Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012494.1 Kokia drynarioides strain JFW-HI SEQ_127498, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 30089
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.29
Warning! 132 characters in sequence are not A, C, G, or T
Found at i:889 original size:35 final size:34
Alignment explanation
Indices: 850--958 Score: 125
Period size: 35 Copynumber: 3.1 Consensus size: 34
840 CAAACTCATC
*
850 TTAAATTTATTTTAAGA-TTAAATTT-GTTTAAAAAT
1 TTAAATTTATTTTAA-ATTTAAATTTAATTT--AAAT
*
885 TTAAATTTATTTTAAATTTAAATTTAATTTAAGT
1 TTAAATTTATTTTAAATTTAAATTTAATTTAAAT
*
919 TTAAATTTATTTTTAAATTTAAAATT-ATTATAAAT
1 TTAAATTTA-TTTTAAATTTAAATTTAATT-TAAAT
954 TTAAA
1 TTAAA
959 ATAAATAAAG
Statistics
Matches: 66, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
34 16 0.24
35 47 0.71
36 3 0.05
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (34 bp):
TTAAATTTATTTTAAATTTAAATTTAATTTAAAT
Found at i:892 original size:6 final size:6
Alignment explanation
Indices: 881--958 Score: 74
Period size: 6 Copynumber: 13.5 Consensus size: 6
871 ATTTGTTTAA
* *
881 AAATTT AAATTT -ATTTT AAATTT AAATTT -AATTT AAGTTT AAATTT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
** *
927 ATTTTT AAATTT AAAATT --ATTAT AAATTT AAA
1 AAATTT AAATTT AAATTT AAATT-T AAATTT AAA
959 ATAAATAAAG
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
4 2 0.04
5 10 0.18
6 42 0.74
7 3 0.05
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (6 bp):
AAATTT
Found at i:900 original size:11 final size:11
Alignment explanation
Indices: 884--939 Score: 60
Period size: 11 Copynumber: 4.9 Consensus size: 11
874 TGTTTAAAAA
884 TTTAAATTTAT
1 TTTAAATTTAT
*
895 TTTAAATTTAAA
1 TTTAAATTT-AT
*
907 TTT-AATTTAAG
1 TTTAAATTT-AT
918 TTTAAATTTATT
1 TTTAAATTTA-T
930 TTTAAATTTA
1 TTTAAATTTA
940 AAATTATTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
11 20 0.51
12 19 0.49
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (11 bp):
TTTAAATTTAT
Found at i:907 original size:52 final size:52
Alignment explanation
Indices: 850--958 Score: 155
Period size: 52 Copynumber: 2.1 Consensus size: 52
840 CAAACTCATC
* * * *
850 TTAAATTTATTTTAAGATTAAATTTGTTTAAAAATTTAAATTTATTTTAAAT
1 TTAAATTTAATTTAAGATTAAATTTATTTAAAAATTTAAAATTATTATAAAT
* **
902 TTAAATTTAATTTAAGTTTAAATTTATTTTTAAATTTAAAATTATTATAAAT
1 TTAAATTTAATTTAAGATTAAATTTATTTAAAAATTTAAAATTATTATAAAT
954 TTAAA
1 TTAAA
959 ATAAATAAAG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (52 bp):
TTAAATTTAATTTAAGATTAAATTTATTTAAAAATTTAAAATTATTATAAAT
Found at i:960 original size:17 final size:17
Alignment explanation
Indices: 850--958 Score: 130
Period size: 17 Copynumber: 6.3 Consensus size: 17
840 CAAACTCATC
850 TTAAATTTATTTTAAGA-
1 TTAAATTTATTTTAA-AT
* *
867 TTAAATTTGTTTAAAAAT
1 TTAAATTTATTT-TAAAT
885 TTAAATTTATTTTAAAT
1 TTAAATTTATTTTAAAT
* *
902 TTAAATTTAATTTAAGT
1 TTAAATTTATTTTAAAT
919 TTAAATTTATTTTTAAAT
1 TTAAATTTA-TTTTAAAT
* *
937 TTAAAATTATTATAAAT
1 TTAAATTTATTTTAAAT
954 TTAAA
1 TTAAA
959 ATAAATAAAG
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
17 52 0.66
18 27 0.34
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TTAAATTTATTTTAAAT
Found at i:1662 original size:19 final size:18
Alignment explanation
Indices: 1621--1665 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
1611 AATAATATCT
*
1621 ATAATAATATCAATGGTA
1 ATAATAATAACAATGGTA
* *
1639 TTAATAATAAACAGTGGTA
1 ATAATAAT-AACAATGGTA
1658 ATAATAAT
1 ATAATAAT
1666 GATGTATTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.51, C:0.04, G:0.11, T:0.33
Consensus pattern (18 bp):
ATAATAATAACAATGGTA
Found at i:2472 original size:77 final size:77
Alignment explanation
Indices: 2376--2529 Score: 308
Period size: 77 Copynumber: 2.0 Consensus size: 77
2366 ATCAGGTCCT
2376 TTTTGCACTTTTAATTAATTTTAAATTAGCCCAATGATTTCCATGGTTTTTCAATTTAATCCCTC
1 TTTTGCACTTTTAATTAATTTTAAATTAGCCCAATGATTTCCATGGTTTTTCAATTTAATCCCTC
2441 GACCTTTTAAAA
66 GACCTTTTAAAA
2453 TTTTGCACTTTTAATTAATTTTAAATTAGCCCAATGATTTCCATGGTTTTTCAATTTAATCCCTC
1 TTTTGCACTTTTAATTAATTTTAAATTAGCCCAATGATTTCCATGGTTTTTCAATTTAATCCCTC
2518 GACCTTTTAAAA
66 GACCTTTTAAAA
2530 AGCACCAGGA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.29, C:0.18, G:0.08, T:0.45
Consensus pattern (77 bp):
TTTTGCACTTTTAATTAATTTTAAATTAGCCCAATGATTTCCATGGTTTTTCAATTTAATCCCTC
GACCTTTTAAAA
Found at i:2880 original size:25 final size:25
Alignment explanation
Indices: 2797--2881 Score: 66
Period size: 25 Copynumber: 3.2 Consensus size: 25
2787 CAAAAATCTC
*
2797 ATTTTTGACCCCAAAACTTCCAAAA
1 ATTTTTGACCCCGAAACTTCCAAAA
* *
2822 A-ATCTGTACCCTCG-AACTTCCAAAAATCCA
1 ATTTTTG-ACCC-CGAAACTTCC--AAA---A
2852 ATTTTTGACCCCGAAACTTCCAAAA
1 ATTTTTGACCCCGAAACTTCCAAAA
2877 ATTTT
1 ATTTT
2882 ATTTTTACCC
Statistics
Matches: 46, Mismatches: 5, Indels: 18
0.67 0.07 0.26
Matches are distributed among these distances:
24 3 0.07
25 18 0.39
26 1 0.02
27 3 0.07
28 3 0.07
29 2 0.04
30 13 0.28
31 3 0.07
ACGTcount: A:0.36, C:0.28, G:0.06, T:0.29
Consensus pattern (25 bp):
ATTTTTGACCCCGAAACTTCCAAAA
Found at i:2915 original size:59 final size:59
Alignment explanation
Indices: 2750--3306 Score: 578
Period size: 59 Copynumber: 9.5 Consensus size: 59
2740 TGGAGATCCT
* * * * * *
2750 AAACATTCCAAAAATTTCAGTTTTACCCTCGAATTTCCAAAAATCTCATTTTTGACCCCA
1 AAAC-TTCCAAAAATTCCATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCG
* * * *
2810 AAACTTCCAAAAA----ATCTGTACCCTCGAACTTCCAAAAATCCAATTTTTGACCCCG
1 AAACTTCCAAAAATTCCATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCG
** * * **
2865 AAACTTCCAAAAATTTTATTTTTACCCCCGAACTTCCGAAAATCCCATTTTTTACGTCG
1 AAACTTCCAAAAATTCCATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCG
* ** * * *
2924 AAACTTCTAAAAATTCTGTTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGTCCTCG
1 AAACTTCCAAAAATTCCATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCG
* * *
2983 AAACTTCCAAAAATTCTATTTTTATCCCCGAACTTCCAAAAATCCCATTTTTAACCCCG
1 AAACTTCCAAAAATTCCATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCG
* * ** * * **
3042 AAACATCCAAAAATTCTAACTTTACCCCTGAATTTCCAAAAATCCCATTTTTGAATCCG
1 AAACTTCCAAAAATTCCATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCG
* *
3101 AACCTTCCAAAAATTCCATTTTTACCCCCGAACTTCCAAAAATCCCATTTTT-ACCTCG
1 AAACTTCCAAAAATTCCATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCG
* ** * *
3159 AACCTTCCAAAAATGT-CATTTTTA-CCCCGAACTTCCAAAAATGTCATTTTTGGCCCTG
1 AAACTTCCAAAAAT-TCCATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCG
* * * **
3217 AAACTTCCAAAAATTCCATCTTTGCCCTCGAACTTCC-AAAATCTCCATTTTTGACTTCG
1 AAACTTCCAAAAATTCCATTTTTACCCCCGAACTTCCAAAAATC-CCATTTTTGACCCCG
*
3276 AAAC-TCTC-AAAATTACC-CTTTTACCCCCGAA
1 AAACTTC-CAAAAATT-CCATTTTTACCCCCGAA
3307 TGTCTAAAAA
Statistics
Matches: 418, Mismatches: 68, Indels: 24
0.82 0.13 0.05
Matches are distributed among these distances:
55 48 0.11
57 26 0.06
58 70 0.17
59 270 0.65
60 4 0.01
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.32
Consensus pattern (59 bp):
AAACTTCCAAAAATTCCATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCG
Found at i:3277 original size:29 final size:29
Alignment explanation
Indices: 2755--3268 Score: 379
Period size: 29 Copynumber: 17.7 Consensus size: 29
2745 ATCCTAAACA
* * *
2755 TTCCAAAAAT-TTCAGTTTTACCCTCGAAT
1 TTCCAAAAATCTCCATTTTTACCC-CGAAC
*
2784 TTCCAAAAATCT-CATTTTTGACCCCAAAAC
1 TTCCAAAAATCTCCATTTTT-ACCCC-GAAC
* *
2814 TTCCAAAAA-----ATCTGTACCCTCGAAC
1 TTCCAAAAATCTCCATTTTTACCC-CGAAC
*
2839 TTCCAAAAATC-CAATTTTTGACCCCGAAAC
1 TTCCAAAAATCTCCATTTTT-ACCCCG-AAC
**
2869 TTCCAAAAAT-TTTATTTTTACCCCCGAAC
1 TTCCAAAAATCTCCATTTTTA-CCCCGAAC
* **
2898 TTCCGAAAATC-CCATTTTTTACGTCGAAAC
1 TTCCAAAAATCTCCA-TTTTTACCCCG-AAC
* **
2928 TTCTAAAAAT-TCTGTTTTTACCCTCGAAC
1 TTCCAAAAATCTCCATTTTTACCC-CGAAC
* *
2957 TTCCAAAAATC-CCATTTTTGTCCTCGAAAC
1 TTCCAAAAATCTCCATTTTT-ACCCCG-AAC
*
2987 TTCCAAAAAT-TCTATTTTTATCCCCGAAC
1 TTCCAAAAATCTCCATTTTTA-CCCCGAAC
3016 TTCCAAAAATC-CCATTTTTAACCCCGAAAC
1 TTCCAAAAATCTCCATTTTT-ACCCCG-AAC
* * ** *
3046 ATCCAAAAAT-TCTAACTTTACCCCTGAAT
1 TTCCAAAAATCTCCATTTTTACCCC-GAAC
**
3075 TTCCAAAAATC-CCATTTTTGAATCCGAACC
1 TTCCAAAAATCTCCATTTTT-ACCCCGAA-C
3105 TTCCAAAAAT-TCCATTTTTACCCCCGAAC
1 TTCCAAAAATCTCCATTTTTA-CCCCGAAC
*
3134 TTCCAAAAATC-CCATTTTTACCTCGAACC
1 TTCCAAAAATCTCCATTTTTACCCCGAA-C
*
3163 TTCCAAAAATGT-CATTTTTACCCCGAAC
1 TTCCAAAAATCTCCATTTTTACCCCGAAC
* * *
3191 TTCCAAAAATGT-CATTTTTGGCCCTGAAAC
1 TTCCAAAAATCTCCATTTTT-ACCCCG-AAC
* *
3221 TTCCAAAAAT-TCCATCTTTGCCCTCGAAC
1 TTCCAAAAATCTCCATTTTTACCC-CGAAC
3250 TTCC-AAAATCTCCATTTTT
1 TTCCAAAAATCTCCATTTTT
3269 GACTTCGAAA
Statistics
Matches: 393, Mismatches: 52, Indels: 80
0.75 0.10 0.15
Matches are distributed among these distances:
25 16 0.04
26 5 0.01
28 31 0.08
29 186 0.47
30 155 0.39
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.33
Consensus pattern (29 bp):
TTCCAAAAATCTCCATTTTTACCCCGAAC
Found at i:15437 original size:206 final size:206
Alignment explanation
Indices: 15067--15740 Score: 780
Period size: 206 Copynumber: 3.3 Consensus size: 206
15057 GACCATCCAC
* * * *
15067 AAACAA-CGATGCGGTCATCTTTCTGATGAGATACTGAGAAGAAGACCAAATCAATGAAACAAGG
1 AAACAAGCGATGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATC-A--AAACCACG
* * * *
15131 CTCAAAGCGAGCAAATCTTCGAACCCCAGCTT-CTGATGAGATATTGAGAAGCGGGTTGAAGCAA
63 CTCAATGCGAGCAAATCTTCGAAACCCAGCTTCCTGATGAGATACTGAGAAGCGGGTTGAAGTAA
** * * *
15195 TAAAACAGTTAGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCTTAAGGAGATAC
128 TAAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCATCTTCTTGATGAGATAC
15260 AGAGAAGCGGATTG
193 AGAGAAGCGGATTG
* * *
15274 AAACAAGCGATGCAATCATCTTCCTGATGAGATACTGAGAAGAATACCAAATCAAATCCACGCTC
1 AAACAAGCGATGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAAACCACGCTC
* * * * * * *
15339 GATGTGAGCAAATCTTCGAATCCTAGCTTCCTGATGAGACACCGAGAAGCAGGTTGAAGTAATAA
66 AATGCGAGCAAATCTTCGAAACCCAGCTTCCTGATGAGATACTGAGAAGCGGGTTGAAGTAATAA
* *
15404 AATGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATACAGA
131 AATGGTTAGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCATCTTCTTGATGAGATACAGA
* **
15469 GAAACAAATTG
196 GAAGCGGATTG
* ** * * * * *
15480 AAACAAACGACACAGTCATCTTCCTAATGAGATACTAAGAAGAAGACCAAATCAAACCCATGCTT
1 AAACAAGCGATGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAAACCACGCTC
* *
15545 AATGCGAGCAAATCTTC-AAACCCCGACTTCCTAATGAGATACTGAGAAGCGGGTCT-AAGTAAT
66 AATGCGAGCAAATCTTCGAAACCCAG-CTTCCTGATGAGATACTGAGAAGCGGGT-TGAAGTAAT
* * * * *
15608 AAAGTGGTTAGCTTCCTGATGAGATACGGAGAAGTAAACCAAATCCATCTTCTTGATGAGACACA
129 AAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCATCTTCTTGATGAGATACA
* * * *
15673 TAAAAGTGGATTC
194 GAGAAGCGGATTG
* ** * * * * *
15686 AAACAAGTGATGGGGTCATCCTCCTGATGAGACACTGAGAAAAAGGCCAAGTCAA
1 AAACAAGCGATGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAA
15741 TGAAACCAGA
Statistics
Matches: 390, Mismatches: 73, Indels: 9
0.83 0.15 0.02
Matches are distributed among these distances:
205 37 0.09
206 303 0.78
207 8 0.02
208 42 0.11
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.22
Consensus pattern (206 bp):
AAACAAGCGATGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAAACCACGCTC
AATGCGAGCAAATCTTCGAAACCCAGCTTCCTGATGAGATACTGAGAAGCGGGTTGAAGTAATAA
AATGGTTAGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCATCTTCTTGATGAGATACAGA
GAAGCGGATTG
Found at i:15477 original size:32 final size:34
Alignment explanation
Indices: 15413--15478 Score: 82
Period size: 37 Copynumber: 1.9 Consensus size: 34
15403 AAATGGTTAG
*
15413 CTTCCTGATGAGATACTGAGAAGTGGACCAAATTCAT
1 CTTCCTGATGAGATACAGAGAA---GACCAAATTCAT
15450 CTTCCTGATGAGATACAGAGAA-A-CAAATT
1 CTTCCTGATGAGATACAGAGAAGACCAAATT
15479 GAAACAAACG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
32 6 0.21
33 1 0.04
37 21 0.75
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (34 bp):
CTTCCTGATGAGATACAGAGAAGACCAAATTCAT
Found at i:16088 original size:17 final size:18
Alignment explanation
Indices: 16066--16163 Score: 65
Period size: 17 Copynumber: 5.3 Consensus size: 18
16056 CAAACTCATC
* *
16066 TTAAATTTATTTTAAGA-
1 TTAAATTTATTTAAAAAT
*
16083 TTAAATTTGTTTAAAAAT
1 TTAAATTTATTTAAAAAT
*
16101 TTAAATTTAAATTTAATTTAAGT
1 TTAAATTT--ATTTAA---AAAT
**
16124 TTAAATTTATTTTCAAAT
1 TTAAATTTATTTAAAAAT
* *
16142 TTAAAATTA-TTATAAAT
1 TTAAATTTATTTAAAAAT
16159 TTAAA
1 TTAAA
16164 ATAAATAAAG
Statistics
Matches: 64, Mismatches: 11, Indels: 12
0.74 0.13 0.14
Matches are distributed among these distances:
17 25 0.39
18 19 0.30
20 5 0.08
21 4 0.06
23 11 0.17
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (18 bp):
TTAAATTTATTTAAAAAT
Found at i:16108 original size:6 final size:6
Alignment explanation
Indices: 16097--16163 Score: 61
Period size: 6 Copynumber: 11.5 Consensus size: 6
16087 ATTTGTTTAA
* *
16097 AAATTT AAATTT AAATTT -AATTT AAGTTT AAATTT -ATTTT CAAATTT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT -AAATTT
*
16144 AAAATT --ATTAT AAATTT AAA
1 AAATTT AAATT-T AAATTT AAA
16164 ATAAATAAAG
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
4 2 0.04
5 10 0.20
6 30 0.61
7 7 0.14
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (6 bp):
AAATTT
Found at i:16111 original size:41 final size:41
Alignment explanation
Indices: 16066--16146 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
16056 CAAACTCATC
* *
16066 TTAAATTTATTTTAAGATTAAATTTGTTTAAAAATTTAAAT
1 TTAAATTTAATTTAAGATTAAATTTATTTAAAAATTTAAAT
* **
16107 TTAAATTTAATTTAAGTTTAAATTTATTTTCAAATTTAAA
1 TTAAATTTAATTTAAGATTAAATTTATTTAAAAATTTAAA
16147 ATTATTATAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (41 bp):
TTAAATTTAATTTAAGATTAAATTTATTTAAAAATTTAAAT
Found at i:16141 original size:29 final size:26
Alignment explanation
Indices: 16066--16145 Score: 79
Period size: 29 Copynumber: 2.8 Consensus size: 26
16056 CAAACTCATC
*
16066 TTAAATTTATTTTAAGATTAAATTTGT
1 TTAAATTTATTTTAA-ATTTAATTTGT
*
16093 TTAAAAATTTAAATTTAAATTTAATTTAAGT
1 TT--AAATTT-ATTTTAAATTTAATTT--GT
16124 TTAAATTTATTTTCAAATTTAA
1 TTAAATTTATTTT-AAATTTAA
16146 AATTATTATA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
27 2 0.05
28 4 0.09
29 28 0.64
30 6 0.14
31 4 0.09
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (26 bp):
TTAAATTTATTTTAAATTTAATTTGT
Found at i:16164 original size:17 final size:16
Alignment explanation
Indices: 16099--16165 Score: 71
Period size: 17 Copynumber: 3.9 Consensus size: 16
16089 TTGTTTAAAA
*
16099 ATTTAAATTTAAATTT
1 ATTTAAATTTAAAATT
* *
16115 AATTTAAGTTTAAATTT
1 -ATTTAAATTTAAAATT
16132 ATTTTCAAATTTAAAATT
1 A-TTT-AAATTTAAAATT
16150 ATTATAAATTTAAAAT
1 ATT-TAAATTTAAAAT
16166 AAATAAAGTT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
16 1 0.02
17 31 0.70
18 12 0.27
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (16 bp):
ATTTAAATTTAAAATT
Found at i:16866 original size:19 final size:18
Alignment explanation
Indices: 16825--16869 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
16815 AATAATATCT
*
16825 ATAATAATATCAATGGTA
1 ATAATAATAACAATGGTA
* *
16843 TTAATAATAAACAGTGGTA
1 ATAATAAT-AACAATGGTA
16862 ATAATAAT
1 ATAATAAT
16870 GATGTATTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.51, C:0.04, G:0.11, T:0.33
Consensus pattern (18 bp):
ATAATAATAACAATGGTA
Found at i:17926 original size:29 final size:29
Alignment explanation
Indices: 17892--18235 Score: 288
Period size: 29 Copynumber: 11.7 Consensus size: 29
17882 GTCCCTTAAC
*
17892 CTTCCAAAATTTCCATTTTTACCCTCGAA
1 CTTCCAAAAATTCCATTTTTACCCTCGAA
* * * *
17921 CTTCCAACAA-TCTTATTTTTGTCCC-CAAAA
1 CTTCCAAAAATTC-CATTTTT-ACCCTC-GAA
* * * *
17951 CTTCCAAAAAATCTATTTTT-TCCTTGAA
1 CTTCCAAAAATTCCATTTTTACCCTCGAA
* *
17979 ATTCCAAAAATCCCATTTTTGACCC-CGAA
1 CTTCCAAAAATTCCATTTTT-ACCCTCGAA
*
18008 CTTCCAAAAATTCCATTTTTACCCTCAAA
1 CTTCCAAAAATTCCATTTTTACCCTCGAA
* * * * *
18037 TTTCAAAAAATCCCATTTTTGACCCCCAAAA
1 CTTCCAAAAATTCCATTTTT-ACCCTC-GAA
* * *
18068 CTTCTAAAAATTCCATTTTTACCCCCAAA
1 CTTCCAAAAATTCCATTTTTACCCTCGAA
*
18097 CTTCCAAAAATCCCATTTTTGACCC-CGAA
1 CTTCCAAAAATTCCATTTTT-ACCCTCGAA
*
18126 CCTTCCAAAAATTCCATTTTTTCTCCT-GAA
1 -CTTCCAAAAATTCCATTTTTAC-CCTCGAA
* * **
18156 CTTCCAAAAATGCCATTTTTAACCTTAAA
1 CTTCCAAAAATTCCATTTTTACCCTCGAA
* *
18185 GCTTCCAAAAATTCCATCTTTGCCCTCGAA
1 -CTTCCAAAAATTCCATTTTTACCCTCGAA
18215 CTTCC-AAAATCTCCATTTTTA
1 CTTCCAAAAAT-TCCATTTTTA
18236 ACTTCGAAAC
Statistics
Matches: 256, Mismatches: 42, Indels: 34
0.77 0.13 0.10
Matches are distributed among these distances:
28 34 0.13
29 115 0.45
30 85 0.33
31 22 0.09
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.35
Consensus pattern (29 bp):
CTTCCAAAAATTCCATTTTTACCCTCGAA
Found at i:18164 original size:59 final size:59
Alignment explanation
Indices: 17892--18234 Score: 388
Period size: 59 Copynumber: 5.8 Consensus size: 59
17882 GTCCCTTAAC
* * ** *
17892 CTTCCAAAATTTCCATTTTTACCCTCGAACTTCCAACAATCTTATTTTTGTCCCCAAAA
1 CTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCCAAAA
* * * * * *
17951 CTTCCAAAAAATCTATTTTT-TCCTTGAAATTCCAAAAATCCCATTTTTGACCCC-GAA
1 CTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCCAAAA
* * *
18008 CTTCCAAAAATTCCATTTTTACCCTCAAATTTCAAAAAATCCCATTTTTGACCCCCAAAA
1 CTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGA-CCCCAAAA
* * * * *
18068 CTTCTAAAAATTCCATTTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCGAAC
1 CTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCCAAAA
* * * ** *
18127 CTTCCAAAAATTCCATTTTTTCTCCT-GAACTTCCAAAAATGCCATTTTTAACCTTAAAG
1 CTTCCAAAAATTCCATTTTTAC-CCTCGAACTTCCAAAAATCCCATTTTTGACCCCAAAA
* *
18186 CTTCCAAAAATTCCATCTTTGCCCTCGAACTTCC-AAAATCTCCATTTTT
1 CTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATC-CCATTTTT
18235 AACTTCGAAA
Statistics
Matches: 240, Mismatches: 38, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
57 20 0.08
58 60 0.25
59 109 0.45
60 51 0.21
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.35
Consensus pattern (59 bp):
CTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCCAAAA
Found at i:20406 original size:206 final size:206
Alignment explanation
Indices: 20036--20709 Score: 780
Period size: 206 Copynumber: 3.3 Consensus size: 206
20026 GACCATCCAC
* * * *
20036 AAACAA-CGATGCGGTCATCTTTCTGATGAGATACTGAGAAGAAGACCAAATCAATGAAACAAGG
1 AAACAAGCGATGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATC-A--AAACCACG
* * * *
20100 CTCAAAGCGAGCAAATCTTCGAACCCCAGCTT-CTGATGAGATATTGAGAAGCGGGTTGAAGCAA
63 CTCAATGCGAGCAAATCTTCGAAACCCAGCTTCCTGATGAGATACTGAGAAGCGGGTTGAAGTAA
** * * *
20164 TAAAACAGTTAGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCTTAAGGAGATAC
128 TAAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCATCTTCTTGATGAGATAC
20229 AGAGAAGCGGATTG
193 AGAGAAGCGGATTG
* * *
20243 AAACAAGCGATGCAATCATCTTCCTGATGAGATACTGAGAAGAATACCAAATCAAATCCACGCTC
1 AAACAAGCGATGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAAACCACGCTC
* * * * * * *
20308 GATGTGAGCAAATCTTCGAATCCTAGCTTCCTGATGAGACACCGAGAAGCAGGTTGAAGTAATAA
66 AATGCGAGCAAATCTTCGAAACCCAGCTTCCTGATGAGATACTGAGAAGCGGGTTGAAGTAATAA
* *
20373 AATGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATACAGA
131 AATGGTTAGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCATCTTCTTGATGAGATACAGA
* **
20438 GAAACAAATTG
196 GAAGCGGATTG
* ** * * * * *
20449 AAACAAACGACACAGTCATCTTCCTAATGAGATACTAAGAAGAAGACCAAATCAAACCCATGCTT
1 AAACAAGCGATGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAAACCACGCTC
* *
20514 AATGCGAGCAAATCTTC-AAACCCCGACTTCCTAATGAGATACTGAGAAGCGGGTCT-AAGTAAT
66 AATGCGAGCAAATCTTCGAAACCCAG-CTTCCTGATGAGATACTGAGAAGCGGGT-TGAAGTAAT
* * * * *
20577 AAAGTGGTTAGCTTCCTGATGAGATACGGAGAAGTAAACCAAATCCATCTTCTTGATGAGACACA
129 AAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCATCTTCTTGATGAGATACA
* * * *
20642 TAAAAGTGGATTC
194 GAGAAGCGGATTG
* ** * * * * *
20655 AAACAAGTGATGGGGTCATCCTCCTGATGAGACACTGAGAAAAAGGCCAAGTCAA
1 AAACAAGCGATGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAA
20710 TGAAACCAGA
Statistics
Matches: 390, Mismatches: 73, Indels: 9
0.83 0.15 0.02
Matches are distributed among these distances:
205 37 0.09
206 303 0.78
207 8 0.02
208 42 0.11
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.22
Consensus pattern (206 bp):
AAACAAGCGATGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAAACCACGCTC
AATGCGAGCAAATCTTCGAAACCCAGCTTCCTGATGAGATACTGAGAAGCGGGTTGAAGTAATAA
AATGGTTAGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCATCTTCTTGATGAGATACAGA
GAAGCGGATTG
Found at i:20446 original size:32 final size:34
Alignment explanation
Indices: 20382--20447 Score: 82
Period size: 37 Copynumber: 1.9 Consensus size: 34
20372 AAATGGTTAG
*
20382 CTTCCTGATGAGATACTGAGAAGTGGACCAAATTCAT
1 CTTCCTGATGAGATACAGAGAA---GACCAAATTCAT
20419 CTTCCTGATGAGATACAGAGAA-A-CAAATT
1 CTTCCTGATGAGATACAGAGAAGACCAAATT
20448 GAAACAAACG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
32 6 0.21
33 1 0.04
37 21 0.75
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (34 bp):
CTTCCTGATGAGATACAGAGAAGACCAAATTCAT
Found at i:21057 original size:17 final size:18
Alignment explanation
Indices: 21035--21132 Score: 65
Period size: 17 Copynumber: 5.3 Consensus size: 18
21025 CAAACTCATC
* *
21035 TTAAATTTATTTTAAGA-
1 TTAAATTTATTTAAAAAT
*
21052 TTAAATTTGTTTAAAAAT
1 TTAAATTTATTTAAAAAT
*
21070 TTAAATTTAAATTTAATTTAAGT
1 TTAAATTT--ATTTAA---AAAT
**
21093 TTAAATTTATTTTCAAAT
1 TTAAATTTATTTAAAAAT
* *
21111 TTAAAATTA-TTATAAAT
1 TTAAATTTATTTAAAAAT
21128 TTAAA
1 TTAAA
21133 ATAAATAAAG
Statistics
Matches: 64, Mismatches: 11, Indels: 12
0.74 0.13 0.14
Matches are distributed among these distances:
17 25 0.39
18 19 0.30
20 5 0.08
21 4 0.06
23 11 0.17
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (18 bp):
TTAAATTTATTTAAAAAT
Found at i:21077 original size:6 final size:6
Alignment explanation
Indices: 21066--21132 Score: 61
Period size: 6 Copynumber: 11.5 Consensus size: 6
21056 ATTTGTTTAA
* *
21066 AAATTT AAATTT AAATTT -AATTT AAGTTT AAATTT -ATTTT CAAATTT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT -AAATTT
*
21113 AAAATT --ATTAT AAATTT AAA
1 AAATTT AAATT-T AAATTT AAA
21133 ATAAATAAAG
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
4 2 0.04
5 10 0.20
6 30 0.61
7 7 0.14
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (6 bp):
AAATTT
Found at i:21080 original size:41 final size:41
Alignment explanation
Indices: 21035--21115 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
21025 CAAACTCATC
* *
21035 TTAAATTTATTTTAAGATTAAATTTGTTTAAAAATTTAAAT
1 TTAAATTTAATTTAAGATTAAATTTATTTAAAAATTTAAAT
* **
21076 TTAAATTTAATTTAAGTTTAAATTTATTTTCAAATTTAAA
1 TTAAATTTAATTTAAGATTAAATTTATTTAAAAATTTAAA
21116 ATTATTATAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (41 bp):
TTAAATTTAATTTAAGATTAAATTTATTTAAAAATTTAAAT
Found at i:21110 original size:29 final size:26
Alignment explanation
Indices: 21035--21114 Score: 79
Period size: 29 Copynumber: 2.8 Consensus size: 26
21025 CAAACTCATC
*
21035 TTAAATTTATTTTAAGATTAAATTTGT
1 TTAAATTTATTTTAA-ATTTAATTTGT
*
21062 TTAAAAATTTAAATTTAAATTTAATTTAAGT
1 TT--AAATTT-ATTTTAAATTTAATTT--GT
21093 TTAAATTTATTTTCAAATTTAA
1 TTAAATTTATTTT-AAATTTAA
21115 AATTATTATA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
27 2 0.05
28 4 0.09
29 28 0.64
30 6 0.14
31 4 0.09
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (26 bp):
TTAAATTTATTTTAAATTTAATTTGT
Found at i:21133 original size:17 final size:16
Alignment explanation
Indices: 21068--21134 Score: 71
Period size: 17 Copynumber: 3.9 Consensus size: 16
21058 TTGTTTAAAA
*
21068 ATTTAAATTTAAATTT
1 ATTTAAATTTAAAATT
* *
21084 AATTTAAGTTTAAATTT
1 -ATTTAAATTTAAAATT
21101 ATTTTCAAATTTAAAATT
1 A-TTT-AAATTTAAAATT
21119 ATTATAAATTTAAAAT
1 ATT-TAAATTTAAAAT
21135 AAATAAAGTT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
16 1 0.02
17 31 0.70
18 12 0.27
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (16 bp):
ATTTAAATTTAAAATT
Found at i:21835 original size:19 final size:18
Alignment explanation
Indices: 21794--21838 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
21784 AATAATATCT
*
21794 ATAATAATATCAATGGTA
1 ATAATAATAACAATGGTA
* *
21812 TTAATAATAAACAGTGGTA
1 ATAATAAT-AACAATGGTA
21831 ATAATAAT
1 ATAATAAT
21839 GATGTATTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.51, C:0.04, G:0.11, T:0.33
Consensus pattern (18 bp):
ATAATAATAACAATGGTA
Found at i:22895 original size:29 final size:29
Alignment explanation
Indices: 22861--23204 Score: 288
Period size: 29 Copynumber: 11.7 Consensus size: 29
22851 GTCCCTTAAC
*
22861 CTTCCAAAATTTCCATTTTTACCCTCGAA
1 CTTCCAAAAATTCCATTTTTACCCTCGAA
* * * *
22890 CTTCCAACAA-TCTTATTTTTGTCCC-CAAAA
1 CTTCCAAAAATTC-CATTTTT-ACCCTC-GAA
* * * *
22920 CTTCCAAAAAATCTATTTTT-TCCTTGAA
1 CTTCCAAAAATTCCATTTTTACCCTCGAA
* *
22948 ATTCCAAAAATCCCATTTTTGACCC-CGAA
1 CTTCCAAAAATTCCATTTTT-ACCCTCGAA
*
22977 CTTCCAAAAATTCCATTTTTACCCTCAAA
1 CTTCCAAAAATTCCATTTTTACCCTCGAA
* * * * *
23006 TTTCAAAAAATCCCATTTTTGACCCCCAAAA
1 CTTCCAAAAATTCCATTTTT-ACCCTC-GAA
* * *
23037 CTTCTAAAAATTCCATTTTTACCCCCAAA
1 CTTCCAAAAATTCCATTTTTACCCTCGAA
*
23066 CTTCCAAAAATCCCATTTTTGACCC-CGAA
1 CTTCCAAAAATTCCATTTTT-ACCCTCGAA
*
23095 CCTTCCAAAAATTCCATTTTTTCTCCT-GAA
1 -CTTCCAAAAATTCCATTTTTAC-CCTCGAA
* * **
23125 CTTCCAAAAATGCCATTTTTAACCTTAAA
1 CTTCCAAAAATTCCATTTTTACCCTCGAA
* *
23154 GCTTCCAAAAATTCCATCTTTGCCCTCGAA
1 -CTTCCAAAAATTCCATTTTTACCCTCGAA
23184 CTTCC-AAAATCTCCATTTTTA
1 CTTCCAAAAAT-TCCATTTTTA
23205 ACTTCGAAAC
Statistics
Matches: 256, Mismatches: 42, Indels: 34
0.77 0.13 0.10
Matches are distributed among these distances:
28 34 0.13
29 115 0.45
30 85 0.33
31 22 0.09
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.35
Consensus pattern (29 bp):
CTTCCAAAAATTCCATTTTTACCCTCGAA
Found at i:23133 original size:59 final size:59
Alignment explanation
Indices: 22861--23203 Score: 388
Period size: 59 Copynumber: 5.8 Consensus size: 59
22851 GTCCCTTAAC
* * ** *
22861 CTTCCAAAATTTCCATTTTTACCCTCGAACTTCCAACAATCTTATTTTTGTCCCCAAAA
1 CTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCCAAAA
* * * * * *
22920 CTTCCAAAAAATCTATTTTT-TCCTTGAAATTCCAAAAATCCCATTTTTGACCCC-GAA
1 CTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCCAAAA
* * *
22977 CTTCCAAAAATTCCATTTTTACCCTCAAATTTCAAAAAATCCCATTTTTGACCCCCAAAA
1 CTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGA-CCCCAAAA
* * * * *
23037 CTTCTAAAAATTCCATTTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCGAAC
1 CTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCCAAAA
* * * ** *
23096 CTTCCAAAAATTCCATTTTTTCTCCT-GAACTTCCAAAAATGCCATTTTTAACCTTAAAG
1 CTTCCAAAAATTCCATTTTTAC-CCTCGAACTTCCAAAAATCCCATTTTTGACCCCAAAA
* *
23155 CTTCCAAAAATTCCATCTTTGCCCTCGAACTTCC-AAAATCTCCATTTTT
1 CTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATC-CCATTTTT
23204 AACTTCGAAA
Statistics
Matches: 240, Mismatches: 38, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
57 20 0.08
58 60 0.25
59 109 0.45
60 51 0.21
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.35
Consensus pattern (59 bp):
CTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCCAAAA
Found at i:25247 original size:281 final size:279
Alignment explanation
Indices: 24160--30089 Score: 5560
Period size: 282 Copynumber: 21.1 Consensus size: 279
24150 GTGGTTTTGA
* * *
24160 CAAAGAATGCCACGTGTCAGAATCCAAAGAAACAAATATTACTTTAGCTTAAATATTAAGAATAG
1 CAAA-AATGCCGCGTGTCAGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAG
* *
24225 TCCTTGTACTTGTTGATTTGTGTGGATTTGGTTCCACTATTTTTATTTACTCGTAGCATTCAAAT
65 TCCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAAT
** *
24290 TGGTGTCTTAACTTTGAGAAAAAAAAAAGAAAATTGATGAAATCAACGAAGAATCTCCTTA-CCA
130 TGGCCTCTTAACTTTGAG--AAAAAAAA-AAAATTGATGAAATCAACGAAGAATCTCC-CAGCCA
* ** * * * **
24354 AATACAAGCAGCTCAGTCACATGAAATTATA-TTGAAATGGTCGCGTTAGATGGCTGTTTTAGGA
191 AATACAAGCAGCTCAGTCACATGCAATTA-ACTTGAAACCGCCGCGTAAGATGGCAGTTTTAAAA
*
24418 TACAAA-AGAATTTATTATTTTTTATAT
255 TA-AAAGAGAAATTA-T-TTTTTTATAT
* ** * * ** * * * *
24445 TAAAAATGTTGCGTGTCAGAGTCGAGTGAAACAAATATTATTCTAGGTTTAATTTTAAGAATATT
1 CAAAAATGCCGCGTGTCAGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAGT
* * * * ** *
24510 CCTTTTACTTATTGATTTGGGCGGATTTGCTCCCTTTATTTTTATTTACTCGTAGAATTCAAATT
66 CCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAATT
* * * ** * * *
24575 GGCCTCTTAAGTATGAGAAAACAAACATTATTGATGAAATCAACGGAGAATCTGCCTA-CAAAAT
131 GGCCTCTTAACTTTGAGAAAA-AAAAAAAATTGATGAAATCAACGAAGAATCT-CCCAGCCAAAT
* * * ** * * * *
24639 ACAAGCAACTCTGTCTCATGCAATTATTTTAAAACCGTCGCGTAAGATAGCAGTCTTAAAATAAA
194 ACAAGCAGCTCAGTCACATGCAATTAACTTGAAACCGCCGCGTAAGATGGCAGTTTTAAAATAAA
* *
24704 AAAGAATTTATTATTTGTTATAT
259 AGAGAAATTATT-TTT-TTATAT
* * * * * * *
24727 CAAAAACT-TCGTGTCTCAGAGT-CAAGTGAAACAAATATTATTTTGGGTTAAATTTTAAGAATA
1 CAAAAA-TGCCGCGTGTCAGAATCCAA-AGAAACAAATATTATTTTAGCTTAAATTTTAAGAATA
* * * * * * *
24790 GTCCTAGTATTTCTTGATTTGTGCAGATTTGGTCCCTC-ATTTTTTATTTACTCATAGCATTGAA
64 GTCCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTA-TTTTTATTTACTCGTAGCATTCAA
* * * * **
24854 ACTGGCCTTTTAAGTTTGAGAAAAAAAAAAAATAGATGAAATCAAAAAAGAATCT-CCACGCCAA
128 ATTGGCCTCTTAACTTTGAGAAAAAAAAAAAATTGATGAAATCAACGAAGAATCTCCCA-GCCAA
* * * * **
24918 ATACAAGTAGCTCTGTCACATGCATTTAACTTGAAAACATCGCGTAAGATGGCAGTTTTAAAATA
192 ATACAAGCAGCTCAGTCACATGCAATTAACTTGAAACCGCCGCGTAAGATGGCAGTTTTAAAATA
* *
24983 AAAGAGAAAATATTTTTCTATAT
257 AAAGAGAAATTATTTTTTTATAT
* * * * * *
25006 CAAGAACGCCGCATGTCAGAATCCAAAGAAACAACTATTACTTTAGTTTAAATTTTAAGAATAGT
1 CAAAAATGCCGCGTGTCAGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAGT
* *
25071 CCTTGTAGTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTATTCGTAGCATTCAAATT
66 CCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAATT
* * *
25136 GGCATCTTATCTTTGACAAAAAAAAAGAAAGTTGATGAAATCAACGAAGAATCTCCCAGCCAAAT
131 GGCCTCTTAACTTTGAGAAAAAAAAA-AAA-TTGATGAAATCAACGAAGAATCTCCCAGCCAAAT
* * * * * *
25201 ACAAGCAGCTCAATCATATGCATTTAACTTGAAACCACCACGTAAGATGGCAATTTTAAAATAAA
194 ACAAGCAGCTCAGTCACATGCAATTAACTTGAAACCGCCGCGTAAGATGGCAGTTTTAAAATAAA
*
25266 AGAGAAAATATTTTTTTATAT
259 AGAGAAATTATTTTTTTATAT
* * ***** * *
25287 CAAGAACGTAAATTGTCAAAATCCAAAGAAACAAATATTATTTTAGCTTAAATATTAAGAATAGT
1 CAAAAATGCCGCGTGTCAGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAGT
* * * *
25352 CCTTGTACTTATTGATTTGTGTGGATTTGGTACAACTATTTTTATTTACTCGTAGCATTCAAATT
66 CCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAATT
** * * *
25417 GGGGTCTTAACTTTGAGAAAAAAAAAAGAAAATTAATGAAATCAACAAAGAATCT-CCATACCAA
131 GGCCTCTTAACTTTGAG--AAAAAAAA-AAAATTGATGAAATCAACGAAGAATCTCCCA-GCCAA
* * * * * * **
25481 ATACAAACAGCTTAGTCACATGAAATTATA-TTGAAACGGCCGTGTTAGATGGCAGTTTTAGGAT
192 ATACAAGCAGCTCAGTCACATGCAATTA-ACTTGAAACCGCCGCGTAAGATGGCAGTTTTAAAAT
* *
25545 AAAAAAGAATTTATTATTTTTTATAT
256 AAAAGAGAAATTA-T-TTTTTTATAT
* ** * * *** * * * *
25571 TAAAAATGTGGCATGTCA-AAGTCGAGTTAAACAAATATTATTCTAGGTTTAATTCTAAGAATAG
1 CAAAAATGCCGCGTGTCAGAA-TCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAG
* * * * ** * *
25635 TCCTTTTACTTATTGATTTGGGCGGATTTGCTCCCTTTATTTTTATTTACTCGTAGAATTCAAAG
65 TCCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAAT
* * * *
25700 TGGCCTCTTAAGC-TTGAGAAAACAAAGAATATTGATGAAATCAATGAAGAATCTGCCTAG-CAA
130 TGGCCTCTTAA-CTTTGAGAAAA-AAAAAAAATTGATGAAATCAACGAAGAATCT-CCCAGCCAA
* * * * * * ** * *
25763 ATACAAGCAACTCTGTCACATGCAAATATCTTAAAACCGCCGTGTAAGACAGTAGTCTTAAAATA
192 ATACAAGCAGCTCAGTCACATGCAATTAACTTGAAACCGCCGCGTAAGATGGCAGTTTTAAAATA
* * *
25828 AAAAAGAATTTATTATTTGCTATAT
257 AAAGAGAAATTATT-TTT-TTATAT
* ** * * * * * * *
25853 GAAAAACACCGTGTGTTAGAGT-CAAGTGAAACAAATATT-TATTAGGTTAAATTATAAGAATAG
1 CAAAAATGCCGCGTGTCAGAATCCAA-AGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAG
* ** * * *
25916 TCCTTGTACTTCTTGATTTGTGCAAATTTGGTCCCACGATTTTTATTTACTCGTAGTATTGAAAT
65 TCCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAAT
* * * * ** *
25981 TGGCCTCTTAAGTTTGAGAAAAAAACAAAATAGATGAAATCAAAGAAGAATCTCCTTGCCAATTA
130 TGGCCTCTTAACTTTGAGAAAAAAAAAAAATTGATGAAATCAACGAAGAATCTCCCAGCCAAATA
** * * *
26046 CAAGCAGCTCCCTCACATGCATTTAACTTGAAACCGCTGCGTAAGACGGCAGTTTTAAAATAAAA
195 CAAGCAGCTCAGTCACATGCAATTAACTTGAAACCGCCGCGTAAGATGGCAGTTTTAAAATAAAA
26111 GAGAAA-TA-TTTTTTATAT
260 GAGAAATTATTTTTTTATAT
* *
26129 CAAGAACGCCGCGTGTCAGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAGT
1 CAAAAATGCCGCGTGTCAGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAGT
* * *
26194 CCTTGTACTTGATGATTTGTGCGGATTTGGTCCCATTATTTTTATTTACTCGCAGCATTCAAATT
66 CCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAATT
* * * *
26259 GGCATCTTAACTTTGAGAAAAAAAAAGAAAATTGATGAAATGAATGAAGAAACTCCCAGCCAAAT
131 GGCCTCTTAACTTTGAG-AAAAAAAA-AAAATTGATGAAATCAACGAAGAATCTCCCAGCCAAAT
* * * **
26324 ACAAGCAGCTCAGTCACATGAAATTATA-TTGAAA-CGACCGCATTAGATGGCAGTTTTAGGATA
194 ACAAGCAGCTCAGTCACATGCAATTA-ACTTGAAACCG-CCGCGTAAGATGGCAGTTTTAAAATA
* *
26387 AAAAAGAATTTATTAGTTTTTATAT
257 AAAGAGAAATTATT--TTTTTATAT
* * * *
26412 TAAAAACGACGCGTGTCA-AAGT-CAAGTGAAACAAATATTATTTTAGCTTAAATTTTAAGAATA
1 CAAAAATGCCGCGTGTCAGAA-TCCAA-AGAAACAAATATTATTTTAGCTTAAATTTTAAGAATA
* * * * * * *
26475 GTCCTTGTAATTCTTGATTTGCGCAGATTTGGTCCCTCGATTTTTATTTACTCGTAGCATTGAAA
64 GTCCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAA
* * * * * * *
26540 TTGGCCTATTAAGTTTTAGAAAAAAACAAAATAGATGAAATCAAAGAAGAATCTCCCTGCCAAAT
129 TTGGCCTCTTAACTTTGAGAAAAAAAAAAAATTGATGAAATCAACGAAGAATCTCCCAGCCAAAT
* * * * **
26605 ACAAGCAGCTCAATCACATGCATTTAACTTGAAATCACTACGTAAGATGGCAGTTTTAAAATAAA
194 ACAAGCAGCTCAGTCACATGCAATTAACTTGAAACCGCCGCGTAAGATGGCAGTTTTAAAATAAA
*
26670 AGAGAAAATATTTTTTTATAT
259 AGAGAAATTATTTTTTTATAT
* * * * *
26691 CAAGAATGCCACGTGTCAGAATCCAAAGAAACAAATATTACTTTAGCTTAAATATTAAGATTAGT
1 CAAAAATGCCGCGTGTCAGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAGT
* * *
26756 CCTTGTACTTGTTGATTTGTGTGGATTTGGTTCCAGTATTTTTATTTACTCGTAGCATTCAAATT
66 CCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAATT
**
26821 GGTGTCTTAACTTTGAGAAAAATAATAATAAAATTGATGAAATCAACGAAGAATCTCCCTA-CCA
131 GGCCTCTTAACTTTGAG-AAAA-AA-AA-AAAATTGATGAAATCAACGAAGAATCTCCC-AGCCA
* * * ** * * ***
26885 AATACAGGCAGCTCAGTCACATG-AAATAATATTGAAATGGCCGAGTTAGATGGCAGTTTTTGGA
191 AATACAAGCAGCTCAGTCACATGCAATTAA-CTTGAAACCGCCGCGTAAGATGGCAGTTTTAAAA
* *
26949 TAAAAAAGAATTTATTATTTTTTATAT
255 TAAAAGAGAAATTA-T-TTTTTTATAT
* ** * * ** ** * * * *
26976 TAAAAATGTTGTGTGTCAGAGTTGAGTGAAACAAATATTATTCTAGGTTTAATTTTAAGAATATT
1 CAAAAATGCCGCGTGTCAGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAGT
* * * * ** * ** *
27041 CCTTTTACTTATTGATTTGGGTGGATTTACTTCCTTTATTTTTATTTACTCGTAGAATTCAAATT
66 CCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAATT
* * ** * *
27106 GGCCTCTTAAGTTTGAGAAAACAAACATTATTGATGAAATCAACGGAGAATCTGCCTA-CCAAAT
131 GGCCTCTTAACTTTGAGAAAA-AAAAAAAATTGATGAAATCAACGAAGAATCT-CCCAGCCAAAT
* * ** * * *** *
27170 ACAAGCAACTCTGTCACATGCAATTATTTTAAAATCGCCGCGTAAGACAACAGTCTTAAAATAAA
194 ACAAGCAGCTCAGTCACATGCAATTAACTTGAAACCGCCGCGTAAGATGGCAGTTTTAAAATAAA
* * *
27235 AAAGCATTTATTATTTGTTATAT
259 AGAGAAATTATT-TTT-TTATAT
* * * * * *
27258 CAAAAATGCCGTGTGTAAGAGT--AAAGTGAAACAAATATTTTTTTAGGTTAAATTCTAAGAATA
1 CAAAAATGCCGCGTGTCAGAATCCAAA--GAAACAAATATTATTTTAGCTTAAATTTTAAGAATA
* * * * * * * *
27321 GTCCTTGTACTTCTTGATTTGTGCAGATTTGGTCCCTCGATTTTTATTTTCTCGTAGTAATGAAA
64 GTCCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAA
* * * * * ** *
27386 TTGGCCTTTTAAGTTTGAGAAAAAAACAAAATAGATGAAATCAAAGAAGAATCTCCTTGCCAATT
129 TTGGCCTCTTAACTTTGAGAAAAAAAAAAAATTGATGAAATCAACGAAGAATCTCCCAGCCAAAT
* ** * * * *
27451 ACAAGTAGCTTTGTCACAT-AAATTTAACTCGAAATCGCCGCGTAAGATGGCAATTTTCAAAATA
194 ACAAGCAGCTCAGTCACATGCAA-TTAACTTGAAACCGCCGCGTAAGATGGCAGTTTT-AAAATA
* *
27515 AAAGAGAAAATA-CTTTTTATAT
257 AAAGAGAAATTATTTTTTTATAT
* * * *
27537 AAAAAATGTCACGTGTCAGAATCTAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAGT
1 CAAAAATGCCGCGTGTCAGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAGT
* *
27602 CCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCATTATTTTTTATTTACTCTTAGCATTCAAAT
66 CCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTA-TTTTTATTTACTCGTAGCATTCAAAT
* * * *
27667 CGGCATGTTAACTTTGAGAAAAAAAAAAGAAAATTGATGAAATCAACGAAGAATCTCCCTGCCAA
130 TGGCCTCTTAACTTTGAG--AAAAAAAA-AAAATTGATGAAATCAACGAAGAATCTCCCAGCCAA
* * * * * **
27732 ATACAAGTAGCTCAATCACATGAAATTATA-TTGAAA-CGACCGCATTAGATGGCAGTTTTAGGA
192 ATACAAGCAGCTCAGTCACATGCAATTA-ACTTGAAACCG-CCGCGTAAGATGGCAGTTTTAAAA
* *
27795 TAAAA-AGGAATTTATTAGTTTTTATTT
255 TAAAAGA-GAAATTATT--TTTTTATAT
* * *** * * * ** *
27822 TAAAAACGTTACATGTCAGAGTCGAGTGAAACAAATATTATTTCAGCTTAAATTTTAAGAATAGT
1 CAAAAATGCCGCGTGTCAGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAGT
* * * * * * * *
27887 CCTCGTACTTCTTGATTTGCGCAGATCTGGTCCCTCGATTTTTA--T--T--TA-CATTGAAATT
66 CCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAATT
** * * * * *
27945 GGCCTCTTAACTTTGAGAAAAAAACTAAATAGACGAAATCAAAGAAGAATCTCTCTGCCAAATAC
131 GGCCTCTTAACTTTGAGAAAAAAAAAAAATTGATGAAATCAACGAAGAATCTCCCAGCCAAATAC
* * ** *
28010 AAGCAGCTCCGTCACATGCATTTAACTTGAAACCAACGCGTAAGATGGCAGTCTTAAAATAAAAG
196 AAGCAGCTCAGTCACATGCAATTAACTTGAAACCGCCGCGTAAGATGGCAGTTTTAAAATAAAAG
* *
28075 AGAAAATGTTTTTTTATAT
261 AGAAATTATTTTTTTATAT
* * * * *
28094 CAAGAATGCAGTGTGTCAGAATCCAAAGAAACAAATATTACTTTAGCTTAAATTTTAAGAATTG-
1 CAAAAATGCCGCGTGTCAGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAGT
* * * * * *
28158 CCTTTGTACTTATTGACTTGTGTGGATTTGGTCCCACTATTTTTATTTACTTGTATCATTCAATT
66 CC-TTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAAT
* * * * *
28223 TGGCATCTTAACTTTGAG---AAAAAAAAATTGATGAAATCAAAGAACAATCGCCCTGCCAAATA
130 TGGCCTCTTAACTTTGAGAAAAAAAAAAAATTGATGAAATCAACGAAGAATCTCCCAGCCAAATA
* * * * * * ** ** *
28285 CAAGCAGCTCAGTCACATGAAAATATA-TTGAAACGGTCGCGTTAGTTGATAGTTTTAGGATCAA
195 CAAGCAGCTCAGTCACATGCAATTA-ACTTGAAACCGCCGCGTAAGATGGCAGTTTTAAAATAAA
*
28349 A-AGAATTTATTATTTTTTATAT
259 AGAGAAATTA-T-TTTTTTATAT
* ** * * ** *
28371 TAAAAATGTTGCGTGTCAGAGTCGAGTGAAACAAATATTATTTTAGCTTAAAATTT-AGAATAGT
1 CAAAAATGCCGCGTGTCAGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAGT
* * * * * * *
28435 TCTTGTACTTCTTGATTTGCGCAGATTTGGTCCCTC-ATATTTTATTTACTTGTAGCATTGAAAT
66 CCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTAT-TTTTATTTACTCGTAGCATTCAAAT
** * * *
28499 TGGCCTCTTATGTTTGAGAAAAAAAACAAAATAGATGAAATCAAAGAAGAATCTCCCTGCCAAAT
130 TGGCCTCTTAACTTTGAGAAAAAAAA-AAAATTGATGAAATCAACGAAGAATCTCCCAGCCAAAT
* * *
28564 ACAATCAGCTCCA-TCACATGCATTTAACTTGAAACCGCCGCGTAGGATGGCAGTTTTAAAATAA
194 ACAAGCAGCT-CAGTCACATGCAATTAACTTGAAACCGCCGCGTAAGATGGCAGTTTTAAAATAA
*
28628 AAGAGAAAATATTTTTTTATAT
258 AAGAGAAATTATTTTTTTATAT
* * * * * *
28650 -AAAGAACGCCACGTGTCAGAGTTCAAAGAAACAAATATTACTTTAGTTTAAATTTTAAGAATAG
1 CAAA-AATGCCGCGTGTCAGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAG
* * * *
28714 TCCTTGTACTCGTTGATTTGTTCAGTTTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAAT
65 TCCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAAT
* ** *
28779 TGGCGTCTTAACTTTGAG-AAAAAGGAAAATTGATGAAATCAACGAAGAATCTCCCTA-TCAAAT
130 TGGCCTCTTAACTTTGAGAAAAAAAAAAAATTGATGAAATCAACGAAGAATCTCCC-AGCCAAAT
* * * * *
28842 ACAAGCAGCTCAATAACATGCATTTAACTTGAAACCGCCACGTAAGATTGCAGTTTTAAAATAAA
194 ACAAGCAGCTCAGTCACATGCAATTAACTTGAAACCGCCGCGTAAGATGGCAGTTTTAAAATAAA
*
28907 AGAGAAATTATTTTTTAATAT
259 AGAGAAATTATTTTTTTATAT
* ** *
28928 CAAGAACACTGCGTGTCAGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAGT
1 CAAAAATGCCGCGTGTCAGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAGT
28993 CCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAATT
66 CCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAATT
** * *
29058 GGGGTCTTATCTTTGAG--AAAAAAAAAATTGATGAAATCAACGAAGAATCTTCCTA-CCAAATA
131 GGCCTCTTAACTTTGAGAAAAAAAAAAAATTGATGAAATCAACGAAGAATC-TCCCAGCCAAATA
* * ** * * * **
29120 CAAGCAGCTCAGTCACATGAAATTATA-TTAAAATTGCTC-CGTTAGATGACCGTTTTAGGATAA
195 CAAGCAGCTCAGTCACATGCAATTA-ACTTGAAACCGC-CGCGTAAGATGGCAGTTTTAAAATAA
* *
29183 AAAAGAATTTATTATTTTTTATAT
258 AAGAGAAATTA-T-TTTTTTATAT
* ** * * * ** * * ** *
29207 AAAAAATATCGCGTGTCTGAGTCGAGTGAAACAAATATTATTCTAGGTTTGATTCTAAGAATAGT
1 CAAAAATGCCGCGTGTCAGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAGT
* * * * * ** * * *
29272 CCTTTTACTTATCGATTTGGGCGGATTTGCTCCCTTTATTCTTATTTACTCATAGAATTCAAATT
66 CCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAATT
* * * * * *
29337 GACGTCTTAAGTTTGAGAAAACAAACAATATTGATGAAATCGACGAAGAATC-CACCTA-CCAAA
131 GGCCTCTTAACTTTGAGAAAA-AAAAAAAATTGATGAAATCAACGAAGAATCTC-CC-AGCCAAA
* * * * ** *
29400 TACAAGCAGCTCTGTCACATGCAATTATCTTAAAACCGCCGCATAAGACAGCAGTCTTAAAATAA
193 TACAAGCAGCTCAGTCACATGCAATTAACTTGAAACCGCCGCGTAAGATGGCAGTTTTAAAATAA
*
29465 GAA-AGAATTTATTATTTGTTATAT
258 -AAGAGAAATTATT-TTT-TTATAT
* * * * * *
29489 CAAAAATTCCGTGTGTCAGAGT-GAAGTGAAACAAATATTATTTTAGCTTAAATTCTAAGAATAG
1 CAAAAATGCCGCGTGTCAGAATCCAA-AGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAG
* * * * * ** * * *
29553 CCCTAGTATTTCTTGATTTGCGCAAATTTGGTCCCTC-ATTTTTTATTTACCCGTAGCATTGAAA
65 TCCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTA-TTTTTATTTACTCGTAGCATTCAAA
* * ** * * *
29617 ATGGCCTCTTAAGTTTGAGAAAAAAACTAAATAGATGAAATCCAA-GAAGGATCTCCCTA-CCGA
129 TTGGCCTCTTAACTTTGAGAAAAAAAAAAAATTGATGAAAT-CAACGAAGAATCTCCC-AGCCAA
* * *
29680 ATACAAGCAGCTCCGTCACATGCATTTAACTTGAAACCGTCGCGTAAGATGGCAGTTTTAAAATA
192 ATACAAGCAGCTCAGTCACATGCAATTAACTTGAAACCGCCGCGTAAGATGGCAGTTTTAAAATA
* *
29745 AAACAGAAAATA-TTTTTTATAT
257 AAAGAGAAATTATTTTTTTATAT
* * * * * * * *
29767 CAAGAACGCCGTGTGTCAGAATCTAAAGAAACAAATATAACTTTAGTTTAAATATTAAGAATAGT
1 CAAAAATGCCGCGTGTCAGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAGT
* *
29832 CCTTGTACTTGTTGATTTGTGCGGATTTCGTCCCACTATTTTTATTTACCCGTAGCATTCAAATT
66 CCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAATT
* * *
29897 GGCGTCTTATCTTTGAGAAAAAAAATGGAAAATTGATGAAATCAACGAAGAATCTCCCTGCCAAA
131 GGCCTCTTAACTTTGAGAAAAAAAA---AAAATTGATGAAATCAACGAAGAATCTCCCAGCCAAA
* * * * *
29962 TTCAAGCAGCTCAATCACATGCATTTAACTTGAAACCGCAGCGGAAGATGGCAGTTTTAAAATAA
193 TACAAGCAGCTCAGTCACATGCAATTAACTTGAAACCGCCGCGTAAGATGGCAGTTTTAAAATAA
*
30027 AAGAGAAAATATTTTTTTATAT
258 AAGAGAAATTATTTTTTTATAT
* *
30049 CAAGAATGCTGCGTGTCAGAATCCAAAGAAACAAATATTAT
1 CAAAAATGCCGCGTGTCAGAATCCAAAGAAACAAATATTAT
Statistics
Matches: 4618, Mismatches: 888, Indels: 281
0.80 0.15 0.05
Matches are distributed among these distances:
271 2 0.00
272 90 0.02
273 1 0.00
274 90 0.02
275 16 0.00
276 191 0.04
277 273 0.06
278 392 0.08
279 658 0.14
280 326 0.07
281 818 0.18
282 947 0.21
283 327 0.07
284 261 0.06
285 226 0.05
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (279 bp):
CAAAAATGCCGCGTGTCAGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAATAGT
CCTTGTACTTGTTGATTTGTGCGGATTTGGTCCCACTATTTTTATTTACTCGTAGCATTCAAATT
GGCCTCTTAACTTTGAGAAAAAAAAAAAATTGATGAAATCAACGAAGAATCTCCCAGCCAAATAC
AAGCAGCTCAGTCACATGCAATTAACTTGAAACCGCCGCGTAAGATGGCAGTTTTAAAATAAAAG
AGAAATTATTTTTTTATAT
Done.