Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012538.1 Kokia drynarioides strain JFW-HI SEQ_127547, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5643
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33


Found at i:1640 original size:27 final size:27

Alignment explanation


    Indices: 1610--1677  Score: 100
    Period size: 27  Copynumber: 2.5  Consensus size: 27

       1600 ACATGACATC

                                  *   *
       1610 AATGAATAGCCTTTGTGGCAAATTCTG
          1 AATGAATAGCCTTTGTGGCAAACTCTA

                    *   *              
       1637 AATGAATAACCTCTGTGGCAAACTCTA
          1 AATGAATAGCCTTTGTGGCAAACTCTA

                          
       1664 AATGAATAGCCTTT
          1 AATGAATAGCCTTT

       1678 ATAGTAAATT


Statistics
Matches: 35,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  27   35  1.00

ACGTcount: A:0.34, C:0.18, G:0.18, T:0.31


Consensus pattern (27 bp):   
AATGAATAGCCTTTGTGGCAAACTCTA
Done.