Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012508.1 Kokia drynarioides strain JFW-HI SEQ_127513, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7497
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32


Found at i:247 original size:15 final size:15

Alignment explanation


    Indices: 227--270  Score: 70
    Period size: 15  Copynumber: 2.9  Consensus size: 15

        217 AATACCCCTT

                           
        227 AGTGCCGCCACTTAG
          1 AGTGCCGCCACTTAG

                           
        242 AGTGCCGCCACTTAG
          1 AGTGCCGCCACTTAG

               *  *       
        257 AGTCCCTCCACTTA
          1 AGTGCCGCCACTTA

        271 ACTAAACATA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   27  1.00

ACGTcount: A:0.20, C:0.36, G:0.20, T:0.23


Consensus pattern (15 bp):   
AGTGCCGCCACTTAG
Done.