Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012506.1 Kokia drynarioides strain JFW-HI SEQ_127511, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1942
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:236 original size:96 final size:96

Alignment explanation


    Indices: 94--274  Score: 233
    Period size: 96  Copynumber: 1.9  Consensus size: 96

         84 TTTTTAAATT

                                      *          *                    ***    
         94 GAGGCAATATTCCTTTATTTCGAGTTTTGAAAATTTGTGCCTTAACTCACTAGGTGCATTTTTTC
          1 GAGGCAATATTCCTTTATTTCGAGTTCTGAAAATTTGCGCCTTAACTCACTAGGTGCAACCTTTC

                                           
        159 TTTAAATCGAAATAATCGAACACCCTTAATC
         66 TTTAAATCGAAATAATCGAACACCCTTAATC

                     *                                        *              
        190 GAGGCAATGTTTCC-TTATCTTCGA-TTCTG-AAATATTGCGCCTTAACTTACTAGGTGCAACCT
          1 GAGGCAAT-ATTCCTTTAT-TTCGAGTTCTGAAAAT-TTGCGCCTTAACTCACTAGGTGCAACCT

                  *      *         
        252 TTCTTTGAATCGAGATAATCGAA
         63 TTCTTTAAATCGAAATAATCGAA

        275 TATCCTTTTC


Statistics
Matches: 73,  Mismatches: 9, Indels: 6
        0.83            0.10        0.07

Matches are distributed among these distances:
  95    4  0.05
  96   60  0.82
  97    9  0.12

ACGTcount: A:0.28, C:0.19, G:0.15, T:0.37


Consensus pattern (96 bp):   
GAGGCAATATTCCTTTATTTCGAGTTCTGAAAATTTGCGCCTTAACTCACTAGGTGCAACCTTTC
TTTAAATCGAAATAATCGAACACCCTTAATC
Done.