Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012557.1 Kokia drynarioides strain JFW-HI SEQ_127566, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2679
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36


Found at i:435 original size:3 final size:3

Alignment explanation


    Indices: 429--498  Score: 104
    Period size: 3  Copynumber: 23.0  Consensus size: 3

        419 CTACTGATAT

                        *             **                                
        429 TAA TAA TAA CAA TAA TTAA TGT TAA TAA TAA TAA TAA TAA TAA TAA
          1 TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA

                                           
        475 TAA TAA TAA TAA TAA TAA TAA TAA
          1 TAA TAA TAA TAA TAA TAA TAA TAA

        499 AGGAAATTCG


Statistics
Matches: 60,  Mismatches: 6, Indels: 2
        0.88            0.09        0.03

Matches are distributed among these distances:
   3   57  0.95
   4    3  0.05

ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34


Consensus pattern (3 bp):   
TAA

Done.