Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012601.1 Kokia drynarioides strain JFW-HI SEQ_127610, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6325
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.26

Warning! 42 characters in sequence are not A, C, G, or T


Found at i:3171 original size:56 final size:55

Alignment explanation


    Indices: 3082--3192  Score: 195
    Period size: 56  Copynumber: 2.0  Consensus size: 55

       3072 ATCTTTCACC

                                        *              *           
       3082 CTAAGCTGATAATATTCAGACCTCAAGTTAATCTTAGAAAACATAGTAGCTCCTT
          1 CTAAGCTGATAATATTCAGACCTCAAGTCAATCTTAGAAAACACAGTAGCTCCTT

                                                                    
       3137 NCTAAGCTGATAATATTCAGACCTCAAGTCAATCTTAGAAAACACAGTAGCTCCTT
          1 -CTAAGCTGATAATATTCAGACCTCAAGTCAATCTTAGAAAACACAGTAGCTCCTT

       3193 GAAACTGATT


Statistics
Matches: 53,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  56   53  1.00

ACGTcount: A:0.36, C:0.22, G:0.13, T:0.29


Consensus pattern (55 bp):   
CTAAGCTGATAATATTCAGACCTCAAGTCAATCTTAGAAAACACAGTAGCTCCTT

Found at i:5854 original size:14 final size:14

Alignment explanation


    Indices: 5835--5868  Score: 59
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       5825 AACCCAAAAC

                          
       5835 CAAAATAATAATAA
          1 CAAAATAATAATAA

                          
       5849 CAAAATAATAATAA
          1 CAAAATAATAATAA

            *     
       5863 TAAAAT
          1 CAAAAT

       5869 GATGTAAATT


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  14   19  1.00

ACGTcount: A:0.71, C:0.06, G:0.00, T:0.24


Consensus pattern (14 bp):   
CAAAATAATAATAA
Done.