genome.fa.s12560.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012560.1 Kokia drynarioides strain JFW-HI SEQ_127569, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  577970

Tables:   1   2   

This is table  1  of  2  ( 131 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108--142	17	2.1	16	94	5	61	0	20	0	80	0.72
108--145	12	3.1	12	85	14	51	0	18	0	81	0.69
106--156	21	2.5	20	79	20	61	1	21	0	76	0.88
380--409	11	2.7	11	94	0	51	10	10	13	66	1.44
8553--8640	36	2.4	36	98	0	167	31	14	26	27	1.95
8627--8681	28	2.0	28	85	0	74	30	16	27	25	1.96
14725--14772	21	2.3	21	85	7	62	27	6	27	39	1.80
21055--21087	6	5.5	6	86	13	50	84	0	0	15	0.61
31619--31669	22	2.2	24	86	10	70	31	25	19	23	1.98
40615--41139	50	11.0	50	71	12	282	22	24	15	37	1.93
40816--41143	92	3.5	91	73	11	266	22	25	15	36	1.94
40718--41139	192	2.2	191	84	2	531	22	24	14	37	1.92
40646--41007	142	2.5	142	81	0	438	22	24	14	38	1.92
44817--44871	27	2.0	28	82	3	67	1	34	3	60	1.25
66286--66346	30	2.0	30	87	0	86	22	18	29	29	1.97
66292--66353	30	2.1	30	84	0	79	27	20	25	25	1.99
66334--66406	30	2.4	30	81	0	92	41	23	13	21	1.89
75037--75098	25	2.5	24	74	5	61	38	16	16	29	1.90
80213--80287	24	3.1	24	86	0	105	25	20	25	29	1.99
85132--85175	23	1.9	23	90	0	70	61	4	2	31	1.28
85136--85178	11	3.8	11	80	17	52	65	2	2	30	1.18
91999--92044	20	2.3	20	85	7	58	58	2	4	34	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101454--102094	319	2.0	319	99	0	1264	24	13	20	40	1.89
110313--110337	12	2.1	12	100	0	50	16	0	8	76	1.02
110515--110625	56	2.0	55	94	1	195	37	11	22	27	1.89
129159--129230	24	3.0	24	85	0	99	43	1	36	19	1.60
129370--129493	43	2.8	44	93	2	214	43	19	0	37	1.51
129792--129844	26	2.0	26	88	7	79	54	3	16	24	1.59
129908--129938	16	1.9	16	93	0	53	38	25	0	35	1.56
130329--130380	17	3.1	16	79	15	68	34	26	23	15	1.94
130329--130378	18	2.8	18	82	11	68	34	28	22	16	1.95
130525--130561	16	2.3	16	90	9	58	37	24	0	37	1.56
132910--132956	19	2.6	18	77	12	51	57	4	12	25	1.54
133187--133272	20	4.3	20	71	4	66	47	10	6	34	1.65
140109--140146	20	2.0	20	89	5	60	52	15	7	23	1.69
142263--142365	20	5.1	20	69	10	66	48	9	5	35	1.60
146236--146276	18	2.3	18	86	0	55	24	41	4	29	1.75
154786--154856	28	2.4	29	90	6	117	14	16	19	49	1.80
155878--155956	33	2.4	33	93	0	131	22	1	49	26	1.58
158911--158956	17	2.8	16	78	12	56	4	21	0	73	1.00
161817--161933	57	2.1	57	100	0	234	25	21	24	28	1.99
168319--168389	19	4.1	18	65	18	51	23	5	42	28	1.77
171470--171510	3	13.7	3	100	0	82	34	0	0	65	0.93
171515--171553	21	1.9	20	84	5	51	30	5	5	58	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172685--172741	21	2.8	20	81	2	60	21	3	1	73	1.07
172712--172744	15	2.3	15	94	5	59	24	3	0	72	0.98
174843--174894	9	5.6	9	79	6	50	73	3	7	15	1.21
174854--174905	18	2.9	18	82	0	68	71	5	3	19	1.22
174915--174981	6	11.3	6	77	3	64	22	2	1	73	1.06
178297--178374	17	4.6	17	83	3	86	16	15	32	35	1.90
178649--178697	15	3.3	15	72	11	55	28	4	34	32	1.76
178638--178697	30	2.0	30	96	0	111	28	5	33	33	1.79
179374--179429	22	2.5	22	72	16	53	67	7	1	23	1.24
179384--179424	22	1.9	22	85	5	57	68	7	2	21	1.26
180026--180151	60	2.1	59	82	4	146	38	3	11	46	1.58
185318--185397	26	3.1	26	85	0	115	31	22	11	35	1.89
189240--189297	26	2.2	26	84	0	71	25	18	20	34	1.96
207626--208128	77	6.5	76	85	3	585	33	23	17	25	1.96
207726--208099	38	9.7	39	74	6	188	34	22	16	26	1.95
207626--208129	155	3.3	152	83	4	600	33	23	17	25	1.96
208063--208192	64	2.0	65	86	1	181	38	21	20	20	1.94
219218--219348	42	3.1	42	79	8	108	18	24	11	45	1.82
234939--235006	29	2.2	32	82	7	79	5	20	5	67	1.33
238465--238521	30	1.9	30	85	7	80	21	28	22	28	1.99
238518--238556	15	2.6	15	79	0	51	17	28	23	30	1.97
242237--242392	78	2.0	78	100	0	312	34	33	5	26	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
246446--246485	21	1.9	21	84	0	53	55	10	22	12	1.67
258068--258141	36	2.1	36	87	5	105	36	25	6	31	1.82
267431--267478	18	2.7	18	90	3	71	43	4	14	37	1.65
267431--267483	17	3.1	17	86	5	70	41	5	15	37	1.70
268934--269750	151	5.4	148	86	6	1090	42	2	8	45	1.50
269455--269499	22	2.0	22	82	4	54	51	2	4	42	1.34
268935--269750	301	2.7	300	90	4	1216	42	2	8	45	1.50
270785--271260	239	2.0	237	86	3	670	37	6	13	42	1.71
279989--280032	18	2.4	18	82	17	56	6	15	2	75	1.12
279993--280030	17	2.2	17	86	9	51	5	18	2	73	1.14
284994--285195	106	1.9	106	84	7	273	39	17	11	32	1.85
287679--287743	30	2.2	30	94	0	112	24	3	15	56	1.53
291398--291429	16	2.0	16	100	0	64	37	18	6	37	1.76
294017--294253	120	2.0	120	88	1	359	38	15	24	21	1.92
298335--298407	7	11.1	7	79	15	77	76	1	21	0	0.86
299271--299414	49	2.9	49	85	0	189	38	11	24	25	1.89
299834--300310	42	11.0	44	81	6	464	32	26	16	25	1.96
300498--300532	17	2.1	17	100	0	70	42	17	17	22	1.88
303479--303511	13	2.5	13	90	9	50	81	12	0	6	0.85
305185--305226	16	2.6	16	80	0	57	35	7	0	57	1.26
309585--309659	37	2.0	37	97	0	141	29	22	18	29	1.98
329004--329118	57	2.0	57	93	0	194	40	3	22	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329803--329842	6	6.7	6	94	0	71	70	0	30	0	0.88
337264--337346	42	2.0	42	88	4	123	18	28	24	28	1.98
354519--354543	10	2.5	10	100	0	50	32	0	8	60	1.26
364113--366031	214	9.0	214	80	5	2042	39	14	17	27	1.89
367331--367385	21	2.6	22	80	8	62	65	5	18	10	1.42
372780--372808	3	9.7	3	100	0	58	31	34	34	0	1.58
388413--388450	18	2.1	18	85	9	51	18	13	2	65	1.37
393598--393661	26	2.5	27	80	10	80	26	23	20	29	1.99
394992--395025	17	2.0	17	88	0	50	61	14	0	23	1.33
395065--395089	12	2.1	12	100	0	50	40	16	8	36	1.77
401731--401845	56	2.1	56	96	0	212	37	13	10	38	1.80
410901--410927	14	1.9	14	100	0	54	74	3	7	14	1.18
412533--412672	19	7.4	19	82	0	172	22	27	19	31	1.98
412533--412668	38	3.6	38	90	0	200	22	27	19	30	1.98
412538--412672	57	2.4	57	87	2	191	22	28	19	30	1.98
415054--415080	11	2.5	11	100	0	54	0	14	0	85	0.61
415658--415763	54	2.0	53	83	1	131	35	1	11	50	1.49
415541--415917	156	2.4	154	84	8	476	42	1	10	45	1.49
415643--415956	153	2.0	155	81	6	361	43	2	9	43	1.50
449616--449649	4	8.5	4	86	0	50	23	23	0	52	1.47
449616--449653	12	3.2	12	88	0	58	23	21	0	55	1.44
450923--450973	17	2.8	18	79	8	59	78	5	13	1	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451367--451766	42	9.5	42	87	0	548	22	19	23	35	1.96
452182--452233	3	17.3	3	91	0	50	23	0	11	65	1.25
452570--453079	146	3.4	145	83	6	614	40	2	10	45	1.53
454737--454764	14	2.0	14	100	0	56	78	0	0	21	0.75
481381--481421	22	2.0	20	85	9	55	82	0	17	0	0.66
481381--481414	5	6.8	5	90	9	52	82	0	17	0	0.67
482548--482595	20	2.5	18	80	12	51	10	12	0	77	1.00
495697--495741	17	2.6	17	86	10	56	71	0	15	13	1.15
501190--501247	21	2.7	22	72	20	59	31	24	17	27	1.97
514548--514601	26	2.0	27	85	3	74	50	0	1	48	1.11

Tables:   1   2