genome.fa.s12645.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012645.1 Kokia drynarioides strain JFW-HI SEQ_127655, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  165910

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5153--5194	10	4.1	10	80	17	50	71	0	26	2	0.98
8572--8611	19	2.1	19	95	0	71	45	7	20	27	1.78
9865--9914	21	2.4	21	80	6	57	16	8	40	36	1.77
11805--11847	10	4.2	10	81	3	50	2	16	0	81	0.79
12432--12473	17	2.4	18	88	4	59	57	14	11	16	1.66
26284--26402	61	2.0	61	91	3	195	29	12	18	39	1.88
31885--31917	11	3.0	11	90	0	57	63	3	0	33	1.10
34114--34183	6	11.2	6	77	19	54	80	1	5	12	0.96
36671--36701	14	2.1	15	94	5	55	70	0	9	19	1.14
38058--38094	16	2.3	16	100	0	74	51	0	27	21	1.48
47824--47856	15	2.1	17	88	11	52	6	9	15	69	1.34
56372--56429	26	2.3	25	80	17	66	37	3	5	53	1.40
57538--57566	7	4.1	7	100	0	58	0	0	13	86	0.58
59198--59260	26	2.5	26	80	12	71	71	1	3	23	1.09
59198--59234	6	6.3	6	82	17	51	70	0	2	27	1.01
60357--60387	6	5.2	6	100	0	62	0	0	16	83	0.64
60991--61329	50	6.7	51	68	13	173	27	18	17	36	1.93
61134--61328	100	1.9	102	82	6	245	29	18	14	36	1.91
67809--67853	13	3.5	13	84	0	63	0	13	0	86	0.57
68293--68574	141	2.0	140	94	0	492	37	20	14	27	1.92
68578--68620	17	2.5	17	77	11	52	51	6	20	20	1.71
69039--69084	24	1.9	24	86	8	67	0	39	2	58	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70801--70842	22	1.9	22	95	0	75	28	19	23	28	1.98
74737--74774	10	3.8	10	80	13	51	60	5	0	34	1.19
74741--74808	19	3.5	19	84	6	84	55	5	0	38	1.24
74743--74807	20	3.3	20	82	8	80	55	6	0	38	1.25
75042--75090	5	9.8	5	90	0	53	26	24	18	30	1.98
80460--80508	3	16.3	3	91	0	80	63	0	34	2	1.06
88535--88563	11	2.5	12	88	11	51	68	0	0	31	0.89
89247--89306	31	2.0	30	90	3	93	38	11	3	46	1.57
92201--92242	2	21.0	2	100	0	84	50	0	0	50	1.00
97737--97767	2	15.5	2	100	0	62	0	0	48	51	1.00
101618--101654	2	18.5	2	100	0	74	0	48	0	51	1.00
105668--105728	24	2.5	24	100	0	122	32	8	6	52	1.57
109612--109656	23	2.0	23	82	8	56	44	33	4	17	1.69
109696--109757	6	9.7	6	76	13	61	17	17	20	43	1.88
109702--109752	13	3.9	14	82	10	63	17	19	21	41	1.91
109684--109766	26	3.1	27	77	5	80	19	20	21	38	1.93
109689--109769	20	4.1	20	84	7	78	17	18	20	43	1.88
113819--113905	28	3.1	28	85	6	106	35	24	20	19	1.96
120649--120727	9	9.1	8	71	15	52	39	0	2	58	1.12
120657--120745	19	4.8	18	72	12	74	38	0	2	59	1.10
121130--121165	18	2.0	18	94	0	63	61	0	2	36	1.11
129122--129156	16	2.1	16	89	5	52	34	0	8	57	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129574--129634	29	2.1	28	82	14	72	57	1	1	39	1.18
129622--129665	23	2.0	23	86	13	65	50	0	0	50	1.00
129662--129694	17	2.0	17	88	5	50	39	0	6	54	1.25
136636--136746	52	2.1	52	88	0	159	34	24	14	27	1.94
141333--141371	11	3.6	11	96	3	71	17	10	5	66	1.39
147632--147670	11	3.6	11	96	3	71	17	10	5	66	1.39
153797--153983	52	3.6	52	84	0	239	34	24	14	26	1.94
155872--156164	52	5.6	52	83	5	360	37	22	13	25	1.92
155872--156164	105	2.8	104	86	4	394	37	22	13	25	1.92
155872--156164	157	1.9	157	89	4	457	37	22	13	25	1.92
156628--156659	16	2.0	16	93	0	55	25	18	3	53	1.59
159041--159221	89	2.0	89	100	0	362	29	6	31	32	1.83
163675--163743	17	4.1	17	74	7	59	33	4	5	56	1.43

Tables:   1

The End!