genome.fa.s12580.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012580.1 Kokia drynarioides strain JFW-HI SEQ_127589, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  232682

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9185--9645	237	1.9	237	99	0	904	20	20	17	42	1.90
15375--15430	23	2.4	23	80	11	62	39	19	7	33	1.79
16693--16727	18	1.9	18	88	0	52	34	8	20	37	1.83
22060--22096	15	2.5	15	90	0	56	89	0	0	10	0.49
22063--22088	12	2.2	12	100	0	52	92	0	0	7	0.39
23321--23356	9	4.0	9	85	0	54	33	11	22	33	1.89
24632--24662	6	5.2	6	100	0	62	16	0	67	16	1.23
26766--26798	3	11.0	3	100	0	66	66	0	0	33	0.92
28660--28748	44	2.0	44	97	0	169	56	20	1	22	1.49
29712--29740	3	9.7	3	100	0	58	65	0	0	34	0.93
29739--29771	3	11.0	3	100	0	66	33	0	0	66	0.92
30569--30610	21	2.0	21	90	9	68	47	9	4	38	1.57
32925--33004	39	2.1	39	92	0	133	30	3	17	48	1.64
33688--33754	29	2.3	29	84	5	82	47	1	4	46	1.31
33687--33935	123	2.0	124	88	3	367	42	6	8	42	1.58
39869--39932	32	2.0	32	93	0	110	56	17	1	25	1.50
39869--39946	29	2.6	30	89	6	113	51	17	2	28	1.59
40657--40701	22	2.0	24	82	8	58	37	6	13	42	1.70
41697--41758	31	2.0	30	84	9	81	45	3	6	45	1.45
47911--47955	16	2.6	17	79	10	56	35	6	2	55	1.38
48830--48883	23	2.3	24	80	3	65	61	12	0	25	1.32
50870--50905	18	1.9	19	88	5	56	61	0	2	36	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51861--51885	8	3.1	8	100	0	50	24	0	12	64	1.27
51866--51942	28	2.8	27	75	13	75	28	2	3	64	1.24
53052--53235	81	2.2	81	97	1	341	34	4	9	51	1.55
79116--79156	21	2.0	21	85	9	57	48	12	0	39	1.41
80508--80589	41	2.0	41	100	0	164	26	34	2	36	1.70
86961--86997	19	2.1	19	85	10	51	43	0	0	56	0.99
95308--95361	24	2.3	24	83	3	65	44	16	16	22	1.86
100198--100243	3	16.0	3	88	8	69	0	63	2	34	1.07
114435--114469	6	5.8	6	96	0	61	0	11	34	54	1.37
114509--114543	6	5.8	6	100	0	70	0	14	0	85	0.59
115147--115208	29	2.2	28	79	2	70	38	1	3	56	1.25
115733--115763	15	2.0	16	93	6	55	83	0	3	12	0.75
119172--119202	16	1.9	16	93	0	53	61	3	0	35	1.12
119625--119679	25	2.2	25	80	0	65	49	1	5	43	1.36
121546--121575	3	10.0	3	100	0	60	66	0	0	33	0.92
122519--122569	21	2.4	21	83	9	59	33	0	5	60	1.21
123455--123530	17	4.5	17	66	18	59	60	1	3	34	1.23
130631--130714	38	2.2	39	80	8	100	50	2	5	41	1.40
134627--134698	31	2.3	31	83	4	92	27	11	13	47	1.77
135215--135248	11	3.0	11	87	8	50	0	2	11	85	0.71
144329--144830	59	8.5	59	88	1	686	28	4	33	34	1.76
144340--144830	30	16.7	29	73	13	364	27	4	33	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144263--144830	118	4.8	118	86	3	727	28	4	32	33	1.79
144330--144829	29	17.0	30	70	16	293	28	4	33	34	1.76
146618--146674	6	9.8	6	81	14	75	50	1	1	45	1.22
146618--146684	17	3.9	16	79	11	71	53	1	1	43	1.19
146619--146674	23	2.4	23	88	5	87	51	1	1	44	1.22
147983--148027	17	2.6	17	89	0	63	46	6	2	44	1.42
149950--149987	20	2.0	20	89	5	60	36	23	2	36	1.69
149968--150163	58	3.4	58	76	7	166	30	31	5	32	1.81
149968--150134	29	5.8	28	66	16	81	31	30	5	32	1.80
150143--150205	28	2.2	28	88	2	90	31	30	12	25	1.93
157699--157737	20	2.0	20	84	0	51	46	20	2	30	1.64
164357--164385	14	2.1	14	100	0	58	34	13	24	27	1.93
167432--168180	308	2.4	309	97	0	1428	34	12	12	41	1.80
172763--172802	15	2.5	16	84	12	55	42	30	5	22	1.75
173113--173165	23	2.3	23	74	3	54	49	1	5	43	1.37
176410--176435	3	8.7	3	100	0	52	69	0	0	30	0.89
177434--177514	38	2.1	38	93	0	135	27	50	3	18	1.63
192784--192810	2	13.5	2	100	0	54	51	0	0	48	1.00
204996--205040	23	2.0	23	82	8	56	35	2	28	33	1.70
205627--205728	23	4.3	23	81	7	107	39	21	29	9	1.85
205599--205728	23	5.5	24	79	12	103	39	20	29	11	1.87
205600--205728	48	2.7	46	79	9	127	39	20	29	10	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209081--209179	30	3.3	30	88	2	144	23	6	7	63	1.42
209146--209234	26	3.3	26	74	20	92	29	10	7	52	1.63
209080--209179	31	3.3	31	88	2	148	23	6	7	64	1.41
209426--209560	31	4.6	30	71	14	102	50	10	14	25	1.74
213314--214176	142	6.0	141	84	7	994	44	15	15	25	1.85
213315--214166	280	3.0	281	85	6	1074	43	15	15	25	1.85
213830--214124	152	1.9	153	88	4	452	43	15	15	25	1.86
215197--215255	31	1.9	31	89	6	93	28	20	10	40	1.85
215200--215278	31	2.5	31	81	4	86	27	17	12	41	1.86
215506--215665	61	2.6	59	83	6	187	46	11	18	23	1.82
222417--222456	15	2.6	16	80	8	55	62	0	2	35	1.09
223118--223166	22	2.1	24	81	7	57	44	0	2	53	1.12
223891--223983	40	2.3	40	83	9	109	48	5	1	45	1.32
225527--225569	22	2.0	22	85	0	59	23	9	20	46	1.79

Tables:   1

The End!