genome.fa.s12537.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012537.1 Kokia drynarioides strain JFW-HI SEQ_127546, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  145975

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2549--2596	25	1.9	25	82	0	60	29	6	12	52	1.63
16089--16148	31	1.9	31	83	6	77	43	1	5	50	1.34
23105--23135	14	2.2	14	100	0	62	0	41	0	58	0.98
25464--25683	36	6.1	36	91	2	352	26	13	27	32	1.93
43681--43725	23	2.0	23	86	0	63	64	2	6	26	1.30
46613--46690	30	2.5	30	78	10	77	37	2	14	46	1.58
48127--48174	25	1.9	25	100	0	96	43	4	6	45	1.48
54288--54362	26	2.9	25	74	24	66	53	1	0	45	1.08
54851--54885	10	3.4	10	88	4	52	74	2	0	22	0.95
60686--60776	6	15.3	6	68	19	57	43	1	3	51	1.25
60686--60769	17	4.8	17	80	2	96	42	1	3	52	1.26
60685--60769	34	2.4	34	84	3	107	43	1	3	51	1.26
60740--60784	24	1.9	23	90	4	72	48	0	0	51	1.00
61833--61912	30	2.7	30	76	0	79	23	25	40	11	1.88
62558--63012	30	15.5	30	77	9	361	34	27	3	35	1.72
62570--63012	59	7.5	59	80	8	391	34	27	3	34	1.73
67204--67267	33	1.9	33	93	0	110	31	32	7	28	1.85
70670--70709	21	2.0	21	90	5	64	52	0	0	47	1.00
71154--71217	21	3.0	21	74	2	56	45	35	1	17	1.58
73432--73490	28	2.1	29	81	15	70	54	1	0	44	1.10
75863--75926	31	2.1	31	94	2	112	42	25	7	25	1.81
79407--79437	10	2.9	11	90	9	55	64	6	9	19	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79891--79948	25	2.4	24	83	11	66	10	25	20	43	1.84
81522--81606	36	2.4	36	97	0	161	48	15	4	31	1.65
81548--81607	17	3.4	17	65	17	50	48	13	5	33	1.64
84879--84911	3	11.0	3	87	12	50	63	0	0	36	0.95
96462--96531	35	2.0	36	91	2	115	31	2	31	34	1.73
107819--107876	29	2.0	30	82	3	73	56	1	8	32	1.40
109886--109950	6	11.0	6	74	9	62	41	3	4	50	1.38
109877--109968	17	5.3	17	76	5	85	41	5	3	50	1.42
111764--111984	29	7.6	29	70	9	146	34	23	2	38	1.68
111768--111999	58	4.0	58	88	1	331	34	22	2	40	1.66
111798--112000	29	7.0	28	71	15	153	35	22	0	40	1.61
111768--111994	117	1.9	117	88	2	341	35	22	2	40	1.66
113328--113357	13	2.3	13	94	0	51	90	0	10	0	0.47
117609--117664	26	2.2	26	90	0	85	37	17	14	30	1.90
118446--118488	19	2.2	20	88	12	63	55	6	0	37	1.27
125922--125972	27	1.9	27	84	4	68	70	5	1	21	1.18
127251--127295	22	2.0	22	100	0	90	51	4	13	31	1.61
135688--135846	87	1.8	87	91	0	264	28	16	18	35	1.93
135696--135875	87	2.1	87	79	8	199	31	15	20	33	1.93
138268--138389	61	2.0	61	96	0	226	37	6	13	42	1.70
139497--139683	96	1.9	96	85	6	254	33	13	21	30	1.93
139995--140420	29	14.5	28	77	13	351	30	6	32	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139980--140103	61	2.0	60	89	4	187	29	4	36	29	1.78
140088--140363	59	4.7	59	92	1	396	29	6	32	30	1.84
139995--140420	59	7.2	56	85	7	351	30	6	32	31	1.82
141625--141663	7	5.9	7	90	3	55	46	0	0	53	1.00
141740--141781	18	2.3	18	91	4	66	47	0	4	47	1.23
142166--142204	7	5.9	7	90	3	55	46	0	0	53	1.00
142281--142322	18	2.3	19	91	4	68	47	2	4	45	1.36
141366--142449	541	2.0	541	97	0	2062	32	13	15	39	1.86
142897--142947	20	2.5	20	100	0	102	17	5	15	60	1.54
142973--143106	18	7.6	18	84	5	184	53	2	0	43	1.18
142972--143106	35	3.8	36	88	6	179	53	2	0	43	1.18
142971--143074	6	17.5	6	73	16	83	51	1	0	45	1.18
142973--143106	53	2.5	53	90	2	198	53	2	0	43	1.18
143457--143924	198	2.4	198	92	2	789	21	24	18	35	1.96
143865--143961	37	2.6	37	95	3	169	25	22	17	34	1.96
143675--144158	234	2.1	235	96	0	880	22	25	19	33	1.97
143902--144356	198	2.3	197	96	1	849	21	26	18	33	1.96
143469--144672	432	2.8	433	93	1	2027	21	24	19	34	1.96
144305--144393	37	2.4	37	96	3	162	26	23	19	30	1.98
145196--145256	27	2.2	27	85	2	77	50	8	22	18	1.73

Tables:   1

The End!