genome.fa.s12517.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012517.1 Kokia drynarioides strain JFW-HI SEQ_127522, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34842

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
611--843	30	8.0	30	69	15	121	33	25	3	37	1.71
693--994	29	10.3	30	69	19	140	31	28	2	37	1.72
686--994	117	2.6	118	82	7	362	32	27	2	36	1.72
686--995	59	5.3	58	79	9	269	32	27	2	37	1.72
1133--1181	15	3.4	15	78	21	68	20	22	8	48	1.75
1143--1193	13	3.8	13	79	20	61	19	19	7	52	1.70
1132--1193	28	2.2	28	100	0	124	19	20	8	51	1.72
1140--1203	12	4.6	14	71	21	55	20	20	7	51	1.71
6472--7456	39	25.3	39	70	12	340	24	30	20	25	1.98
6470--7456	78	12.7	78	81	3	1045	24	30	20	25	1.98
7925--7996	6	12.2	6	72	7	58	37	0	4	58	1.18
7909--8023	17	7.7	15	70	25	66	37	0	6	54	1.33
7914--7975	11	5.9	11	72	16	51	33	0	4	61	1.17
7925--8010	17	5.3	17	73	23	69	37	1	5	55	1.31
7892--7991	29	3.5	29	87	6	134	35	0	6	59	1.22
8046--8121	40	1.9	40	97	0	143	46	25	11	17	1.82
8678--8721	23	1.9	23	81	9	54	61	0	2	36	1.09
9598--9675	30	2.6	30	80	10	88	38	24	2	34	1.69
9668--10014	30	11.8	29	71	12	142	36	24	2	36	1.71
9814--10014	29	6.9	28	72	16	115	37	24	1	36	1.65
9829--10018	59	3.3	59	75	14	162	37	24	1	36	1.63
10433--10480	23	2.1	23	100	0	96	20	18	8	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20381--20412	14	2.4	14	94	5	57	25	6	0	68	1.12
25694--25731	17	2.2	17	95	0	67	23	2	0	73	0.95
27900--27945	25	1.9	23	86	8	65	36	4	6	52	1.47
31677--31752	40	1.9	40	94	0	134	46	26	10	17	1.80
33289--33470	57	3.1	57	74	14	174	39	28	2	30	1.69
33297--33795	29	17.2	28	72	9	222	35	26	4	33	1.77
33371--33597	59	3.9	58	79	9	196	37	28	2	32	1.71
33429--33597	89	1.9	89	84	4	225	37	27	3	31	1.74
33325--33789	88	5.3	87	73	9	292	35	27	4	32	1.78

Tables:   1

The End!