genome.fa.s12574.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012574.1 Kokia drynarioides strain JFW-HI SEQ_127583, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120554

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1788--1832	20	2.3	21	85	11	60	48	15	6	28	1.70
2617--2697	22	3.7	21	71	20	60	62	4	4	27	1.36
3077--3115	16	2.5	15	83	4	51	76	7	2	12	1.09
3192--3250	20	2.7	21	80	12	66	71	6	0	22	1.09
3183--3250	4	17.2	4	71	8	50	70	5	1	22	1.17
5129--5255	63	2.0	63	87	0	182	21	22	22	33	1.97
6548--6623	30	2.5	31	91	2	118	27	17	9	46	1.78
6775--6962	57	3.1	59	73	8	159	50	10	14	25	1.74
7240--7283	22	1.9	24	90	9	74	47	2	9	40	1.48
9138--9437	30	10.1	29	74	6	208	36	21	6	35	1.80
9184--9437	59	4.3	59	77	6	226	37	22	5	34	1.78
9163--9437	119	2.3	119	81	6	322	37	22	5	34	1.78
9138--9451	89	3.5	89	76	8	305	35	21	6	36	1.79
9589--9617	6	4.8	6	100	0	58	17	0	0	82	0.66
10829--10870	21	2.0	21	100	0	84	19	14	19	47	1.82
13896--14031	58	2.3	58	76	7	139	43	7	19	29	1.78
14004--14235	30	7.8	29	74	14	145	33	4	24	37	1.76
13984--14235	59	4.3	59	77	6	138	34	5	23	36	1.77
15345--15413	3	22.0	3	76	8	66	37	5	0	56	1.23
16096--16166	6	12.3	6	76	8	76	53	1	2	42	1.24
16096--16151	23	2.4	23	84	0	67	55	1	1	41	1.21
16119--16162	11	3.9	11	82	5	52	54	0	4	40	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16114--16166	23	2.3	23	93	0	88	52	0	3	43	1.19
16066--16145	17	4.7	17	81	4	90	50	5	2	42	1.37
16551--17584	201	5.1	200	85	4	1304	22	23	18	35	1.96
16551--17551	407	2.5	403	88	3	1466	22	23	19	35	1.96
17451--17657	115	1.8	114	87	3	308	22	23	16	37	1.94
29082--29263	96	1.9	96	85	6	253	34	13	20	31	1.91
29482--29542	28	2.2	27	88	2	86	29	6	26	37	1.81
29612--29921	29	10.6	29	75	13	246	34	3	26	36	1.73
29612--29921	59	5.3	59	80	8	291	34	3	26	36	1.73
29620--29921	88	3.4	87	77	10	287	33	3	26	37	1.73
29612--29923	117	2.7	114	78	11	346	34	3	25	36	1.74
31752--31804	6	8.8	6	89	6	81	49	1	1	47	1.23
32799--32833	17	2.1	16	89	5	52	82	0	17	0	0.66
34282--34811	99	5.4	97	79	5	464	34	15	29	19	1.93
34336--34968	49	12.9	49	69	8	268	35	16	28	18	1.94
35051--35333	114	2.5	114	82	2	354	34	16	24	23	1.95
37132--37377	30	8.2	29	70	12	133	35	23	6	34	1.81
37123--37377	90	2.8	90	77	8	225	36	23	6	34	1.80
37325--37382	29	2.0	30	86	3	82	34	25	5	34	1.78
42783--43743	507	1.9	507	95	0	1744	36	14	14	34	1.87
60414--60645	116	2.0	116	95	1	421	43	18	8	30	1.79
61023--61108	17	5.1	17	88	0	127	40	0	2	56	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61025--61109	6	14.8	6	74	14	72	41	0	2	56	1.12
61025--61109	11	7.5	11	74	15	75	41	0	2	56	1.12
62585--62722	59	2.4	59	84	7	174	36	21	2	39	1.65
62598--62871	29	9.3	29	76	7	171	38	24	2	35	1.68
62610--62791	59	3.1	58	77	6	161	36	22	2	38	1.67
62598--62812	59	3.7	57	75	7	155	38	23	1	36	1.66
62682--62910	30	7.7	29	74	10	124	38	27	2	31	1.70
62727--62997	59	4.6	58	74	12	203	36	28	3	32	1.74
62819--62975	30	5.3	29	71	15	108	33	29	4	32	1.77
62923--62987	28	2.3	27	74	7	67	33	29	4	32	1.78
62825--63046	118	1.9	115	81	4	266	35	27	4	32	1.77
67272--67298	3	9.0	3	100	0	54	66	0	0	33	0.92
68204--68233	13	2.4	13	94	5	53	83	0	0	16	0.65
68245--68279	12	2.8	12	86	4	52	80	8	8	2	1.01
68227--68277	15	3.3	15	81	13	50	82	5	9	1	0.91
69207--69335	48	2.6	48	80	7	143	38	15	25	20	1.92
69207--69349	49	2.9	48	75	10	130	39	16	24	18	1.91
69575--69623	24	2.0	24	92	0	80	34	20	10	34	1.86
69612--69879	78	3.4	78	87	3	369	25	33	18	22	1.97
69611--69880	39	6.9	39	71	12	196	25	33	18	22	1.97
69890--70908	209	4.9	209	86	1	1344	38	17	21	22	1.93
71243--71311	17	4.1	17	84	0	84	36	0	5	57	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71246--71317	23	3.2	22	75	13	58	38	0	5	55	1.23
72807--73138	30	11.2	30	72	15	201	38	24	2	34	1.68
72807--73098	60	4.9	59	79	8	225	37	25	1	35	1.66
72887--73098	59	3.6	59	81	8	225	38	24	1	34	1.67
72923--73127	59	3.5	59	79	7	161	39	24	2	33	1.69
73132--73204	28	2.6	28	86	0	101	35	27	5	31	1.80
83921--83953	14	2.4	14	94	0	57	36	21	6	36	1.78
88824--88871	24	2.0	24	87	0	69	25	14	12	47	1.79
90169--90260	21	4.4	21	74	9	80	38	2	6	53	1.39
104578--104619	21	2.0	21	86	9	59	35	21	26	16	1.94

Tables:   1

The End!