genome.fa.s1253.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01001253.1 Kokia drynarioides strain JFW-HI SEQ_112624, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64746

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2280--2323	3	14.7	3	100	0	88	68	0	0	31	0.90
2370--2436	23	2.9	22	80	10	71	73	1	7	17	1.14
4470--4681	93	2.3	93	79	6	207	26	23	14	34	1.94
5012--5525	49	10.5	48	77	6	424	21	27	15	35	1.94
5012--5532	98	5.3	97	83	5	500	21	27	16	35	1.94
4981--5525	147	3.7	147	81	3	519	21	27	16	35	1.94
6379--6418	7	5.4	7	88	11	62	0	15	0	85	0.61
6379--6418	16	2.7	15	92	7	64	0	15	0	85	0.61
8378--9095	49	14.7	50	72	11	371	24	26	13	35	1.93
8379--9101	98	7.4	96	76	9	473	24	26	13	35	1.93
8567--9102	147	3.6	146	78	8	455	24	25	13	36	1.92
8454--9102	49	13.3	49	74	7	372	24	25	14	35	1.93
9944--9982	20	1.9	20	89	5	60	5	12	5	76	1.11
15419--15461	6	6.8	6	85	15	52	0	18	0	81	0.69
15419--15459	13	3.2	13	90	10	66	0	17	0	82	0.66
15421--15462	19	2.1	20	91	8	68	0	21	0	78	0.75
18402--18437	15	2.4	15	90	0	54	66	5	13	13	1.41
22855--22886	15	2.1	16	94	5	57	18	25	12	43	1.85
27560--27764	109	1.9	109	82	2	259	38	17	11	32	1.85
30058--30230	93	1.9	93	80	4	206	24	24	19	31	1.98
31012--31062	26	2.0	26	84	0	66	29	21	17	31	1.96
31866--31896	16	1.9	16	93	0	53	22	16	0	61	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34004--34061	17	3.4	17	80	0	71	15	20	13	50	1.78
35081--35151	37	1.9	37	94	5	126	30	29	16	22	1.96
35160--35258	38	2.6	37	81	6	119	33	22	11	33	1.89
35097--35256	37	4.3	37	80	3	117	32	26	12	28	1.93
36341--36894	49	11.3	49	78	3	447	23	26	15	34	1.94
36479--36884	147	2.8	146	84	4	514	23	27	14	34	1.94
36342--36894	146	3.8	146	81	4	544	23	26	15	34	1.94
38668--38715	3	16.0	3	95	0	87	31	0	2	66	1.03
39247--39636	153	2.6	150	85	3	550	42	3	10	43	1.57
40679--40984	161	1.9	159	90	3	488	37	5	13	43	1.68
41345--41547	101	2.0	101	99	0	397	23	21	21	33	1.97
48821--49339	42	12.4	42	90	0	741	22	19	23	34	1.96
49319--49360	21	2.0	21	100	0	84	23	14	9	52	1.71
49235--49444	105	2.0	105	91	0	339	21	19	22	37	1.95
49277--49402	63	2.0	63	92	0	207	23	19	19	38	1.93
49193--49483	147	2.0	147	91	0	474	21	19	22	36	1.95
49151--49528	189	2.0	189	92	0	621	21	20	23	34	1.96
49340--49552	84	2.5	84	88	3	304	22	18	23	35	1.95
49109--49532	231	1.8	231	90	1	679	21	20	23	34	1.96
49340--49534	42	4.6	42	87	2	266	22	18	23	35	1.95
50002--50033	3	10.7	3	100	0	64	34	0	0	65	0.93
50472--50952	151	3.3	150	84	5	626	42	2	9	44	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50472--50981	152	3.4	147	80	8	545	42	2	10	44	1.53
53655--53693	21	1.9	21	89	5	62	25	17	15	41	1.89
56390--56424	18	2.0	17	94	5	61	31	22	34	11	1.90
56974--57073	47	2.1	47	94	0	173	27	10	20	43	1.83
58053--58110	29	2.0	29	86	3	80	29	10	27	32	1.90
58069--58125	29	2.0	29	86	3	80	26	8	31	33	1.87
58119--58390	30	9.2	30	66	17	97	35	0	26	37	1.62
58127--58423	29	10.1	29	76	8	287	35	1	26	36	1.65
58132--58423	59	4.9	58	90	2	399	34	1	26	36	1.65
59524--59582	11	5.3	11	76	17	50	57	1	5	35	1.31
60258--60288	15	2.1	15	93	0	53	22	12	25	38	1.90
60327--60399	17	4.4	16	84	5	92	52	4	0	43	1.20
60327--60405	34	2.4	33	84	2	104	50	5	0	44	1.24
60760--61008	130	1.9	130	86	1	354	18	19	25	36	1.94
60841--61454	218	2.8	218	89	0	924	21	20	22	36	1.95

Tables:   1

The End!