genome.fa.s12596.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012596.1 Kokia drynarioides strain JFW-HI SEQ_127605, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138653

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5763--5787	13	1.9	13	100	0	50	80	0	4	16	0.87
5760--5798	19	2.1	19	85	9	53	79	0	2	17	0.84
11450--11508	30	2.0	30	82	0	73	20	28	35	15	1.93
11535--11653	54	2.2	54	84	0	157	28	26	30	15	1.96
14886--15431	183	3.0	182	85	3	745	28	7	19	44	1.77
16305--16762	159	2.9	158	86	1	643	32	13	17	37	1.88
17977--18010	15	2.3	15	89	0	50	20	61	0	17	1.34
18005--18153	81	1.8	81	82	2	192	28	44	4	21	1.72
18058--18191	57	2.4	57	75	19	138	30	48	2	18	1.60
18083--18192	57	1.9	57	83	7	143	30	47	1	20	1.61
18162--18243	24	3.5	24	76	1	76	26	50	2	20	1.61
18160--18266	48	2.2	48	85	3	144	28	48	1	20	1.60
19003--19171	30	5.8	29	74	8	119	55	28	1	13	1.48
30518--30560	22	2.0	22	90	4	70	51	0	2	46	1.13
35142--35179	18	2.1	18	90	0	58	23	18	31	26	1.97
45035--45085	26	2.0	26	88	0	75	25	1	29	43	1.66
45383--45476	30	3.2	30	83	4	111	43	25	4	26	1.73
56850--56947	50	2.0	50	89	0	151	36	15	24	23	1.93
57001--57210	39	5.3	39	77	7	192	32	26	16	24	1.96
57001--57211	79	2.7	78	83	5	239	32	26	16	25	1.96
57731--57760	11	2.6	12	94	5	53	26	0	0	73	0.84
58680--58730	26	2.0	26	88	0	75	25	1	29	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59024--59179	30	5.2	30	82	3	163	41	23	4	30	1.74
66602--66862	99	2.6	98	81	2	281	36	19	18	26	1.94
68578--68633	28	2.0	28	100	0	112	39	14	10	35	1.81
71012--71317	80	3.8	80	82	5	343	22	16	24	36	1.94
73338--73362	12	2.1	12	100	0	50	36	8	16	40	1.77
104481--104668	51	3.6	50	81	5	196	32	15	23	28	1.95
104487--104730	51	4.5	54	80	12	195	31	15	22	29	1.95
104617--104795	61	3.0	61	93	1	290	32	15	23	27	1.95
111682--111869	51	3.6	50	83	5	214	32	15	22	28	1.95
111682--111869	104	1.8	103	84	7	256	32	15	22	28	1.95
111818--111996	61	3.0	60	89	1	243	33	14	22	29	1.94
117311--117406	40	2.4	40	92	0	156	33	25	21	19	1.97
118581--118820	51	4.6	51	84	7	272	33	15	23	28	1.94
119864--120181	40	7.9	40	87	1	449	31	27	18	22	1.97
122099--122217	30	4.0	30	84	7	118	33	18	5	42	1.74
131411--131467	29	2.2	25	81	15	62	17	8	14	59	1.59
132102--132261	79	2.0	80	97	1	304	43	13	12	30	1.80
133122--133177	29	1.9	29	85	0	76	42	7	10	39	1.67
134661--134706	20	2.3	21	81	11	60	34	10	23	30	1.89
134672--134713	20	2.1	20	86	0	57	30	7	28	33	1.84
135018--135136	43	2.8	43	89	1	186	22	30	17	29	1.97
135262--135294	15	2.2	15	100	0	66	48	30	0	21	1.50

Tables:   1

The End!