Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012540.1 Kokia drynarioides strain JFW-HI SEQ_127549, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3363
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30


Found at i:2698 original size:88 final size:88

Alignment explanation


    Indices: 2549--2811  Score: 508
    Period size: 88  Copynumber: 3.0  Consensus size: 88

       2539 ATTTGAATGT

                               *                                             
       2549 CGAACAATATATTGACGATATGTACACGCTTGAATGTATGTTGCATATTTGGGGTAACAAGTTCT
          1 CGAACAATATATTGACGATGTGTACACGCTTGAATGTATGTTGCATATTTGGGGTAACAAGTTCT

                   *               
       2614 CTATATTAAGGGATGTATTGACA
         66 CTATATTGAGGGATGTATTGACA

                                                                             
       2637 CGAACAATATATTGACGATGTGTACACGCTTGAATGTATGTTGCATATTTGGGGTAACAAGTTCT
          1 CGAACAATATATTGACGATGTGTACACGCTTGAATGTATGTTGCATATTTGGGGTAACAAGTTCT

                                   
       2702 CTATATTGAGGGATGTATTGACA
         66 CTATATTGAGGGATGTATTGACA

                                                                             
       2725 CGAACAATATATTGACGATGTGTACACGCTTGAATGTATGTTGCATATTTGGGGTAACAAGTTCT
          1 CGAACAATATATTGACGATGTGTACACGCTTGAATGTATGTTGCATATTTGGGGTAACAAGTTCT

                                  
       2790 CTATATTGAGGGATGTATTGAC
         66 CTATATTGAGGGATGTATTGAC

       2812 GTGGGAAGTG


Statistics
Matches: 173,  Mismatches: 2, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  88  173  1.00

ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34


Consensus pattern (88 bp):   
CGAACAATATATTGACGATGTGTACACGCTTGAATGTATGTTGCATATTTGGGGTAACAAGTTCT
CTATATTGAGGGATGTATTGACA
Done.