Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012496.1 Kokia drynarioides strain JFW-HI SEQ_127500, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 819

Length: 1366
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33


Found at i:987 original size:24 final size:26

Alignment explanation


    Indices: 960--1008  Score: 68
    Period size: 24  Copynumber: 2.0  Consensus size: 26

        950 AAGAGAAATG

                                       
        960 TAAATG-TGATATATGA-A-ATTATGA
          1 TAAATGATGA-ATATGAGAGATTATGA

                                     
        984 TAAATGATGAATATGAGAGATTATG
          1 TAAATGATGAATATGAGAGATTATG

       1009 CCCATGTAGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  24   12  0.55
  25    4  0.18
  26    6  0.27

ACGTcount: A:0.45, C:0.00, G:0.20, T:0.35


Consensus pattern (26 bp):   
TAAATGATGAATATGAGAGATTATGA

Found at i:1097 original size:23 final size:22

Alignment explanation


    Indices: 1071--1142  Score: 66
    Period size: 23  Copynumber: 3.5  Consensus size: 22

       1061 ACACTAGCAC

                                   
       1071 GCTCTCTGATTAGCACTTTGTGT
          1 GCTCTCTG-TTAGCACTTTGTGT

                  *               
       1094 G--CTCAG-TA---CTTTGTGT
          1 GCTCTCTGTTAGCACTTTGTGT

            *                      
       1110 ACTCTCTGTTTAGCACTTTGTGT
          1 GCTCTCTG-TTAGCACTTTGTGT

                      
       1133 GCTCTCTGTT
          1 GCTCTCTGTT

       1143 GCCCAGCACT


Statistics
Matches: 38,  Mismatches: 4, Indels: 15
        0.67            0.07        0.26

Matches are distributed among these distances:
  16    8  0.21
  18    4  0.11
  19    2  0.05
  20    2  0.05
  21    4  0.11
  22    2  0.05
  23   16  0.42

ACGTcount: A:0.11, C:0.22, G:0.21, T:0.46


Consensus pattern (22 bp):   
GCTCTCTGTTAGCACTTTGTGT
Done.