Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012532.1 Kokia drynarioides strain JFW-HI SEQ_127539, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3677
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32


Found at i:956 original size:18 final size:17

Alignment explanation


    Indices: 920--960  Score: 52
    Period size: 16  Copynumber: 2.5  Consensus size: 17

        910 AAGTAAAATT

                             
        920 ATAATTTTATCATTTTA
          1 ATAATTTTATCATTTTA

                              
        937 ATAA-TTTAT-ATCTTT-
          1 ATAATTTTATCAT-TTTA

                     
        952 ATAATTTTA
          1 ATAATTTTA

        961 AAGAATTAAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 5
        0.81            0.00        0.19

Matches are distributed among these distances:
  15    6  0.27
  16   12  0.55
  17    4  0.18

ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59


Consensus pattern (17 bp):   
ATAATTTTATCATTTTA
Done.