genome.fa.s12637.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012637.1 Kokia drynarioides strain JFW-HI SEQ_127647, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30154

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--34	3	9.7	3	92	7	51	63	0	0	36	0.95
5--44	12	3.2	13	89	6	57	60	0	2	37	1.11
1131--1382	29	8.6	28	76	14	233	31	28	6	32	1.82
1131--1468	59	5.8	61	81	9	268	31	28	5	33	1.81
1129--1382	88	2.9	89	78	13	242	31	28	6	33	1.83
13238--13335	6	16.5	6	69	14	69	40	4	1	54	1.26
13238--13346	17	6.2	17	79	13	105	41	3	1	53	1.29
13229--13283	29	1.9	28	85	3	74	38	1	1	58	1.20
13238--13320	37	2.3	35	89	8	123	38	3	1	56	1.24
13305--13350	23	2.0	23	82	0	56	52	2	2	43	1.25
14055--14112	10	5.8	10	83	6	64	63	0	1	34	1.04
14075--14117	13	3.5	13	84	12	56	67	0	0	32	0.91
14070--14117	23	2.1	23	85	14	64	66	0	0	33	0.92
14672--14777	54	2.0	53	98	1	196	46	15	16	20	1.83
15224--15509	29	9.8	29	83	5	328	36	26	2	34	1.71
15224--15509	88	3.3	85	85	7	367	36	26	2	34	1.71
15224--15522	59	5.1	58	82	8	345	36	27	3	33	1.72
15224--15568	59	5.9	59	82	3	223	35	27	3	34	1.73
15582--15644	28	2.2	28	91	0	99	33	28	9	28	1.88
20620--21110	256	1.9	252	81	6	567	35	12	13	38	1.82
21465--21618	60	2.6	59	81	3	164	25	11	13	49	1.76
21857--21915	31	1.9	31	89	6	93	42	8	20	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26003--26053	18	2.8	19	77	16	63	66	0	0	33	0.92

Tables:   1

The End!