Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012526.1 Kokia drynarioides strain JFW-HI SEQ_127533, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 623

Length: 1039
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31


Found at i:614 original size:29 final size:30

Alignment explanation


    Indices: 571--647  Score: 122
    Period size: 30  Copynumber: 2.6  Consensus size: 30

        561 GATGATTATT

                                          
        571 ATAATTTTAATAATTTTA-TATTTTAAAAA
          1 ATAATTTTAATAATTTTATTATTTTAAAAA

                                 *         
        600 ATAATTTTACA-AATTTTATTTTTTTAAAAA
          1 ATAATTTTA-ATAATTTTATTATTTTAAAAA

                              
        630 ATAATTTTAATAATTTTA
          1 ATAATTTTAATAATTTTA

        648 AAATCATTTG


Statistics
Matches: 44,  Mismatches: 1, Indels: 5
        0.88            0.02        0.10

Matches are distributed among these distances:
  29   17  0.39
  30   27  0.61

ACGTcount: A:0.45, C:0.01, G:0.00, T:0.53


Consensus pattern (30 bp):   
ATAATTTTAATAATTTTATTATTTTAAAAA

Done.