genome.fa.s12542.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012542.1 Kokia drynarioides strain JFW-HI SEQ_127551, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50877

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12901--12959	31	1.9	31	89	3	93	47	1	3	47	1.29
14431--14806	59	6.4	58	84	5	429	28	1	32	36	1.68
14429--14731	119	2.6	118	90	2	464	28	1	33	36	1.69
14432--14807	29	12.8	29	76	12	347	28	1	32	36	1.68
15949--15973	7	3.6	7	100	0	50	56	0	0	44	0.99
16572--16620	15	3.3	15	91	0	80	18	16	26	38	1.91
16668--16723	17	3.4	16	85	7	76	53	1	0	44	1.11
17578--17641	12	5.5	12	72	10	53	45	4	4	45	1.45
19531--19717	29	6.4	29	73	7	146	37	28	2	31	1.69
19532--19716	59	3.2	58	85	3	228	37	28	2	31	1.69
30898--30933	18	2.0	18	88	0	54	13	13	16	55	1.69
31918--32553	201	3.2	198	83	5	813	34	18	23	23	1.96
32941--33031	6	15.7	6	70	11	64	46	4	2	47	1.35
32927--32971	17	2.6	18	82	3	56	40	4	2	53	1.33
32927--33010	41	2.0	42	83	2	107	40	4	3	51	1.40
34206--34427	109	2.1	109	89	2	342	27	16	35	20	1.94
34924--35133	30	7.1	29	73	13	144	37	26	1	34	1.68
34936--35216	29	9.6	29	72	12	180	36	26	3	33	1.73
34936--35216	59	4.8	58	78	6	223	36	26	3	33	1.73
35084--35254	59	2.9	59	81	6	177	33	26	5	33	1.81
36903--36930	6	4.7	6	100	0	56	35	0	0	64	0.94
38418--38483	21	3.3	21	74	20	77	37	3	9	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38403--38483	39	2.1	39	97	0	153	37	2	8	51	1.46
38403--38462	18	3.2	18	74	21	68	38	1	6	53	1.37
38812--38906	35	2.7	35	83	0	100	45	2	2	50	1.25
38812--38906	17	5.5	17	81	5	91	45	2	2	50	1.25
40729--40931	30	6.8	30	80	6	216	33	27	5	32	1.81
40729--40931	59	3.4	59	79	6	230	33	27	5	32	1.81
41031--41093	28	2.2	28	91	2	99	36	33	7	22	1.83
41031--41103	28	2.6	28	86	6	85	32	31	8	27	1.86
41304--41495	96	2.0	95	84	8	246	29	20	13	36	1.91

Tables:   1

The End!