Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012641.1 Kokia drynarioides strain JFW-HI SEQ_127651, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 842

Length: 1404
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32


Found at i:538 original size:17 final size:17

Alignment explanation


    Indices: 512--545  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        502 AAATTATGAG

                             
        512 TTTGAATTTAATTTAAA
          1 TTTGAATTTAATTTAAA

                 *    *      
        529 TTTGAGTTTATTTTAAA
          1 TTTGAATTTAATTTAAA

        546 CTAAAATTAG


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56


Consensus pattern (17 bp):   
TTTGAATTTAATTTAAA
Done.