genome.fa.s12600.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012600.1 Kokia drynarioides strain JFW-HI SEQ_127609, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110085

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3006--3098	48	1.9	48	97	0	177	34	25	15	24	1.94
11022--11192	81	2.1	81	93	0	288	40	14	26	18	1.88
13883--14029	73	2.0	73	98	0	285	23	27	17	31	1.97
16368--16405	15	2.6	15	87	4	51	65	0	2	31	1.06
25952--25994	14	2.9	15	83	16	54	79	0	18	2	0.85
26726--26771	23	2.0	23	91	0	74	32	28	19	19	1.96
30988--31571	209	2.8	207	86	3	760	30	16	17	34	1.93
35833--35910	28	2.7	29	78	2	77	33	26	26	12	1.93
45102--45357	129	2.0	129	88	1	379	31	15	22	30	1.95
48497--48571	35	2.1	36	85	2	98	30	14	8	46	1.73
54962--54996	2	17.5	2	100	0	70	48	0	0	51	1.00
64830--64900	20	3.6	19	81	9	72	54	5	1	38	1.33
64829--64900	19	3.7	19	79	7	74	55	5	1	37	1.32
65109--65162	23	2.4	22	75	9	56	38	12	1	46	1.53
67005--67156	80	1.9	80	86	2	216	21	19	26	32	1.97
73221--73278	30	1.9	30	92	0	98	51	12	6	29	1.65
73659--73713	27	2.0	27	100	0	110	25	7	10	56	1.59
80625--80674	20	2.5	20	83	3	55	44	34	2	20	1.63
81232--81345	56	2.0	56	100	0	228	35	28	7	28	1.83
81998--82155	23	6.9	23	87	0	217	46	13	5	34	1.66
84594--85024	23	18.7	23	86	0	547	45	13	5	34	1.67
86245--86473	23	10.0	23	87	0	296	45	13	6	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87695--87869	23	7.6	23	87	0	233	46	12	5	34	1.65
94516--94568	26	2.0	26	82	13	65	39	0	0	60	0.97
94920--94988	31	2.3	31	82	7	79	40	13	13	33	1.82
96363--96427	33	2.0	33	93	0	112	23	20	27	29	1.98
101079--101178	33	3.0	33	81	5	130	26	18	25	31	1.97
107220--107244	13	1.9	13	100	0	50	60	0	0	40	0.97
109321--109360	21	2.0	21	85	5	55	45	30	5	20	1.72

Tables:   1

The End!