Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012541.1 Kokia drynarioides strain JFW-HI SEQ_127550, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8750
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.33

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:448 original size:208 final size:208

Alignment explanation


    Indices: 84--655  Score: 1018
    Period size: 208  Copynumber: 2.8  Consensus size: 208

         74 ATCTTGTCCA

                                              *                              
         84 CATCGTTTTTAATTCGCTTCTCCGTATCTCATCATGAAGACGAATTTGGTACACTTCTCAGTATC
          1 CATCGTTTTTAATTCGCTTCTCCGTATCTCATCAAGAAGACGAATTTGGTACACTTCTCAGTATC

                                         *   *          *   *                
        149 TCATCAGGAAGCTAACCTTTTATTGCTTCAACCTGCTTCTCAGTGTCTTATCAGGAAGCTGGGGT
         66 TCATCAGGAAGCTAACCTTTTATTGCTTCGACCCGCTTCTCAGTATCTCATCAGGAAGCTGGGGT

             *            *                                                  
        214 TTGAAGATTTTGCTCGTTTCGAGCCTCTTTTGGGTTTGATTTGGTCTTCTTCTCAGTATCTTGTC
        131 TCGAAGATTTTGCTTGTTTCGAGCCTCTTTTGGGTTTGATTTGGTCTTCTTCTCAGTATCTTGTC

                         
        279 CGGAAGATGACCG
        196 CGGAAGATGACCG

                                                                             
        292 CATCGTTTTTAATTCGCTTCTCCGTATCTCATCAAGAAGACGAATTTGGTACACTTCTCAGTATC
          1 CATCGTTTTTAATTCGCTTCTCCGTATCTCATCAAGAAGACGAATTTGGTACACTTCTCAGTATC

                                    *                                        
        357 TCATCAGGAAGCTAACCTTTTATTTCTTCGACCCGCTTCTCAGTATCTCATCAGGAAGCTGGGGT
         66 TCATCAGGAAGCTAACCTTTTATTGCTTCGACCCGCTTCTCAGTATCTCATCAGGAAGCTGGGGT

                           *   *                                             
        422 TCGAAGATTTTGCTTATTTTGAGCCTCTTTTGGGTTTGATTTGGTCTTCTTCTCAGTATCTTGTC
        131 TCGAAGATTTTGCTTGTTTCGAGCCTCTTTTGGGTTTGATTTGGTCTTCTTCTCAGTATCTTGTC

                         
        487 CGGAAGATGACCG
        196 CGGAAGATGACCG

                                             **                              
        500 CATCGTTTTTAATTCGCTTCTCCGTATCTCATCCGGAAGACGAATTTGGTACACTTCTCAGTATC
          1 CATCGTTTTTAATTCGCTTCTCCGTATCTCATCAAGAAGACGAATTTGGTACACTTCTCAGTATC

                *                                                            
        565 TCATTAGGAAGCTAACCTTTTATTGCTTCGACCCGCTTCTCAGTATCTCATCAGGAAGCTGGGGT
         66 TCATCAGGAAGCTAACCTTTTATTGCTTCGACCCGCTTCTCAGTATCTCATCAGGAAGCTGGGGT

               *                      
        630 TCGTAGATTTTGCTTGTTTCGAGCCT
        131 TCGAAGATTTTGCTTGTTTCGAGCCT

        656 TATTTGGATC


Statistics
Matches: 347,  Mismatches: 17, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
 208  347  1.00

ACGTcount: A:0.20, C:0.23, G:0.20, T:0.38


Consensus pattern (208 bp):   
CATCGTTTTTAATTCGCTTCTCCGTATCTCATCAAGAAGACGAATTTGGTACACTTCTCAGTATC
TCATCAGGAAGCTAACCTTTTATTGCTTCGACCCGCTTCTCAGTATCTCATCAGGAAGCTGGGGT
TCGAAGATTTTGCTTGTTTCGAGCCTCTTTTGGGTTTGATTTGGTCTTCTTCTCAGTATCTTGTC
CGGAAGATGACCG

Found at i:7129 original size:32 final size:32

Alignment explanation


    Indices: 7092--7158  Score: 134
    Period size: 32  Copynumber: 2.1  Consensus size: 32

       7082 AGGATATTGT

                                            
       7092 AGGCATAGGCATCCTTCTCCCTTCCGAGATGA
          1 AGGCATAGGCATCCTTCTCCCTTCCGAGATGA

                                            
       7124 AGGCATAGGCATCCTTCTCCCTTCCGAGATGA
          1 AGGCATAGGCATCCTTCTCCCTTCCGAGATGA

               
       7156 AGG
          1 AGG

       7159 TTGCATTGAC


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   35  1.00

ACGTcount: A:0.22, C:0.30, G:0.24, T:0.24


Consensus pattern (32 bp):   
AGGCATAGGCATCCTTCTCCCTTCCGAGATGA
Done.