Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012492.1 Kokia drynarioides strain JFW-HI SEQ_127496, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10374
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37


Found at i:150 original size:15 final size:16

Alignment explanation


    Indices: 124--153  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

        114 TTAAGAAGGA

                            
        124 AACAGAAAAAACAGAG
          1 AACAGAAAAAACAGAG

                           
        140 AACAG-AAAAACAGA
          1 AACAGAAAAAACAGA

        154 CGTTGCGTGG


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    9  0.64
  16    5  0.36

ACGTcount: A:0.70, C:0.13, G:0.17, T:0.00


Consensus pattern (16 bp):   
AACAGAAAAAACAGAG

Found at i:5592 original size:2 final size:2

Alignment explanation


    Indices: 5587--5612  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

       5577 GCTTTTTTTA

                                                  
       5587 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

       5613 GAGCTTGCAC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.