Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012545.1 Kokia drynarioides strain JFW-HI SEQ_127554, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 182398
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 28 characters in sequence are not A, C, G, or T
Found at i:355 original size:59 final size:59
Alignment explanation
Indices: 235--641 Score: 604
Period size: 59 Copynumber: 6.9 Consensus size: 59
225 GCACGGGGGC
* * *
235 AAAATGGTAATTTTGGGGAAGGTTCGGAGTCAAAAATGGGATTTTTGGAAGTTCGAGGGT
1 AAAATGGTAATTTT-TGGAAGGTTCGGGGTTAAAAATGGGATTTTTGGAAGTTCGAGGGT
* *
295 AAAATGGTAA-TTTTGGAAGGTTCGGGATAAAAAATGGGACTTTTTGGAAGTTCGAGGGT
1 AAAATGGTAATTTTTGGAAGGTTCGGGGTTAAAAATGGGA-TTTTTGGAAGTTCGAGGGT
** * *
354 AAAATGGTAATTTTTGGAAGGTTCGGTAATT-AAATTGGGATTTTTGGAAGTTCGGGGGT
1 AAAATGGTAATTTTTGGAAGGTTCGG-GGTTAAAAATGGGATTTTTGGAAGTTCGAGGGT
* *
413 AAAATGGTAATTTTTGGAAGGTTTGGGGTTAAAAATGGGATTTTTGGAAGTTCGGGGGT
1 AAAATGGTAATTTTTGGAAGGTTCGGGGTTAAAAATGGGATTTTTGGAAGTTCGAGGGT
* *
472 AAAATGGTAATTTTTGGAAGGTTCGGGGTTAAAAACGAGATTTTTGGAAGTTCGAGGGT
1 AAAATGGTAATTTTTGGAAGGTTCGGGGTTAAAAATGGGATTTTTGGAAGTTCGAGGGT
*
531 AAAATGG-AGATTTTTGGAAGGTTCGGGGTTAAAAATGGGATTTTTGGAAGTTCGGGGGT
1 AAAATGGTA-ATTTTTGGAAGGTTCGGGGTTAAAAATGGGATTTTTGGAAGTTCGAGGGT
* * *
590 AAAATTGTAACTTTTGGAAGGTTCGGGGTTAAAAATGGGATTTTTAGAAGTT
1 AAAATGGTAATTTTTGGAAGGTTCGGGGTTAAAAATGGGATTTTTGGAAGTT
642 TAGGGACCTC
Statistics
Matches: 319, Mismatches: 22, Indels: 13
0.90 0.06 0.04
Matches are distributed among these distances:
58 25 0.08
59 258 0.81
60 34 0.11
61 2 0.01
ACGTcount: A:0.29, C:0.04, G:0.33, T:0.33
Consensus pattern (59 bp):
AAAATGGTAATTTTTGGAAGGTTCGGGGTTAAAAATGGGATTTTTGGAAGTTCGAGGGT
Found at i:1683 original size:3 final size:3
Alignment explanation
Indices: 1677--1704 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
1667 TTTAAAACGA
1677 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1705 GTTTTTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:2393 original size:17 final size:17
Alignment explanation
Indices: 2371--2450 Score: 88
Period size: 17 Copynumber: 4.7 Consensus size: 17
2361 TGGACTTTTC
*
2371 TAAATTTAATTTTATAA
1 TAAATTTAATTTTAAAA
* *
2388 TAAATTTAAATTTCAAA
1 TAAATTTAATTTTAAAA
* *
2405 TAAACTTAAATTTAAAA
1 TAAATTTAATTTTAAAA
* *
2422 TAAACTTAAATTTAAAA
1 TAAATTTAATTTTAAAA
*
2439 TAAATTCAATTT
1 TAAATTTAATTT
2451 CCAACGGGTC
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 55 1.00
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (17 bp):
TAAATTTAATTTTAAAA
Found at i:2424 original size:34 final size:33
Alignment explanation
Indices: 2371--2450 Score: 97
Period size: 34 Copynumber: 2.4 Consensus size: 33
2361 TGGACTTTTC
* * * *
2371 TAAATTTAATTTTATAATAAATTTAAATTTCAAA
1 TAAA-TTAAATTTAAAATAAACTTAAATTTAAAA
2405 TAAACTTAAATTTAAAATAAACTTAAATTTAAAA
1 TAAA-TTAAATTTAAAATAAACTTAAATTTAAAA
*
2439 TAAATTCAATTT
1 TAAATTAAATTT
2451 CCAACGGGTC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
33 7 0.17
34 33 0.82
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (33 bp):
TAAATTAAATTTAAAATAAACTTAAATTTAAAA
Found at i:16104 original size:20 final size:20
Alignment explanation
Indices: 16079--16119 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
16069 CATGTGTAAT
16079 TGGGGAATATTACAAATAAA
1 TGGGGAATATTACAAATAAA
*
16099 TGGGGAATATTACACATAAA
1 TGGGGAATATTACAAATAAA
16119 T
1 T
16120 AACATGATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.46, C:0.07, G:0.20, T:0.27
Consensus pattern (20 bp):
TGGGGAATATTACAAATAAA
Found at i:20073 original size:21 final size:24
Alignment explanation
Indices: 20047--20095 Score: 68
Period size: 21 Copynumber: 2.2 Consensus size: 24
20037 AAAAGCTATC
20047 TACAAAATCA-ATC-TCT-AAGAT
1 TACAAAATCATATCTTCTAAAGAT
*
20068 TACAAAATTATATCTTCTAAAGAT
1 TACAAAATCATATCTTCTAAAGAT
20092 TACA
1 TACA
20096 TATCAAATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 9 0.38
22 3 0.12
23 3 0.12
24 9 0.38
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.33
Consensus pattern (24 bp):
TACAAAATCATATCTTCTAAAGAT
Found at i:22062 original size:10 final size:11
Alignment explanation
Indices: 22041--22071 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
22031 TTCTGACTTT
22041 GAAAAATCATA
1 GAAAAATCATA
22052 GAAAAAT-ATA
1 GAAAAATCATA
22062 GAAAAATCAT
1 GAAAAATCAT
22072 TATAGACTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.65, C:0.06, G:0.10, T:0.19
Consensus pattern (11 bp):
GAAAAATCATA
Found at i:22726 original size:22 final size:22
Alignment explanation
Indices: 22672--22726 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
22662 ATTCTAGCGC
*
22672 GCTTACTGTTCAGCACTATGTGT
1 GCTT-CTGTTTAGCACTATGTGT
*
22695 GCTTCTGTTTAGCACTGTGTGT
1 GCTTCTGTTTAGCACTATGTGT
22717 GCTTCTGTTT
1 GCTTCTGTTT
22727 CCCCAGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 26 0.87
23 4 0.13
ACGTcount: A:0.11, C:0.20, G:0.24, T:0.45
Consensus pattern (22 bp):
GCTTCTGTTTAGCACTATGTGT
Found at i:35340 original size:25 final size:23
Alignment explanation
Indices: 35298--35344 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 23
35288 TTCAATTAGG
35298 AAATTATTATTTAGATTTAATTC
1 AAATTATTATTTAGATTTAATTC
*
35321 AAATTATCTTTTTAGAATTTAATT
1 AAATTAT-TATTTAG-ATTTAATT
35345 TGGATCCAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 6 0.29
25 8 0.38
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.53
Consensus pattern (23 bp):
AAATTATTATTTAGATTTAATTC
Found at i:37509 original size:5 final size:5
Alignment explanation
Indices: 37488--37541 Score: 63
Period size: 5 Copynumber: 10.0 Consensus size: 5
37478 AAAAATTAGT
*
37488 TTTTAA TTTTAA TTTTA TTTTA TTTTA TCTTA TTTTA TTTTTAA TTTTA
1 TTTT-A TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA -TTTT-A TTTTA
37537 TTTTA
1 TTTTA
37542 ATTATGCACT
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
5 25 0.57
6 18 0.41
7 1 0.02
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:37522 original size:15 final size:16
Alignment explanation
Indices: 37488--37541 Score: 65
Period size: 17 Copynumber: 3.3 Consensus size: 16
37478 AAAAATTAGT
*
37488 TTTTAATTTTAATTTTA
1 TTTT-ATTTTAATCTTA
37505 TTTTATTTT-ATCTTA
1 TTTTATTTTAATCTTA
*
37520 TTTTATTTTTAATTTTA
1 TTTTA-TTTTAATCTTA
37537 TTTTA
1 TTTTA
37542 ATTATGCACT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 10 0.30
16 9 0.27
17 14 0.42
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTATTTTAATCTTA
Found at i:38488 original size:13 final size:13
Alignment explanation
Indices: 38470--38530 Score: 72
Period size: 14 Copynumber: 4.7 Consensus size: 13
38460 AATTAGTTAG
38470 AAAAAAAAA--GA
1 AAAAAAAAATTGA
*
38481 AAAAAAAAAGTCGA
1 AAAAAAAAA-TTGA
*
38495 AAAGAAAAATTGA
1 AAAAAAAAATTGA
38508 AAAAAAAAATTGA
1 AAAAAAAAATTGA
38521 GAAAAAAAAA
1 -AAAAAAAAA
38531 GGAAAAGAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
11 9 0.21
13 15 0.35
14 19 0.44
ACGTcount: A:0.79, C:0.02, G:0.11, T:0.08
Consensus pattern (13 bp):
AAAAAAAAATTGA
Found at i:38541 original size:13 final size:12
Alignment explanation
Indices: 38470--38543 Score: 60
Period size: 12 Copynumber: 5.8 Consensus size: 12
38460 AATTAGTTAG
38470 AAAAAAAAA-GA
1 AAAAAAAAAGGA
38481 AAAAAAAAAGTCGA
1 AAAAAAAAAG--GA
**
38495 AAAGAAAAATTGA
1 AAA-AAAAAAGGA
*
38508 AAAAAAAAATTGA
1 AAAAAAAAA-GGA
38521 GAAAAAAAAAGGA
1 -AAAAAAAAAGGA
*
38534 AAAGAAAAAG
1 AAAAAAAAAG
38544 ACAAAAGTAT
Statistics
Matches: 52, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
11 9 0.17
12 14 0.27
13 10 0.19
14 14 0.27
15 5 0.10
ACGTcount: A:0.77, C:0.01, G:0.15, T:0.07
Consensus pattern (12 bp):
AAAAAAAAAGGA
Found at i:38550 original size:13 final size:11
Alignment explanation
Indices: 38470--38549 Score: 52
Period size: 11 Copynumber: 6.5 Consensus size: 11
38460 AATTAGTTAG
38470 AAAAAAAAAGA
1 AAAAAAAAAGA
38481 AAAAAAAAAGTCGA
1 AAAAAAAAA---GA
*
38495 AAAGAAAAATTGA
1 AAA-AAAAA-AGA
38508 AAAAAAAAATTGA
1 AAAAAAAAA--GA
38521 GAAAAAAAAAGGA
1 -AAAAAAAAA-GA
*
38534 AAAGAAAAAGA
1 AAAAAAAAAGA
*
38545 CAAAA
1 AAAAA
38550 GTATGTTTGA
Statistics
Matches: 55, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
11 14 0.25
12 13 0.24
13 9 0.16
14 14 0.25
15 5 0.09
ACGTcount: A:0.78, C:0.03, G:0.14, T:0.06
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:43692 original size:23 final size:24
Alignment explanation
Indices: 43654--43707 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
43644 TTCGAAACTG
* *
43654 AAAATAACCTAAATTTTAAATTATT
1 AAAATAA-CTAAATTTAAAATGATT
43679 AAAATAA-TAAATTTAAAATGATT
1 AAAATAACTAAATTTAAAATGATT
*
43702 CAAATA
1 AAAATA
43708 TGAAATGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 19 0.73
25 7 0.27
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (24 bp):
AAAATAACTAAATTTAAAATGATT
Found at i:43727 original size:16 final size:16
Alignment explanation
Indices: 43687--43737 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
43677 TTAAAATAAT
* *
43687 AAATTTAAAATGATTC
1 AAATTTGAAATGATTA
*
43703 AAATATGAAATGATTA
1 AAATTTGAAATGATTA
*
43719 AAATTTGAATTGATATA
1 AAATTTGAAATGAT-TA
43736 AA
1 AA
43738 TTCGTAATGA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
16 25 0.86
17 4 0.14
ACGTcount: A:0.53, C:0.02, G:0.10, T:0.35
Consensus pattern (16 bp):
AAATTTGAAATGATTA
Found at i:45501 original size:33 final size:33
Alignment explanation
Indices: 45459--45524 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
45449 ATTTTTTTTT
45459 TGCAGCATGTAATTACTAATTAGTATGTTCTTA
1 TGCAGCATGTAATTACTAATTAGTATGTTCTTA
45492 TGCAGCATGTAATTACTAATTAGTATGTTCTTA
1 TGCAGCATGTAATTACTAATTAGTATGTTCTTA
45525 ATAACCAAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.42
Consensus pattern (33 bp):
TGCAGCATGTAATTACTAATTAGTATGTTCTTA
Found at i:46753 original size:42 final size:42
Alignment explanation
Indices: 46699--46826 Score: 256
Period size: 42 Copynumber: 3.0 Consensus size: 42
46689 CTTCATGCTC
46699 AACTCATTTCACATTTTGACCCACACTAATAGGTTTGTTCAT
1 AACTCATTTCACATTTTGACCCACACTAATAGGTTTGTTCAT
46741 AACTCATTTCACATTTTGACCCACACTAATAGGTTTGTTCAT
1 AACTCATTTCACATTTTGACCCACACTAATAGGTTTGTTCAT
46783 AACTCATTTCACATTTTGACCCACACTAATAGGTTTGTTCAT
1 AACTCATTTCACATTTTGACCCACACTAATAGGTTTGTTCAT
46825 AA
1 AA
46827 TTGTAAATGT
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 86 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (42 bp):
AACTCATTTCACATTTTGACCCACACTAATAGGTTTGTTCAT
Found at i:52470 original size:87 final size:87
Alignment explanation
Indices: 52346--52523 Score: 356
Period size: 87 Copynumber: 2.0 Consensus size: 87
52336 GGCGGGGGTC
52346 TTAACCCAGGGGCTAAGCTAAGAAATTATTTAGGAAGTCAAAAATAAATAAATAAATAAAATTTT
1 TTAACCCAGGGGCTAAGCTAAGAAATTATTTAGGAAGTCAAAAATAAATAAATAAATAAAATTTT
52411 AAAGTGTAATTTTATTATTATA
66 AAAGTGTAATTTTATTATTATA
52433 TTAACCCAGGGGCTAAGCTAAGAAATTATTTAGGAAGTCAAAAATAAATAAATAAATAAAATTTT
1 TTAACCCAGGGGCTAAGCTAAGAAATTATTTAGGAAGTCAAAAATAAATAAATAAATAAAATTTT
52498 AAAGTGTAATTTTATTATTATA
66 AAAGTGTAATTTTATTATTATA
52520 TTAA
1 TTAA
52524 TTTGTGATTT
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 91 1.00
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (87 bp):
TTAACCCAGGGGCTAAGCTAAGAAATTATTTAGGAAGTCAAAAATAAATAAATAAATAAAATTTT
AAAGTGTAATTTTATTATTATA
Found at i:52889 original size:20 final size:22
Alignment explanation
Indices: 52851--52892 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
52841 AAATTTATAA
52851 ATAATAAAAATAACCAAATTAAG
1 ATAATAAAAATAA-CAAATTAAG
52874 ATAATAAAAA-AA-AAATTAA
1 ATAATAAAAATAACAAATTAA
52893 ATCCACAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.37
22 2 0.11
23 10 0.53
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.21
Consensus pattern (22 bp):
ATAATAAAAATAACAAATTAAG
Found at i:54577 original size:12 final size:12
Alignment explanation
Indices: 54560--54589 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
54550 CAAAGGTATT
54560 GAGGGATAAATA
1 GAGGGATAAATA
*
54572 GAGGGATAAGTA
1 GAGGGATAAATA
54584 GAGGGA
1 GAGGGA
54590 AAGACCCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.43, T:0.13
Consensus pattern (12 bp):
GAGGGATAAATA
Found at i:73208 original size:25 final size:23
Alignment explanation
Indices: 73165--73210 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
73155 CCAACTAAGG
73165 AATTATTGTTTAGATTTAATTCT
1 AATTATTGTTTAGATTTAATTCT
*
73188 AATTATCTTTTTAGAATTTAATT
1 AATTAT-TGTTTAG-ATTTAATT
73211 TGGATCCATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (23 bp):
AATTATTGTTTAGATTTAATTCT
Found at i:73439 original size:23 final size:25
Alignment explanation
Indices: 73413--73458 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73403 CCAACTAATG
73413 AATTAT-TGTTTAG-ATTTAATTCT
1 AATTATCTGTTTAGAATTTAATTCT
*
73436 AATTATCTTTTTAGAATTTAATT
1 AATTATCTGTTTAGAATTTAATT
73459 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (25 bp):
AATTATCTGTTTAGAATTTAATTCT
Found at i:73511 original size:248 final size:248
Alignment explanation
Indices: 73073--73576 Score: 936
Period size: 248 Copynumber: 2.0 Consensus size: 248
73063 TATTTCTTAG
73073 GATTATTATTGTTATATTATTTATATTTATATTTAATTTTAATTTATCTTTTAGGCTTTATAATT
1 GATTATTATTGTTATATTATTTATATTTATATTTAATTTTAATTTATCTTTTAGGCTTTATAATT
73138 TAAAGTTTAATTTGGATCCAACTAAGGAATTATTGTTTAGATTTAATTCTAATTATCTTTTTAGA
66 TAAAGTTTAATTTGGATCCAACTAAGGAATTATTGTTTAGATTTAATTCTAATTATCTTTTTAGA
* *
73203 ATTTAATTTGGATCCATCTAGAGATTTTCGTGTATTATAAATAGGGGATAGAGTGATATGAATTA
131 ATTTAATTTGGATCCAACTAGAGACTTTCGTGTATTATAAATAGGGGATAGAGTGATATGAATTA
* *
73268 AGTACTTCCAATTTTCTATAAAATTTACCATTTTTCAAACTCTAATCGTCAGA
196 AATACTTCCAATTTTCTATAAAATTTACCATTTCTCAAACTCTAATCGTCAGA
73321 GATTATTATTGTTATATTATTTATATTTATATTTAATTTTAATTTATCTTTTAGGCTTTATAATT
1 GATTATTATTGTTATATTATTTATATTTATATTTAATTTTAATTTATCTTTTAGGCTTTATAATT
*
73386 TAAAGTTTAATTTGGATCCAACTAATGAATTATTGTTTAGATTTAATTCTAATTATCTTTTTAGA
66 TAAAGTTTAATTTGGATCCAACTAAGGAATTATTGTTTAGATTTAATTCTAATTATCTTTTTAGA
73451 ATTTAATTTGGATCCAACTAGAGACTTTCGTGTATTATAAATAGGGGATAGAGTGATATGAATTA
131 ATTTAATTTGGATCCAACTAGAGACTTTCGTGTATTATAAATAGGGGATAGAGTGATATGAATTA
* *
73516 AATACTTTCAATTTTCTATAAAATTTTCCATTTCTCAAACTCTAATCGTCAGA
196 AATACTTCCAATTTTCTATAAAATTTACCATTTCTCAAACTCTAATCGTCAGA
*
73569 TATTATTA
1 GATTATTA
73577 AAAAAAACAA
Statistics
Matches: 248, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
248 248 1.00
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.47
Consensus pattern (248 bp):
GATTATTATTGTTATATTATTTATATTTATATTTAATTTTAATTTATCTTTTAGGCTTTATAATT
TAAAGTTTAATTTGGATCCAACTAAGGAATTATTGTTTAGATTTAATTCTAATTATCTTTTTAGA
ATTTAATTTGGATCCAACTAGAGACTTTCGTGTATTATAAATAGGGGATAGAGTGATATGAATTA
AATACTTCCAATTTTCTATAAAATTTACCATTTCTCAAACTCTAATCGTCAGA
Found at i:74482 original size:12 final size:12
Alignment explanation
Indices: 74465--74526 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
74455 CAATTCACTT
74465 TTTAAATGAAAA
1 TTTAAATGAAAA
74477 TTTAAATGAAATAA
1 TTTAAATG-AA-AA
*
74491 TTT---TG-TAA
1 TTTAAATGAAAA
*
74499 CTTAAATGAAAA
1 TTTAAATGAAAA
*
74511 TTTAAATGAAAG
1 TTTAAATGAAAA
74523 TTTA
1 TTTA
74527 GTTAGTTCTC
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
8 4 0.10
11 4 0.10
12 24 0.62
13 2 0.05
14 5 0.13
ACGTcount: A:0.50, C:0.02, G:0.10, T:0.39
Consensus pattern (12 bp):
TTTAAATGAAAA
Found at i:97298 original size:108 final size:107
Alignment explanation
Indices: 97102--97306 Score: 270
Period size: 108 Copynumber: 1.9 Consensus size: 107
97092 AAAGTACTAC
** * * * *
97102 CAAAGTAGCAATGGCCACGATTGAGAGCCTATCAAAAGATCCCTCAAGTTGATGCGTGCAACCCA
1 CAAAGTAGCAATGGCCACGACCGAGAGCCCACCAAAAGATCCCTCAAGTTGACGCGCGCAACCCA
97167 TACGAACATGCCATCCGCATCCCACATGATTGATGACTGCTCA
66 TACGAACATGCCA-CCGCATCCCACATGATTGATGACTGCTCA
* *
97210 CAAAGTAGCAATGGCC-CGAGCCGAGATCCCACCAAAAGGTCCCTCAAGTTGACGCGCGCAACCC
1 CAAAGTAGCAATGGCCACGA-CCGAGAGCCCACCAAAAGATCCCTCAAGTTGACGCGCGCAACCC
* *
97274 GTACGAACATGCC-CCTCAATTCCCACATGATTG
65 ATACGAACATGCCACCGC-A-TCCCACATGATTG
97307 CTCTCATAGT
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
106 3 0.04
107 4 0.05
108 77 0.92
ACGTcount: A:0.30, C:0.32, G:0.20, T:0.18
Consensus pattern (107 bp):
CAAAGTAGCAATGGCCACGACCGAGAGCCCACCAAAAGATCCCTCAAGTTGACGCGCGCAACCCA
TACGAACATGCCACCGCATCCCACATGATTGATGACTGCTCA
Found at i:97856 original size:47 final size:47
Alignment explanation
Indices: 97747--97846 Score: 200
Period size: 47 Copynumber: 2.1 Consensus size: 47
97737 AAAAAGGGGC
97747 ACATTTGACCATTGTAGGGAGAATCTCGTGACCCATTTTCCACCCAA
1 ACATTTGACCATTGTAGGGAGAATCTCGTGACCCATTTTCCACCCAA
97794 ACATTTGACCATTGTAGGGAGAATCTCGTGACCCATTTTCCACCCAA
1 ACATTTGACCATTGTAGGGAGAATCTCGTGACCCATTTTCCACCCAA
97841 ACATTT
1 ACATTT
97847 TCGTCTTGTA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 53 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (47 bp):
ACATTTGACCATTGTAGGGAGAATCTCGTGACCCATTTTCCACCCAA
Found at i:100853 original size:2 final size:2
Alignment explanation
Indices: 100846--100883 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
100836 AGCTGACATA
* *
100846 AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
100884 GATTTGTTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (2 bp):
AT
Found at i:106931 original size:28 final size:28
Alignment explanation
Indices: 106885--106946 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
106875 AAGTCTACCC
* *
106885 ATATATTTTTTTTAATATTTAATAATTTT
1 ATATATTTTTTTT-ATATTGAAAAATTTT
106914 ATATATTTTTTATT-TATTGAAAAATTTT
1 ATATATTTTTT-TTATATTGAAAAATTTT
106942 ATATA
1 ATATA
106947 ATCATCTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
28 17 0.57
29 11 0.37
30 2 0.07
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (28 bp):
ATATATTTTTTTTATATTGAAAAATTTT
Found at i:109936 original size:23 final size:22
Alignment explanation
Indices: 109906--110004 Score: 92
Period size: 23 Copynumber: 4.4 Consensus size: 22
109896 AAGTACTTAA
109906 CAGTAAGCACACACAGTGCAAT
1 CAGTAAGCACACACAGTGCAAT
*
109928 CCAGTAAGCACACACGGTGCAAT
1 -CAGTAAGCACACACAGTGCAAT
* * * *
109951 CAGTAGGCGCACATAGCGCAAAT
1 CAGTAAGCACACACAGTGC-AAT
* *
109974 CAATAAGCACACGA-AGTGCGAAA
1 CAGTAAGCACAC-ACAGTGC-AAT
109997 CAGTAAGC
1 CAGTAAGC
110005 GCGCTAGCGT
Statistics
Matches: 61, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
22 14 0.23
23 46 0.75
24 1 0.02
ACGTcount: A:0.39, C:0.26, G:0.22, T:0.12
Consensus pattern (22 bp):
CAGTAAGCACACACAGTGCAAT
Found at i:112594 original size:45 final size:45
Alignment explanation
Indices: 112530--112623 Score: 188
Period size: 45 Copynumber: 2.1 Consensus size: 45
112520 GAACAATTAA
112530 AGGGATTGCCATTGGGAAAGGGCAGGTAGGTGAAACTAAGCATAT
1 AGGGATTGCCATTGGGAAAGGGCAGGTAGGTGAAACTAAGCATAT
112575 AGGGATTGCCATTGGGAAAGGGCAGGTAGGTGAAACTAAGCATAT
1 AGGGATTGCCATTGGGAAAGGGCAGGTAGGTGAAACTAAGCATAT
112620 AGGG
1 AGGG
112624 GAATAAGAGC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.33, C:0.11, G:0.37, T:0.19
Consensus pattern (45 bp):
AGGGATTGCCATTGGGAAAGGGCAGGTAGGTGAAACTAAGCATAT
Found at i:116272 original size:2 final size:2
Alignment explanation
Indices: 116265--116299 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
116255 GTGAAGCCAA
116265 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
116300 ATATATATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:116304 original size:2 final size:2
Alignment explanation
Indices: 116299--116323 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
116289 TCTCTCTCTC
116299 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
116324 GAAATATCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:123000 original size:42 final size:41
Alignment explanation
Indices: 122945--123072 Score: 121
Period size: 42 Copynumber: 3.0 Consensus size: 41
122935 GATTGAGCTT
* *
122945 CAGTATTCAGTTTGTCCCTCAAGAGCCTGGGTGATTGAAATG
1 CAGTA-TCGGTTTGTCCCTCAAGAGCCTGGGTGATTCAAATG
* * **
122987 CGGTATCTGGTTTGTCCTTGGAGAGCCTGGGTGATTCAAATG
1 CAGTATC-GGTTTGTCCCTCAAGAGCCTGGGTGATTCAAATG
** ** * *
123029 CAGTATCGGATTTGTCGTTGGAGAGCCTAGGTGGTTCAAATG
1 CAGTATCGG-TTTGTCCCTCAAGAGCCTGGGTGATTCAAATG
123071 CA
1 CA
123073 CCATTGGATT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
41 4 0.05
42 70 0.95
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.31
Consensus pattern (41 bp):
CAGTATCGGTTTGTCCCTCAAGAGCCTGGGTGATTCAAATG
Found at i:123082 original size:42 final size:42
Alignment explanation
Indices: 122966--123085 Score: 125
Period size: 42 Copynumber: 2.9 Consensus size: 42
122956 TTGTCCCTCA
* * ***
122966 AGAGCCTGGGTGATTGAAATGCGGTATCTGG-TTTGTCCTTGG
1 AGAGCCTAGGTGATTCAAATGCACCATC-GGATTTGTCCTTGG
* ** *
123008 AGAGCCTGGGTGATTCAAATGCAGTATCGGATTTGTCGTTGG
1 AGAGCCTAGGTGATTCAAATGCACCATCGGATTTGTCCTTGG
* *
123050 AGAGCCTAGGTGGTTCAAATGCACCATTGGATTTGT
1 AGAGCCTAGGTGATTCAAATGCACCATCGGATTTGT
123086 TCATGGGGAG
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
41 2 0.03
42 67 0.97
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.32
Consensus pattern (42 bp):
AGAGCCTAGGTGATTCAAATGCACCATCGGATTTGTCCTTGG
Found at i:124828 original size:2 final size:2
Alignment explanation
Indices: 124821--124845 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
124811 GAAAAGTGAA
124821 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
124846 AAGGGAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:127756 original size:22 final size:22
Alignment explanation
Indices: 127726--127767 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
127716 TAAATTTCTA
127726 AAAAATAAAAAATACAAAAAAT
1 AAAAATAAAAAATACAAAAAAT
* * *
127748 AAAATTAAACAATTCAAAAA
1 AAAAATAAAAAATACAAAAA
127768 GTGCATAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.17
Consensus pattern (22 bp):
AAAAATAAAAAATACAAAAAAT
Found at i:137466 original size:45 final size:45
Alignment explanation
Indices: 137416--137506 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
137406 GTGAGAATCA
*
137416 TATAATGAAATATCTAATAGAACCCAACAATGCGAGAATAAAGTC
1 TATAATGAAATATCTAACAGAACCCAACAATGCGAGAATAAAGTC
*
137461 TATAATGAAATATCTAACAGAACCCAACAATGTGAGAATAAAGTC
1 TATAATGAAATATCTAACAGAACCCAACAATGCGAGAATAAAGTC
137506 T
1 T
137507 CTAAAACTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.48, C:0.15, G:0.13, T:0.23
Consensus pattern (45 bp):
TATAATGAAATATCTAACAGAACCCAACAATGCGAGAATAAAGTC
Found at i:137621 original size:2 final size:2
Alignment explanation
Indices: 137614--137644 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
137604 TGTTAACTTA
137614 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
137645 AATACGTAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:137684 original size:16 final size:16
Alignment explanation
Indices: 137663--137696 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
137653 GATTTGATAA
* *
137663 TTAATTATTTTTTAAT
1 TTAATTATATTTAAAT
137679 TTAATTATATTTAAAT
1 TTAATTATATTTAAAT
137695 TT
1 TT
137697 GGATATCTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTAATTATATTTAAAT
Found at i:146758 original size:17 final size:18
Alignment explanation
Indices: 146723--146758 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
146713 TTAATTCGGT
*
146723 TCGAAATTAGATAATTAA
1 TCGAAATTAGATAAATAA
146741 TCGAAATTA-ATAAATAA
1 TCGAAATTAGATAAATAA
146758 T
1 T
146759 ATTATATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.33
Consensus pattern (18 bp):
TCGAAATTAGATAAATAA
Found at i:150609 original size:15 final size:15
Alignment explanation
Indices: 150589--150628 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
150579 TGATGAGGAG
150589 GAGGGAGAGGAAAGC
1 GAGGGAGAGGAAAGC
*
150604 GAGGGAGAGGAAAGT
1 GAGGGAGAGGAAAGC
*
150619 GAAGGAGAGG
1 GAGGGAGAGG
150629 GAGAGGAGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.40, C:0.03, G:0.55, T:0.03
Consensus pattern (15 bp):
GAGGGAGAGGAAAGC
Found at i:150643 original size:21 final size:21
Alignment explanation
Indices: 150588--150644 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
150578 GTGATGAGGA
* *
150588 GGAG-GGAGA-GGAAAGCGAG
1 GGAGAGGAGAGGGAAGGAGAG
* *
150607 GGAGAGGAAAGTGAAGGAGAG
1 GGAGAGGAGAGGGAAGGAGAG
150628 GGAGAGGAGAGGGAAGG
1 GGAGAGGAGAGGGAAGG
150645 GATGAAGAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
19 4 0.13
20 4 0.13
21 22 0.73
ACGTcount: A:0.39, C:0.02, G:0.58, T:0.02
Consensus pattern (21 bp):
GGAGAGGAGAGGGAAGGAGAG
Found at i:156747 original size:3 final size:3
Alignment explanation
Indices: 156741--156780 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
156731 AAAAAAAATA
156741 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
156781 TTGCATGATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:166819 original size:28 final size:29
Alignment explanation
Indices: 166788--166845 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
166778 GAAAATAAAT
*
166788 ATATGTATTC-ATTTATTTAAATGTGTAC
1 ATATGTATTCGATGTATTTAAATGTGTAC
*
166816 ATATGTATTCGATGTCTTTAAATGTGTAC
1 ATATGTATTCGATGTATTTAAATGTGTAC
166845 A
1 A
166846 ATTGAATCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 10 0.37
29 17 0.63
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.47
Consensus pattern (29 bp):
ATATGTATTCGATGTATTTAAATGTGTAC
Found at i:168807 original size:23 final size:22
Alignment explanation
Indices: 168754--168807 Score: 54
Period size: 24 Copynumber: 2.4 Consensus size: 22
168744 AACTTATATG
*
168754 TAAGCATTTAAAAAATTATAAA
1 TAAGAATTTAAAAAATTATAAA
* * *
168776 AATACAATTTCAAACAATTATAAA
1 TA-AGAATTT-AAAAAATTATAAA
168800 TAAGAATT
1 TAAGAATT
168808 ATATTAACAC
Statistics
Matches: 24, Mismatches: 6, Indels: 3
0.73 0.18 0.09
Matches are distributed among these distances:
22 1 0.04
23 10 0.42
24 13 0.54
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.31
Consensus pattern (22 bp):
TAAGAATTTAAAAAATTATAAA
Found at i:169761 original size:7 final size:7
Alignment explanation
Indices: 169751--169776 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
169741 CTCTAAACTG
169751 TAAATCT
1 TAAATCT
169758 TAAATCT
1 TAAATCT
169765 TAAATCT
1 TAAATCT
169772 TAAAT
1 TAAAT
169777 TCTAAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (7 bp):
TAAATCT
Found at i:170741 original size:9 final size:9
Alignment explanation
Indices: 170727--170755 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
170717 GGCAATGTCG
170727 TCTTCATCT
1 TCTTCATCT
170736 TCTTCATCT
1 TCTTCATCT
170745 TCTTCATCT
1 TCTTCATCT
170754 TC
1 TC
170756 CCTTTCTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.10, C:0.34, G:0.00, T:0.55
Consensus pattern (9 bp):
TCTTCATCT
Found at i:172400 original size:2 final size:2
Alignment explanation
Indices: 172393--172426 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
172383 ATGGGTTTGT
*
172393 TG TG TG TG TG TG TG CG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
172427 CGTGCATTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.03, G:0.50, T:0.47
Consensus pattern (2 bp):
TG
Found at i:174301 original size:210 final size:210
Alignment explanation
Indices: 173937--174776 Score: 1290
Period size: 210 Copynumber: 4.0 Consensus size: 210
173927 CAATCTATAA
* *
173937 TTGAATCCTCTGCCTTATCCAATATCATTTCAAGCAATGAGATCTCCATGAGTTTACCTGATCCA
1 TTGAATCCTCTGCCTCATCCAATATCATTTCAAGCAATGAGATCTCCACGAGTTTACCTGATCCA
* * * *
174002 GTTCCCTCAGC-GAATTTTGCTAGTGAGCAGATGTTGCAAATCTTAGGGAAATCTTCTGATCCTG
66 GTTTCCTCA-CAGAATTTTGCCAGTGAACAGATGTTGCAAATCTCAGGGAAATCTTCTGATCCTG
* * * *
174066 ACAATTTATCCC-GTTCTGGTTTATACATGAGTGATGGAATTCATAAAAAATCACAAGTGGAATC
130 ACAATTTA-CCCTGTACTGATTTATACATGAGTGATGAAATTCATAAAAATTCACAAGTGGAATC
* *
174130 TGTCATCAGTAATCCGT
194 TGTCATCAGTGATCCAT
* * *
174147 TTGAATCCTCTGCCTCATCCAATATCATTGT-AAGCGATGAGATCTCCACGATTTTACCTGATTC
1 TTGAATCCTCTGCCTCATCCAATATCATT-TCAAGCAATGAGATCTCCACGAGTTTACCTGATCC
* *
174211 AGTTTCCTCGCAGAATTTTGCCAGTGAACATATGTTGCAAATCTCAGGGAAATCTTCTGATCCTG
65 AGTTTCCTCACAGAATTTTGCCAGTGAACAGATGTTGCAAATCTCAGGGAAATCTTCTGATCCTG
*
174276 ACAATTTACCCTGTACTGATTTATACATGAGTGATGAAATTCATAAAAATTCACAACTGGAATCT
130 ACAATTTACCCTGTACTGATTTATACATGAGTGATGAAATTCATAAAAATTCACAAGTGGAATCT
*
174341 GTCATCAATGATCCAT
195 GTCATCAGTGATCCAT
* * *
174357 TTGAATCCTCTGCCTCATCCAATATCATTGCAAGCAATGGGATCTCCACAAGTTTACCTGATCCA
1 TTGAATCCTCTGCCTCATCCAATATCATTTCAAGCAATGAGATCTCCACGAGTTTACCTGATCCA
* * *
174422 GTTTCCTCACAGAATTTTGCCAGTGAGCAGATCTTGCAAATCTCGGGGAAATCTTCTGATCCTGA
66 GTTTCCTCACAGAATTTTGCCAGTGAACAGATGTTGCAAATCTCAGGGAAATCTTCTGATCCTGA
* * *
174487 CAATTTACCCTATACTGATTTATACATGAGTGATAAAATTCATAAAAATTCACATGTGGAATCTG
131 CAATTTACCCTGTACTGATTTATACATGAGTGATGAAATTCATAAAAATTCACAAGTGGAATCTG
174552 TCATCAGTGATCCAT
196 TCATCAGTGATCCAT
*
174567 TTGAATCCTCTGCCTCATCCAATATCATTTCAAGCAATGGGATCTCCACGAGTTTACCTGATCCA
1 TTGAATCCTCTGCCTCATCCAATATCATTTCAAGCAATGAGATCTCCACGAGTTTACCTGATCCA
* *
174632 GTTTCCTCACAGAATTTTGCCAGTGAACATATGTTGCAAAACTCAGGGAAATCTTCTGATCCTGA
66 GTTTCCTCACAGAATTTTGCCAGTGAACAGATGTTGCAAATCTCAGGGAAATCTTCTGATCCTGA
* * ** * *
174697 CAATTTACCATGTACTGATTTATGCACAAGTGATGAAATTCATAACATTTCACAAGTGGAATCTG
131 CAATTTACCCTGTACTGATTTATACATGAGTGATGAAATTCATAAAAATTCACAAGTGGAATCTG
*
174762 TCATCAGTCATCCAT
196 TCATCAGTGATCCAT
174777 CATCATCCTT
Statistics
Matches: 574, Mismatches: 52, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
209 4 0.01
210 569 0.99
211 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (210 bp):
TTGAATCCTCTGCCTCATCCAATATCATTTCAAGCAATGAGATCTCCACGAGTTTACCTGATCCA
GTTTCCTCACAGAATTTTGCCAGTGAACAGATGTTGCAAATCTCAGGGAAATCTTCTGATCCTGA
CAATTTACCCTGTACTGATTTATACATGAGTGATGAAATTCATAAAAATTCACAAGTGGAATCTG
TCATCAGTGATCCAT
Done.