Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012518.1 Kokia drynarioides strain JFW-HI SEQ_127524, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2818
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33


Found at i:1480 original size:69 final size:69

Alignment explanation


    Indices: 1393--1532  Score: 262
    Period size: 69  Copynumber: 2.0  Consensus size: 69

       1383 AAAAGTGGCC

                                   *                  *                      
       1393 CAAGAGTATACCATGCTAGAGTATTACAAGCCTATTCACATATATACACAAAAGCATGAATAGAC
          1 CAAGAGTATACCATGCTAGAGTACTACAAGCCTATTCACATACATACACAAAAGCATGAATAGAC

                
       1458 TATA
         66 TATA

                                                                             
       1462 CAAGAGTATACCATGCTAGAGTACTACAAGCCTATTCACATACATACACAAAAGCATGAATAGAC
          1 CAAGAGTATACCATGCTAGAGTACTACAAGCCTATTCACATACATACACAAAAGCATGAATAGAC

                
       1527 TATA
         66 TATA

              
       1531 CA
          1 CA

       1533 TCCACAAGCT


Statistics
Matches: 69,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  69   69  1.00

ACGTcount: A:0.44, C:0.21, G:0.13, T:0.23


Consensus pattern (69 bp):   
CAAGAGTATACCATGCTAGAGTACTACAAGCCTATTCACATACATACACAAAAGCATGAATAGAC
TATA
Done.