Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012512.1 Kokia drynarioides strain JFW-HI SEQ_127517, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4781
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.36

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1037 original size:14 final size:14

Alignment explanation


    Indices: 1018--1056  Score: 60
    Period size: 14  Copynumber: 2.8  Consensus size: 14

       1008 GATTTTCTAG

                          
       1018 TTGGGTTATGGTTA
          1 TTGGGTTATGGTTA

                    *     
       1032 TTGGGTTAGGGTTA
          1 TTGGGTTATGGTTA

            *          
       1046 CTGGGTTATGG
          1 TTGGGTTATGG

       1057 ATTTTTAATA


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  14   22  1.00

ACGTcount: A:0.13, C:0.03, G:0.41, T:0.44


Consensus pattern (14 bp):   
TTGGGTTATGGTTA
Done.