genome.fa.s12591.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012591.1 Kokia drynarioides strain JFW-HI SEQ_127600, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  196747

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4284--4387	23	4.4	23	79	7	111	45	21	23	10	1.82
4237--4386	71	2.1	69	81	7	169	45	20	22	12	1.83
8364--8395	16	2.0	16	93	0	55	53	0	18	28	1.45
11229--11254	2	13.0	2	100	0	52	50	0	0	50	1.00
14768--14823	21	2.7	21	77	0	58	32	8	21	37	1.84
15579--15624	22	2.1	22	84	8	58	19	8	17	54	1.68
16797--16823	14	1.9	14	100	0	54	70	0	14	14	1.17
21132--21177	17	2.6	18	83	10	51	4	17	4	73	1.15
21726--21757	17	1.9	16	93	6	55	50	15	12	21	1.77
21758--21800	17	2.5	17	88	0	59	55	16	11	16	1.68
33376--33412	19	1.9	19	100	0	74	21	29	16	32	1.95
33526--33577	21	2.5	20	84	12	61	38	26	9	25	1.86
35322--35362	20	2.0	20	85	4	55	36	2	2	58	1.24
35335--35384	20	2.4	21	81	15	52	42	6	0	52	1.26
42068--42100	17	1.9	17	93	0	57	21	6	9	63	1.45
49268--49317	20	2.4	21	81	15	52	42	10	0	48	1.37
54111--54157	24	2.0	24	84	12	62	48	8	14	27	1.73
64531--64630	42	2.4	42	83	6	123	21	9	16	54	1.69
64560--64650	20	4.4	21	68	16	64	18	8	17	54	1.68
68252--68288	18	2.1	18	100	0	74	35	21	16	27	1.94
69300--69360	21	3.0	20	75	13	70	16	9	11	62	1.54
82532--82561	14	2.2	14	94	5	53	6	6	6	80	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90542--90606	30	2.2	30	91	0	103	21	1	15	61	1.42
96731--96768	19	2.0	19	100	0	76	52	5	5	36	1.47
96947--97068	60	2.0	61	84	4	158	27	13	8	50	1.71
96947--97094	60	2.5	58	78	6	147	27	13	8	50	1.71
97986--98023	17	2.2	17	90	9	60	18	0	2	78	0.86
99546--99620	23	3.2	23	72	23	84	66	0	14	18	1.25
99538--99631	47	2.0	47	100	0	188	65	0	12	21	1.25
102857--102909	20	2.7	20	100	0	106	0	20	22	56	1.42
114131--114188	30	1.9	29	82	6	71	53	1	3	41	1.28
118997--119079	41	2.0	42	97	2	159	43	4	14	37	1.67
119401--119619	111	2.0	114	82	5	277	34	21	10	33	1.88
119608--119749	59	2.4	59	84	6	191	21	19	11	47	1.81
122053--122117	32	2.0	32	100	0	130	43	15	9	32	1.78
122209--122255	24	2.0	24	95	0	85	25	23	23	27	2.00
127648--127672	13	1.9	13	100	0	50	56	16	0	28	1.41
127708--127809	52	2.0	52	90	0	159	53	4	7	33	1.51
127800--127874	27	2.8	27	87	0	105	48	4	13	34	1.61
127795--127986	27	7.1	27	71	15	85	47	3	12	36	1.57
127857--128015	60	2.7	60	93	5	277	47	1	11	40	1.48
127847--128007	11	13.6	11	69	15	72	46	1	11	39	1.51
127966--128023	6	10.2	6	76	10	50	46	0	13	39	1.44
136467--136496	14	2.2	14	94	5	53	30	23	10	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137617--137811	11	17.2	11	67	17	69	49	1	10	38	1.47
137686--137815	6	22.3	6	68	14	60	47	1	9	41	1.45
137731--137815	23	3.7	23	90	1	127	47	0	11	41	1.40
137769--137847	17	4.4	17	73	17	79	46	0	12	40	1.42
137775--137863	16	5.4	16	78	9	72	48	0	13	38	1.43
137734--137861	6	22.8	6	73	13	60	47	0	13	39	1.43
137863--137909	13	3.5	13	86	11	67	55	0	4	40	1.19
137863--137921	28	2.1	27	87	9	84	55	0	5	38	1.22
138129--138179	24	2.2	23	85	3	66	68	3	1	25	1.17
138193--138247	21	3.0	18	73	19	51	47	3	0	49	1.19
138226--138327	41	2.5	39	80	14	118	44	4	0	50	1.23
142267--142315	19	2.5	20	83	12	66	36	4	2	57	1.30
143154--143357	113	1.8	113	82	4	268	29	11	22	36	1.89
144259--144529	135	2.0	135	92	0	452	35	10	21	32	1.88
146371--146428	17	3.3	17	71	17	55	27	32	20	18	1.97
146373--146442	36	1.9	36	88	0	104	25	32	20	21	1.97
146373--146427	19	3.1	18	70	17	51	29	30	20	20	1.97
148848--149083	52	4.6	52	89	2	314	32	23	14	29	1.94
148897--149083	103	1.8	104	91	1	313	32	21	14	31	1.93
149883--149966	42	2.0	42	95	0	150	27	14	3	54	1.56
154108--154194	43	2.0	43	97	0	165	22	19	18	39	1.93
156245--156453	52	4.0	52	90	1	321	34	25	11	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157246--157327	42	2.0	42	100	0	164	26	13	2	57	1.49
165294--165387	47	2.0	47	93	0	161	32	23	18	25	1.97
168058--168254	52	3.8	52	85	4	227	33	25	12	27	1.93
180495--180603	22	4.9	22	88	3	130	42	25	22	9	1.83
181128--181201	36	2.1	36	100	0	148	48	8	5	37	1.56
183334--183532	79	2.5	80	78	4	231	33	24	19	23	1.97
191013--191218	79	2.6	78	83	3	261	33	26	18	21	1.96

Tables:   1

The End!