genome.fa.s12571.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012571.1 Kokia drynarioides strain JFW-HI SEQ_127580, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  190773

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
752--844	48	2.0	47	89	6	143	34	17	17	31	1.93
2912--3064	42	3.6	42	91	0	243	39	8	26	25	1.84
15043--15086	19	2.3	19	92	0	70	38	22	15	22	1.92
15051--15090	19	2.1	19	100	0	80	42	20	10	27	1.83
17536--17579	18	2.4	18	100	0	88	20	45	0	34	1.51
17954--18012	27	2.2	27	100	0	118	25	22	13	38	1.90
19268--19292	5	5.0	5	100	0	50	80	0	0	20	0.72
33103--33153	21	2.4	21	83	6	68	33	25	11	29	1.91
38441--38578	52	2.7	52	84	0	195	27	14	23	34	1.94
50304--50423	52	2.4	48	86	8	152	23	15	25	35	1.95
50330--50434	52	2.0	52	87	3	149	25	13	23	37	1.92
60148--60218	28	2.6	28	77	4	74	29	18	22	29	1.97
61297--61322	7	3.7	7	100	0	52	30	0	53	15	1.42
88876--89441	42	13.5	42	89	0	785	32	11	26	29	1.91
90488--90534	23	2.0	23	100	0	94	21	17	14	46	1.83
94281--94508	42	5.4	42	85	3	264	35	10	24	29	1.90
94281--94516	126	1.9	127	83	6	309	34	11	24	29	1.90
101988--102047	3	20.0	3	77	13	61	1	30	0	68	0.99
101988--102047	24	2.5	24	83	5	77	1	30	0	68	0.99
126926--126990	30	2.2	29	88	2	94	44	3	15	36	1.62
126977--127128	30	5.1	30	75	10	136	37	3	23	35	1.73
128035--128095	10	5.9	10	71	21	54	55	0	1	42	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128548--128586	20	2.1	19	85	9	53	12	20	43	23	1.86
129309--130097	39	20.2	39	69	5	223	26	21	29	22	1.99
129408--130094	117	5.9	116	71	6	436	25	21	29	22	1.99
129326--130024	156	4.5	156	82	2	778	26	21	29	22	1.99
129319--130097	78	10.0	77	81	4	706	26	21	29	22	1.99
131825--131870	22	2.1	22	87	0	65	32	15	30	21	1.94
139301--139404	29	3.5	30	72	12	83	38	5	21	34	1.77
139480--139562	30	2.7	30	88	5	114	30	6	25	38	1.80
140650--140691	12	3.7	11	81	15	50	59	2	2	35	1.23
141355--141396	7	6.3	7	81	10	52	47	2	0	50	1.14
141355--141394	13	3.1	13	86	10	55	47	2	0	50	1.14
141355--141396	20	2.1	20	90	0	66	47	2	0	50	1.14
142630--142666	18	2.1	18	89	0	56	24	27	0	48	1.51
148510--148546	18	2.1	18	89	0	56	24	27	0	48	1.51
152302--152440	71	2.0	71	95	0	251	20	23	16	39	1.92
156966--157122	43	3.7	43	77	2	154	31	22	9	35	1.87
156967--157124	85	1.9	84	82	4	201	31	22	9	36	1.86
158171--158213	22	2.0	22	81	9	52	34	0	13	51	1.42
168485--168527	22	2.0	22	81	9	52	34	0	13	51	1.42
169255--169307	24	2.2	24	93	0	88	16	7	16	58	1.60
170628--170652	12	2.1	12	100	0	50	24	16	16	44	1.86
171138--171239	23	4.4	23	84	6	134	13	24	17	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171138--171239	48	2.2	45	87	8	143	13	24	17	44	1.85
172060--172104	16	2.8	16	100	0	90	31	6	22	40	1.80
179162--179250	35	2.5	35	83	0	115	29	19	15	35	1.93
180637--180720	29	2.9	29	82	3	98	39	7	14	39	1.73
180637--180716	15	5.5	15	71	16	60	38	6	15	40	1.72
183376--183415	20	2.0	20	95	0	71	15	7	20	57	1.61
189653--189713	27	2.2	27	88	2	86	18	18	8	55	1.66
190012--190463	205	2.2	206	90	1	710	36	21	21	20	1.95

Tables:   1

The End!