Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001250.1 Kokia drynarioides strain JFW-HI SEQ_112621, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8281
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--33  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

                                                             
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

         34 GGATAAGATG


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:6500 original size:20 final size:20

Alignment explanation


    Indices: 6463--6502  Score: 55
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       6453 AAATTTAAAA

                                
       6463 AATAATAATATTATTATATT
          1 AATAATAATATTATTATATT

                      *          
       6483 AATATATAATTTTA-TATATT
          1 AATA-ATAATATTATTATATT

       6503 TTTAAAGAGA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  20   10  0.56
  21    8  0.44

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (20 bp):   
AATAATAATATTATTATATT
Done.