genome.fa.s12618.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012618.1 Kokia drynarioides strain JFW-HI SEQ_127627, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97296

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4116--4149	17	2.0	17	88	0	50	64	5	5	23	1.38
4645--4815	43	4.0	43	83	3	191	26	26	19	26	1.99
9033--9094	28	2.2	28	88	0	88	29	11	30	29	1.91
9138--9327	29	6.5	28	69	12	89	43	1	23	32	1.61
9225--9328	29	3.6	29	73	13	97	43	0	20	35	1.58
9138--9384	118	2.1	116	83	5	302	43	1	21	33	1.61
9342--9417	28	2.6	30	77	8	86	47	0	19	32	1.50
9164--9417	59	4.4	58	81	4	253	44	1	21	33	1.60
10402--10468	3	22.7	3	87	3	100	34	0	1	64	1.03
11101--11180	17	4.6	17	77	1	79	50	3	2	43	1.33
11668--12352	49	14.0	49	71	10	260	17	24	18	39	1.92
11643--12348	98	7.2	98	73	8	391	17	24	18	39	1.92
11649--12354	147	4.8	147	80	4	662	17	24	18	39	1.92
21804--21863	28	2.1	28	87	0	84	28	8	31	31	1.86
21938--22037	28	3.5	28	66	20	71	42	3	22	33	1.69
21906--22101	59	3.4	59	82	8	217	41	2	23	31	1.68
22049--22129	29	2.9	28	80	9	101	38	3	28	29	1.74
23794--23870	17	4.5	17	68	16	52	49	3	3	42	1.39
27047--27257	41	5.2	41	88	0	298	16	31	20	32	1.94
27830--27887	23	2.5	23	91	0	89	22	22	25	29	1.99
28142--28186	16	2.8	17	83	10	58	73	2	0	24	0.95
28142--28184	22	2.0	22	90	0	68	74	2	0	23	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28215--28253	10	3.6	11	86	13	55	23	5	0	71	1.05
33414--33893	30	16.1	29	76	9	369	34	27	3	34	1.75
33414--33832	59	7.1	59	84	5	474	35	27	3	33	1.74
33426--33864	89	4.9	88	78	6	395	35	27	3	33	1.74
55388--56134	204	3.7	204	82	5	885	36	20	21	22	1.95
56459--56510	23	2.2	24	86	3	70	46	0	1	51	1.12
56459--56533	17	4.3	17	74	14	64	45	0	1	53	1.08
56459--56533	6	12.8	6	72	16	59	45	0	1	53	1.08
56466--56540	23	3.2	24	85	5	93	44	0	1	54	1.08
56535--56586	23	2.2	25	90	10	83	51	17	3	26	1.62
57346--57371	12	2.2	12	100	0	52	50	7	7	34	1.60
57350--57438	3	29.0	3	76	4	61	56	1	3	39	1.23
57362--57438	22	3.6	21	76	11	84	57	0	2	40	1.13
57362--57435	25	3.0	25	76	11	80	56	0	2	40	1.13
58463--58772	30	10.5	29	80	8	331	35	28	2	33	1.71
58463--58781	59	5.4	58	86	4	406	35	28	3	32	1.73
61592--61937	144	2.4	144	92	0	559	25	25	18	31	1.97
61824--62052	114	2.0	114	88	1	343	25	20	20	33	1.97
61680--62189	258	2.0	258	90	0	797	26	23	18	32	1.97
61938--62719	144	5.4	144	89	2	1167	26	22	18	31	1.97
75345--75409	31	2.1	32	88	2	96	38	35	4	21	1.74
78900--79044	23	6.4	22	85	7	125	13	23	24	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78915--79044	68	1.9	69	80	10	151	12	23	25	39	1.89
81601--81684	39	2.2	39	78	10	91	27	19	21	32	1.97
81618--81697	39	2.0	40	88	7	119	28	17	22	31	1.97
90916--91210	144	2.0	144	91	1	475	33	16	21	28	1.95
91558--91735	59	3.0	58	85	7	243	31	16	16	35	1.91
91642--91837	101	1.9	103	90	2	315	32	19	11	36	1.87
91753--91909	61	2.6	60	78	7	176	31	17	17	33	1.93
94291--94341	11	4.4	11	75	20	50	50	3	1	43	1.31
94279--94331	24	2.2	25	86	3	72	50	5	1	41	1.36
94295--94340	18	2.6	19	76	13	53	50	4	2	43	1.34
94362--94814	84	5.3	83	84	7	570	42	5	4	47	1.48
94361--94814	169	2.7	171	89	5	697	42	5	4	47	1.48
97249--97294	24	2.0	24	83	12	60	26	4	4	65	1.30

Tables:   1

The End!