genome.fa.s12592.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012592.1 Kokia drynarioides strain JFW-HI SEQ_127601, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  244298

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263--296	16	2.2	15	94	5	59	32	2	0	64	1.08
1518--1551	17	2.1	17	88	5	52	35	2	0	61	1.11
5035--5078	22	2.0	22	100	0	88	36	18	18	27	1.94
9924--9952	5	6.0	5	92	8	51	82	0	17	0	0.66
15832--15891	30	2.0	32	83	9	81	26	16	11	45	1.82
21078--21123	15	3.0	15	82	14	58	32	0	0	67	0.91
21080--21122	20	2.2	20	87	8	61	32	0	0	67	0.91
23302--23870	284	2.0	284	99	0	1129	26	11	24	37	1.89
32743--32789	23	2.1	22	84	4	58	65	4	2	27	1.22
34088--34164	36	2.1	36	90	0	118	33	11	15	38	1.84
40653--40701	5	9.8	5	97	0	89	0	57	0	42	0.99
43331--43378	25	2.0	25	87	4	71	45	8	0	45	1.33
57938--58013	20	4.2	17	76	18	73	43	2	2	51	1.29
57938--58025	17	4.9	18	72	16	67	43	2	2	52	1.26
58004--58120	62	1.9	59	86	5	162	43	4	2	49	1.35
85377--85475	45	2.2	45	77	13	107	51	11	2	35	1.49
86067--86119	20	2.7	19	77	13	54	64	7	1	26	1.31
93362--93389	2	14.0	2	100	0	56	50	0	0	50	1.00
96994--97078	42	2.0	42	97	0	161	38	4	15	41	1.68
100905--100977	37	2.0	37	94	0	128	34	19	12	34	1.89
111763--111799	13	2.7	15	80	20	53	67	0	0	32	0.91
111799--111837	20	2.0	20	85	10	53	64	5	0	30	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112412--112437	3	8.7	3	100	0	52	30	69	0	0	0.89
112575--112615	21	2.0	21	85	0	55	46	0	19	34	1.50
112829--112867	10	4.0	10	83	6	53	25	0	0	74	0.82
127578--127603	5	5.2	5	100	0	52	61	38	0	0	0.96
129938--129983	17	2.7	16	81	15	56	78	0	19	2	0.86
130682--130721	20	2.1	20	86	9	57	37	2	0	60	1.11
131164--131315	47	3.2	46	87	4	223	30	31	0	38	1.58
131664--131733	35	2.0	35	97	0	131	30	8	12	48	1.71
131767--131846	39	2.1	39	97	0	151	28	12	23	35	1.91
134498--134547	21	2.4	21	90	6	75	40	14	42	4	1.64
134859--135043	43	4.3	44	73	7	148	25	16	24	33	1.96
148510--148542	2	16.5	2	100	0	66	51	0	48	0	1.00
160966--161057	42	2.2	42	90	3	141	18	15	31	34	1.92
162634--162679	20	2.3	21	82	14	62	54	6	0	39	1.26
162634--162692	19	3.1	19	79	16	68	54	5	0	40	1.23
166486--166519	6	5.3	6	86	13	50	0	67	0	32	0.91
166482--166514	14	2.3	15	94	5	59	0	66	0	33	0.92
169404--169428	2	12.5	2	100	0	50	52	0	0	48	1.00
174047--174080	3	11.3	3	100	0	68	67	0	0	32	0.91
192903--192938	15	2.4	15	90	0	54	8	33	19	38	1.82
196079--196112	18	2.0	18	88	11	54	52	14	0	32	1.42
202167--202200	14	2.3	15	90	5	52	73	8	14	2	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213296--213400	49	2.1	50	94	3	194	26	12	15	45	1.81
215574--215615	20	2.0	20	86	4	57	47	0	2	50	1.14
215797--215859	9	6.2	10	71	21	51	30	1	3	65	1.18
215897--215945	19	2.6	19	77	6	55	46	2	0	51	1.12
218430--218476	23	2.1	22	84	7	60	36	2	4	57	1.30
218599--218628	14	2.2	14	94	5	53	33	0	0	66	0.92
221509--221589	40	2.0	40	97	0	153	28	40	7	23	1.81
222060--222085	3	8.7	3	100	0	52	30	34	34	0	1.58
222459--222520	23	2.8	23	80	7	83	48	0	1	50	1.10
227543--227580	18	2.2	18	85	4	51	52	0	0	47	1.00
228120--228339	106	2.1	106	96	0	404	25	11	15	47	1.79
230005--230038	14	2.4	14	86	13	52	8	5	2	82	0.93
243810--243885	29	2.6	29	82	0	89	23	11	7	56	1.61
244175--244220	17	2.7	17	86	0	65	36	0	2	60	1.09
244223--244275	20	2.7	20	93	0	97	45	18	3	32	1.68

Tables:   1

The End!