genome.fa.s12524.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012524.1 Kokia drynarioides strain JFW-HI SEQ_127531, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136937

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439--469	15	2.1	15	93	0	53	41	6	29	22	1.78
6542--6866	43	7.7	43	84	2	378	26	27	12	34	1.91
6542--6866	129	2.6	126	85	3	426	26	27	12	34	1.91
16821--16867	24	2.0	24	91	0	76	46	4	2	46	1.34
18396--18435	21	2.0	19	90	9	62	45	0	10	45	1.37
18397--18435	10	3.9	10	83	9	53	43	0	10	46	1.37
23616--23655	18	2.2	18	95	0	71	10	2	10	77	1.08
24523--24581	16	3.7	16	79	0	73	44	10	20	25	1.83
33138--33235	39	2.5	39	81	6	110	42	15	15	26	1.86
33110--33258	39	3.8	38	76	5	102	40	17	16	25	1.89
35795--35819	13	1.9	13	100	0	50	76	0	0	24	0.80
36002--36090	21	4.4	20	76	11	67	30	10	3	56	1.49
37527--37675	76	2.0	76	81	2	174	32	20	20	26	1.97
39721--39764	4	12.0	4	77	18	51	75	0	0	25	0.81
39726--39764	7	5.4	7	96	3	69	74	0	0	25	0.82
41645--41980	99	3.5	97	75	12	339	24	21	17	36	1.94
41646--42075	93	4.5	94	74	14	319	25	21	17	35	1.95
41636--42073	192	2.3	192	86	3	580	24	21	18	36	1.95
45502--45555	21	2.6	21	82	5	65	33	24	12	29	1.92
50064--50340	141	2.0	141	96	0	509	24	25	15	34	1.95
51670--51743	21	3.5	21	92	3	114	31	22	16	29	1.96
53509--53562	20	2.6	21	80	16	60	42	11	0	46	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59200--59269	19	3.6	19	72	11	61	34	1	2	61	1.20
60771--61043	26	10.5	26	81	2	289	34	18	21	25	1.96
60770--61046	78	3.6	78	86	2	353	33	18	21	25	1.96
60787--61043	103	2.5	103	85	5	338	34	19	22	24	1.97
67868--68015	26	5.7	26	75	0	152	37	18	18	25	1.94
67846--68012	52	3.2	52	85	1	219	35	17	19	26	1.94
67868--68015	78	1.9	78	82	0	188	37	18	18	25	1.94
71234--71281	17	3.0	16	80	14	55	45	0	0	54	0.99
72709--72756	24	2.0	24	91	0	78	47	2	31	18	1.60
77343--77392	21	2.4	21	89	0	73	24	10	36	30	1.88
88277--88326	16	3.0	16	79	5	55	68	6	0	26	1.13
88434--88471	14	2.7	14	87	0	58	71	13	0	15	1.16
92199--92241	22	2.0	22	95	0	77	44	6	25	23	1.78
96056--96377	29	10.9	29	81	4	304	36	19	2	41	1.64
96030--96384	88	4.0	88	80	6	353	36	20	2	41	1.65
104586--105333	50	15.1	50	73	5	430	35	17	29	17	1.93
104586--105292	149	4.8	149	77	4	665	35	17	29	17	1.93
104586--105338	99	7.6	99	71	7	397	35	17	29	17	1.93
104586--105292	298	2.4	295	78	3	774	35	17	29	17	1.93
104586--105404	149	5.5	147	76	5	630	35	17	29	17	1.93
105104--105397	99	3.0	99	72	8	256	35	16	29	18	1.92
105862--105948	42	2.0	43	86	6	124	42	8	3	45	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106490--106542	22	2.4	22	78	9	63	62	0	0	37	0.96
107464--107789	30	11.0	30	80	7	256	35	23	1	38	1.66
107464--107765	87	3.4	88	80	8	285	36	24	1	37	1.65
107464--107769	58	5.2	58	80	8	262	35	23	1	38	1.65
110195--110249	24	2.2	24	87	3	74	63	7	9	20	1.47
110377--110491	60	1.9	60	89	1	178	32	2	24	40	1.69
110375--110501	30	4.3	30	84	3	159	32	3	26	37	1.72
111469--111510	14	2.8	15	85	10	59	71	0	4	23	1.05
111469--111511	22	2.0	21	95	4	77	72	0	4	23	1.04
119511--119593	40	2.1	40	100	0	166	30	20	21	27	1.98
121365--121398	13	2.6	13	85	0	50	55	0	0	44	0.99
122476--122582	29	3.6	30	88	5	155	33	29	2	33	1.72
128041--128154	30	3.8	30	78	2	122	34	4	21	40	1.73
128041--128155	60	1.9	60	85	3	160	33	4	21	40	1.73
128072--128166	30	3.2	30	77	14	106	36	3	22	37	1.70
129180--129210	16	1.9	16	93	0	53	77	0	3	19	0.90
131348--131388	21	1.9	22	90	5	66	29	7	12	51	1.66
136128--136541	59	7.0	58	84	6	337	29	2	31	35	1.72
136128--136588	89	5.2	87	75	13	365	30	3	31	34	1.74
136175--136588	118	3.5	116	82	8	414	30	3	31	35	1.73
136175--136547	148	2.5	148	86	4	497	29	2	31	35	1.73
136133--136582	207	2.2	205	88	5	656	30	3	31	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136175--136606	59	7.3	59	83	8	374	29	3	31	35	1.75
136195--136606	89	4.6	87	77	12	383	30	3	31	34	1.75
136133--136606	30	16.0	29	75	14	355	30	3	31	35	1.75

Tables:   1

The End!