genome.fa.s12620.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012620.1 Kokia drynarioides strain JFW-HI SEQ_127629, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  231457

Tables:   1   

This is table  1  of  1  ( 106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682--707	2	13.0	2	100	0	52	50	0	0	50	1.00
4950--5008	3	21.0	3	76	13	63	67	1	30	0	1.00
4950--5008	11	5.2	12	80	12	63	67	1	30	0	1.00
8928--9186	123	2.1	123	94	0	446	36	12	9	41	1.76
9102--9272	86	2.0	86	94	0	297	33	13	8	43	1.75
8979--9375	209	1.9	208	92	0	659	36	12	9	42	1.75
11338--11398	21	2.9	21	97	0	113	29	24	26	19	1.99
19223--19297	28	2.7	28	87	0	96	25	14	21	38	1.91
19289--19362	28	2.6	28	93	0	130	18	12	24	44	1.84
19249--19367	28	4.2	28	81	9	125	19	12	22	45	1.84
20577--20607	15	2.1	15	93	0	53	38	3	29	29	1.73
26428--26470	18	2.3	19	80	8	52	60	2	9	27	1.40
29465--29516	21	2.5	21	84	3	61	38	11	21	28	1.88
31318--31373	15	3.5	15	76	21	60	37	7	0	55	1.27
34938--34993	28	2.0	28	100	0	112	28	21	17	32	1.96
38140--38258	58	2.0	58	81	10	136	24	21	7	47	1.76
40736--40770	10	3.3	10	92	8	52	17	8	0	74	1.06
50507--51003	29	17.2	28	76	11	348	36	1	25	36	1.67
50512--51006	30	17.1	30	74	12	365	36	1	25	36	1.67
52747--52870	6	20.8	6	73	8	94	57	2	0	39	1.18
52755--52858	17	6.1	17	88	2	154	58	2	0	37	1.19
52759--52857	52	1.9	52	91	0	162	58	3	1	37	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52845--52873	14	2.1	14	100	0	58	55	0	0	44	0.99
57521--57557	19	1.9	19	100	0	74	21	45	21	10	1.82
57549--57611	21	3.0	21	88	6	85	20	23	22	33	1.97
57549--57598	14	3.6	14	80	0	64	20	26	24	30	1.98
59250--59289	14	2.9	14	85	7	55	35	2	2	60	1.24
64152--64185	16	2.1	17	88	5	52	38	2	5	52	1.41
68986--69016	2	15.5	2	100	0	62	51	0	0	48	1.00
69006--69648	340	1.9	340	97	0	1214	36	18	17	26	1.94
80069--80093	12	2.1	12	100	0	50	56	0	8	36	1.29
82018--82044	9	3.0	9	100	0	54	88	0	0	11	0.50
87223--87283	25	2.4	25	81	10	70	63	0	14	21	1.30
87303--87398	27	3.5	28	68	18	76	69	0	19	10	1.16
89939--90071	45	3.0	45	80	7	146	24	21	12	42	1.86
94163--94314	71	2.1	71	97	0	286	36	16	6	40	1.74
94307--94413	53	2.0	53	96	0	196	36	17	1	43	1.60
100134--100287	73	2.1	72	95	2	274	38	12	1	46	1.51
101485--101522	13	2.8	14	84	8	51	52	0	0	47	1.00
102425--102469	19	2.5	17	80	16	54	62	4	6	26	1.39
105417--105502	28	3.1	28	80	9	72	36	0	10	53	1.35
105451--105502	26	2.0	26	84	0	68	32	0	7	59	1.26
105656--105705	16	3.1	16	85	2	55	30	0	18	52	1.46
105673--105705	16	2.1	16	94	0	57	27	0	21	51	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106768--106864	43	2.3	43	88	0	149	45	10	12	31	1.75
108250--108300	23	2.2	24	82	10	61	27	25	0	47	1.53
110724--110779	21	2.7	21	82	0	67	35	23	10	30	1.89
111534--111719	52	3.6	52	91	3	304	33	23	15	26	1.95
115571--115638	20	3.4	20	70	8	66	38	11	7	42	1.69
115529--115667	40	3.5	39	83	5	138	35	13	11	39	1.81
118140--118192	21	2.5	20	72	6	52	39	7	11	41	1.69
120730--120907	89	2.0	89	97	0	338	33	20	8	37	1.83
124313--124413	40	2.5	41	82	7	127	32	14	13	38	1.86
124964--124989	3	8.7	3	100	0	52	34	0	0	65	0.93
125853--125879	12	2.2	12	100	0	54	77	7	0	14	0.97
126034--126149	12	9.9	12	70	9	69	68	18	5	7	1.32
126034--126116	23	3.5	24	73	4	71	67	18	6	8	1.37
126041--126108	35	1.9	35	87	0	100	67	17	5	8	1.37
127218--127252	16	2.2	16	90	10	54	62	5	0	31	1.18
132664--132709	24	1.9	24	86	8	67	21	10	0	67	1.21
137868--137905	2	19.0	2	100	0	76	50	50	0	0	1.00
138065--138117	24	2.2	24	82	0	61	22	28	1	47	1.62
138872--138905	17	1.9	18	88	5	52	41	2	0	55	1.15
139031--139072	22	1.9	22	85	0	57	26	0	0	73	0.83
139039--139072	15	2.4	15	90	9	54	17	0	0	82	0.67
140842--140879	14	2.7	14	87	0	58	44	13	13	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141433--141474	13	2.9	14	80	13	50	45	2	0	52	1.13
141484--141533	16	3.2	16	70	18	52	50	0	0	50	1.00
142280--142343	16	4.1	16	74	22	57	68	7	1	21	1.23
142319--142350	16	2.0	16	93	0	55	75	9	0	15	1.05
147472--147522	20	2.6	20	90	3	77	27	31	13	27	1.94
150406--150489	41	2.0	41	100	0	168	44	21	9	25	1.82
160617--160642	5	5.2	5	100	0	52	0	19	0	80	0.71
161212--161251	17	2.3	18	91	4	64	50	12	20	17	1.78
165193--165356	25	6.5	25	85	3	186	32	26	17	23	1.96
165192--165356	75	2.2	75	83	3	206	32	26	17	23	1.97
165192--165356	50	3.3	50	85	0	213	32	26	17	23	1.97
168194--168229	18	2.0	18	88	0	54	33	44	13	8	1.74
171154--171225	36	2.0	36	100	0	144	27	11	27	33	1.91
177171--177195	13	1.9	13	100	0	50	20	0	0	80	0.72
177923--177950	13	2.2	13	100	0	56	32	14	7	46	1.71
180430--180548	25	4.7	25	82	1	121	32	19	20	27	1.96
182115--182147	14	2.3	15	89	5	50	51	12	0	36	1.39
184053--184082	12	2.5	12	94	0	51	26	33	3	36	1.73
187697--187977	25	11.2	25	83	0	292	23	18	24	33	1.97
188935--188968	17	1.9	18	88	5	52	38	2	17	41	1.65
190448--190583	52	2.6	52	85	2	184	33	24	15	27	1.95
192167--192207	9	4.8	9	82	8	50	78	0	19	2	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192167--192207	17	2.4	17	87	4	55	78	0	19	2	0.87
192810--192875	31	2.2	31	86	8	91	21	13	18	46	1.83
196347--196603	72	3.6	72	87	3	383	23	6	16	52	1.67
198737--198761	11	2.3	11	100	0	50	68	0	0	32	0.90
203989--204033	14	3.6	14	72	27	55	35	8	22	33	1.85
203988--204043	23	2.4	23	100	0	112	33	8	21	35	1.85
205466--205494	13	2.2	13	100	0	58	37	27	6	27	1.82
209747--209785	17	2.3	17	81	0	51	15	10	25	48	1.76
209775--209870	41	2.3	41	92	0	156	32	6	23	37	1.80
209859--209896	18	2.2	18	85	4	51	44	7	10	36	1.68
214138--214162	12	2.1	12	100	0	50	36	8	32	24	1.84
220651--220737	38	2.3	38	80	7	113	28	14	28	27	1.96
220654--220740	19	4.6	19	72	5	77	29	13	29	26	1.94
227036--227062	14	1.9	14	100	0	54	7	48	7	37	1.59
227523--227566	21	2.1	21	83	8	54	45	4	2	47	1.35
228018--228050	13	2.5	13	95	0	57	75	0	3	21	0.93
229833--229891	24	2.5	24	91	0	91	28	0	47	23	1.52
229916--229998	30	2.8	30	83	7	114	28	6	45	19	1.74

Tables:   1

The End!