Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012604.1 Kokia drynarioides strain JFW-HI SEQ_127613, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1995
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32


Found at i:487 original size:16 final size:16

Alignment explanation


    Indices: 462--505  Score: 52
    Period size: 16  Copynumber: 2.8  Consensus size: 16

        452 AGGAGATGTC

                 *          
        462 GTTTTGATTTTTTCTT
          1 GTTTTAATTTTTTCTT

            *            *  
        478 TTTTTAATTTTTTGTT
          1 GTTTTAATTTTTTCTT

                *       
        494 GTTTAAATTTTT
          1 GTTTTAATTTTT

        506 AAAAATATAT


Statistics
Matches: 23,  Mismatches: 5, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  16   23  1.00

ACGTcount: A:0.14, C:0.02, G:0.09, T:0.75


Consensus pattern (16 bp):   
GTTTTAATTTTTTCTT
Done.