Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001261.1 Kokia drynarioides strain JFW-HI SEQ_112634, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3566
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34


Found at i:1733 original size:20 final size:20

Alignment explanation


    Indices: 1708--1745  Score: 58
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1698 TGTATCTGTC

                                
       1708 TCATCCCCGTCCGCCCCGCA
          1 TCATCCCCGTCCGCCCCGCA

                  *    *      
       1728 TCATCCTCGTCTGCCCCG
          1 TCATCCCCGTCCGCCCCG

       1746 TATAATATAA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  20   16  1.00

ACGTcount: A:0.08, C:0.55, G:0.16, T:0.21


Consensus pattern (20 bp):   
TCATCCCCGTCCGCCCCGCA
Done.