTAACCCT
147345 TAAAAGTTTC
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
59 23 0.26
60 41 0.46
61 26 0.29
ACGTcount: A:0.31, C:0.22, G:0.04, T:0.42
Consensus pattern (60 bp):
TAAAATTTCATTTTTAACCCTCGAACTTTCTAAAAATTTCATTTTAACCCTCAAACATTC
Found at i:149957 original size:181 final size:181
Alignment explanation
Indices: 149653--150020 Score: 619
Period size: 181 Copynumber: 2.0 Consensus size: 181
149643 TAAAGGAAGA
*
149653 GCTTGGAATTCAAGAAGAAAATAGAAGTTTTAGAAGAGGAAAAGATGAAGTTAGGATTGGATATA
1 GCTTGGAATTCAAGAAGAAAATAGAAGTTTTAAAAGAGGAAAAGATGAAGTTAGGATTGGATATA
* * *
149718 GATATCCATAAGTTAAAGGCTGAAAAGTTAGGAAAAGGAAAGAACAAAGCCAAAGAAGACTTAAA
66 GATATCCATAAGTTAAAGGCTAAAAAGTTAAGAAAAGGAAAAAACAAAGCCAAAGAAGACTTAAA
*
149783 AGACTTGAAGATGCATTACAAAAAACTTCGTTTATCCATGAAAACTGCTGG
131 AGACTTGAAGATGCATTACAAAAAACTTCGTTTATCCATGAAAACTGCTAG
* * *
149834 GCTTGGAATTCGAGAAGTAAATAGAAGTTTTAAAAGAGGAAAAGATGAAGTTAGGATTGGATGTA
1 GCTTGGAATTCAAGAAGAAAATAGAAGTTTTAAAAGAGGAAAAGATGAAGTTAGGATTGGATATA
* * * *
149899 GATATCCATAAGTTAGAGGCTAAAAAGTTAAGAAAATGAAAAAACAAAGCCGAAGAAGACTTAGA
66 GATATCCATAAGTTAAAGGCTAAAAAGTTAAGAAAAGGAAAAAACAAAGCCAAAGAAGACTTAAA
*
149964 AGACTTGAAGATGCATTACAAAAAACTTCGTTTATCCATGAAGACTGCTAG
131 AGACTTGAAGATGCATTACAAAAAACTTCGTTTATCCATGAAAACTGCTAG
150015 GCTTGG
1 GCTTGG
150021 CAAAACATCA
Statistics
Matches: 174, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
181 174 1.00
ACGTcount: A:0.44, C:0.10, G:0.23, T:0.23
Consensus pattern (181 bp):
GCTTGGAATTCAAGAAGAAAATAGAAGTTTTAAAAGAGGAAAAGATGAAGTTAGGATTGGATATA
GATATCCATAAGTTAAAGGCTAAAAAGTTAAGAAAAGGAAAAAACAAAGCCAAAGAAGACTTAAA
AGACTTGAAGATGCATTACAAAAAACTTCGTTTATCCATGAAAACTGCTAG
Found at i:154824 original size:43 final size:43
Alignment explanation
Indices: 154763--154897 Score: 191
Period size: 43 Copynumber: 3.1 Consensus size: 43
154753 AAAACCCCAT
* *
154763 TAAAAAACATGGTCTTTAACAACGCTTTTTGTACAAACGCCGC
1 TAAAGAACATGGTCTTTAACAACGCTTTTTGTACAAACACCGC
* * *
154806 TAAAGAACATGGTCTTTAACGATGCTTTTTGCACAAACACCGC
1 TAAAGAACATGGTCTTTAACAACGCTTTTTGTACAAACACCGC
* *
154849 TAAAGAACATGATCTTTAGCAACGCTTTTCT-TACAAACACCGC
1 TAAAGAACATGGTCTTTAACAACGCTTTT-TGTACAAACACCGC
154892 TAAAGA
1 TAAAGA
154898 CGTCTTTAGC
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
43 80 0.99
44 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (43 bp):
TAAAGAACATGGTCTTTAACAACGCTTTTTGTACAAACACCGC
Found at i:154877 original size:86 final size:82
Alignment explanation
Indices: 154763--154951 Score: 224
Period size: 86 Copynumber: 2.3 Consensus size: 82
154753 AAAACCCCAT
* *
154763 TAAAAAACATGGTCTTTAACAACGCTTTT-TGTACAAACGCCGCTAAAGAACATGGTCTTTAACG
1 TAAAAAACATGATCTTTAACAACGCTTTTCT-TACAAACACCGCTAAAG-AC---GTCTTTAACG
154827 ATGCTTTT-TGCACAAACACCGC
61 ATGCTTTTCT-CACAAACACCGC
* * *
154849 TAAAGAACATGATCTTTAGCAACGCTTTTCTTACAAACACCGCTAAAGACGTCTTTAGCGATGCT
1 TAAAAAACATGATCTTTAACAACGCTTTTCTTACAAACACCGCTAAAGACGTCTTTAACGATGCT
*
154914 TTTCTCACAAACCCCGC
66 TTTCTCACAAACACCGC
154931 TAAAATTAACA-GAT-TTTAACA
1 TAAAA--AACATGATCTTTAACA
154952 GCCCATTTTA
Statistics
Matches: 91, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
82 38 0.42
83 4 0.04
84 4 0.04
85 2 0.02
86 42 0.46
87 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (82 bp):
TAAAAAACATGATCTTTAACAACGCTTTTCTTACAAACACCGCTAAAGACGTCTTTAACGATGCT
TTTCTCACAAACACCGC
Found at i:154915 original size:39 final size:41
Alignment explanation
Indices: 154786--154934 Score: 153
Period size: 43 Copynumber: 3.6 Consensus size: 41
154776 CTTTAACAAC
* * *
154786 GCTTTTTGTACAAACGCCGCTAAAGAACATGGTCTTTAACGAT
1 GCTTTTTGCACAAACACCGCTAAAGAACA--GTCTTTAGCGAT
* *
154829 GCTTTTTGCACAAACACCGCTAAAGAACATGATCTTTAGCAAC
1 GCTTTTTGCACAAACACCGCTAAAGAACA-G-TCTTTAGCGAT
*
154872 GCTTTTCT-TACAAACACCGCTAAAG-AC-GTCTTTAGCGAT
1 GCTTTT-TGCACAAACACCGCTAAAGAACAGTCTTTAGCGAT
*
154911 GCTTTTCT-CACAAACCCCGCTAAA
1 GCTTTT-TGCACAAACACCGCTAAA
154935 ATTAACAGAT
Statistics
Matches: 93, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 31 0.33
40 1 0.01
42 3 0.03
43 57 0.61
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (41 bp):
GCTTTTTGCACAAACACCGCTAAAGAACAGTCTTTAGCGAT
Found at i:159418 original size:13 final size:15
Alignment explanation
Indices: 159379--159425 Score: 53
Period size: 14 Copynumber: 3.1 Consensus size: 15
159369 TTTATATAAA
159379 TTTTAAAATTTTAGAATT
1 TTTTAAAA-TTT-GAA-T
159397 TTTTAAAATTT-AAT
1 TTTTAAAATTTGAAT
159411 TTTT-AAATTTGAAT
1 TTTTAAAATTTGAAT
159425 T
1 T
159426 AAATGACATA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 6 0.21
14 9 0.32
15 2 0.07
17 3 0.11
18 8 0.29
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.57
Consensus pattern (15 bp):
TTTTAAAATTTGAAT
Found at i:159571 original size:41 final size:41
Alignment explanation
Indices: 159526--159629 Score: 147
Period size: 41 Copynumber: 2.5 Consensus size: 41
159516 AAAGCGTCAC
* *
159526 TAATGCTCTGACCTTTAGCGGC-GTTTCCTCATAAGTGTTGT
1 TAATGCTATGACCTTTAGCGGCGGTTT-CTCATAAGCGTTGT
**
159567 TAATGCTATGACCTTTAGCAACGGTTTCTCATAAGCGTTGT
1 TAATGCTATGACCTTTAGCGGCGGTTTCTCATAAGCGTTGT
*
159608 TAATGCTTTGACCTTTAGCGGC
1 TAATGCTATGACCTTTAGCGGC
159630 ATTTATTGAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 51 0.93
42 4 0.07
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (41 bp):
TAATGCTATGACCTTTAGCGGCGGTTTCTCATAAGCGTTGT
Found at i:159644 original size:41 final size:41
Alignment explanation
Indices: 159526--159674 Score: 131
Period size: 41 Copynumber: 3.7 Consensus size: 41
159516 AAAGCGTCAC
* * * *
159526 TAATGCTCTGACCTTTAGCGGCGTTTCCTCATAAGTGTTGT
1 TAATGCTTTGACCTTTAGCGGCGTTTACTCAAAAGCGTTGT
* ** *
159567 TAATGCTATGACCTTTAGCAACGGTTT-CTCATAAGCGTTGT
1 TAATGCTTTGACCTTTAGCGGC-GTTTACTCAAAAGCGTTGT
* * * ** *
159608 TAATGCTTTGACCTTTAGCGGCATTTATTGAAAAGCGCCGC
1 TAATGCTTTGACCTTTAGCGGCGTTTACTCAAAAGCGTTGT
* *
159649 TATTGCTTT-ACCTTTTGCGGCGTTTA
1 TAATGCTTTGACCTTTAGCGGCGTTTA
159675 TAGAAAAACA
Statistics
Matches: 89, Mismatches: 17, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
40 18 0.20
41 67 0.75
42 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (41 bp):
TAATGCTTTGACCTTTAGCGGCGTTTACTCAAAAGCGTTGT
Found at i:159669 original size:40 final size:40
Alignment explanation
Indices: 159611--159708 Score: 142
Period size: 40 Copynumber: 2.4 Consensus size: 40
159601 GCGTTGTTAA
* * * *
159611 TGCTTTGACCTTTAGCGGCATTTATTGAAAAGCGCCGCTAT
1 TGCTTT-ACCTTTTGCGGCATTTATAGAAAAACACCGCTAT
*
159652 TGCTTTACCTTTTGCGGCGTTTATAGAAAAACACCGCTAT
1 TGCTTTACCTTTTGCGGCATTTATAGAAAAACACCGCTAT
159692 TGCTTTACCTTTTGCGG
1 TGCTTTACCTTTTGCGG
159709 TGTTTTCTGT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
40 46 0.88
41 6 0.12
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (40 bp):
TGCTTTACCTTTTGCGGCATTTATAGAAAAACACCGCTAT
Found at i:161145 original size:46 final size:46
Alignment explanation
Indices: 161061--161150 Score: 117
Period size: 46 Copynumber: 2.0 Consensus size: 46
161051 ACTACAGTTA
* * **
161061 TGTGGTTGTTATCGGCAAATATGTGGTGGCTTGTCCACAATGTGAC
1 TGTGGTTGTTATCGACAAATATATGGTGGCTTACCCACAATGTGAC
* * *
161107 TGTGGTTGTTATCGACAATTATATGGTGGTTTACCCACATTGTG
1 TGTGGTTGTTATCGACAAATATATGGTGGCTTACCCACAATGTG
161151 CTATGTGACC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.20, C:0.14, G:0.28, T:0.38
Consensus pattern (46 bp):
TGTGGTTGTTATCGACAAATATATGGTGGCTTACCCACAATGTGAC
Found at i:166423 original size:17 final size:17
Alignment explanation
Indices: 166401--166434 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
166391 TAGAACATAT
166401 GTTATCATAGCCAAAGA
1 GTTATCATAGCCAAAGA
*
166418 GTTATCATAGTCAAAGA
1 GTTATCATAGCCAAAGA
166435 AGAGGCTACG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (17 bp):
GTTATCATAGCCAAAGA
Found at i:170541 original size:195 final size:193
Alignment explanation
Indices: 170194--170563 Score: 483
Period size: 195 Copynumber: 1.9 Consensus size: 193
170184 GAAAAGAAAT
* * * *
170194 ATGGATCCTAAATGGATTACAAGCCCTACGATGGTTGAGATTTATGCATAAGTGCATATTCTCGA
1 ATGGATCCTAAACGGATTACAAGCCCTACGATGGCTGAGATCTATGCATAAGTGCATACTCTCGA
* * * * * *
170259 CAACTCGTGTGAGCAGCATTGTTAGGGAACAATTATATGCACAAATACCGTATCGATGGCTGAGG
66 CAACTCATGTGAGCAGCATCGTTAAGGAACAATTATATACACAAACACCGTATCAATGGCTGAGG
** * *
170324 TACCGCATATGTTGCGAGTCCTCGACAGCTCGTGTTAGCAACATCTTGACTTGAGAAAGAGAC
131 TACCGCATACATTGCGAGTCCTCGACAACTCGTGTGAGCAACATCTTGACTTGAGAAAGAGAC
* * * *
170387 ATGGATCCTAAACGGATTATAAGCCCTACGATGGCTGGGA-CTATGCTTTA-TGCATACTCTCGA
1 ATGGATCCTAAACGGATTACAAGCCCTACGATGGCTGAGATCTATGCATAAGTGCATACTCTCGA
* * *
170450 CAGCTCATGTGAGCAGCATCGTTAAGGAACAGTTTATAGTACTGACAAGCACCGTATCAATGGCT
66 CAACTCATGTGAGCAGCATCGTTAAGGAACA-ATTATA-TAC--ACAAACACCGTATCAATGGCT
* *
170515 GGGGTACCGCATACATTGCGAGTCCTCGACAACTCGTGTGAGCAGCATC
127 GAGGTACCGCATACATTGCGAGTCCTCGACAACTCGTGTGAGCAACATC
170564 GAGTATTGGT
Statistics
Matches: 150, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
191 39 0.26
192 12 0.08
193 38 0.25
195 61 0.41
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (193 bp):
ATGGATCCTAAACGGATTACAAGCCCTACGATGGCTGAGATCTATGCATAAGTGCATACTCTCGA
CAACTCATGTGAGCAGCATCGTTAAGGAACAATTATATACACAAACACCGTATCAATGGCTGAGG
TACCGCATACATTGCGAGTCCTCGACAACTCGTGTGAGCAACATCTTGACTTGAGAAAGAGAC
Found at i:173236 original size:7 final size:7
Alignment explanation
Indices: 173224--173256 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
173214 ATTTTATATA
173224 GAATTTT
1 GAATTTT
173231 GAATTTT
1 GAATTTT
173238 GAATTTT
1 GAATTTT
173245 -AATTATT
1 GAATT-TT
173252 GAATT
1 GAATT
173257 AAAAGTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 4 0.17
7 16 0.67
8 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (7 bp):
GAATTTT
Done.