Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012654.1 Kokia drynarioides strain JFW-HI SEQ_127665, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2324
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.36
Found at i:1095 original size:132 final size:132
Alignment explanation
Indices: 858--1217 Score: 634
Period size: 132 Copynumber: 2.7 Consensus size: 132
848 CTCTTTACTC
858 GTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCCGTATCTCATCAGGAAGCTAACCGTCTAT
1 GTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCCGTATCTCATCAGGAAGCTAACCGTCTAT
*
923 TGCTTCGACCTGCTTCTCAGTGTCTCATCCGGAAGATGATCACATCGCTGTTTC-AATCCGCTTC
66 TGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGATGATCACATCGCTGTTTCAAAT-CGCTT-
987 TT-T
129 TTCT
*
990 GTATCTCATCAGGAAGACAAATTTGGTTCACTTCTCCGTATCTCATCAGGAAGCTAACCGTCTAT
1 GTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCCGTATCTCATCAGGAAGCTAACCGTCTAT
* *
1055 TGCTTCGACTTACTTCTCAGTGTCTCATCAGGAAGATGATCACATCGCTGTTTCAAATCGCTTTT
66 TGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGATGATCACATCGCTGTTTCAAATCGCTTTT
1120 CT
131 CT
*
1122 GTATCTCATCAAGAAGACGAATTTGGTTCACTTCTCCGTATCTCATCAGGAAGCTAACCGTCTAT
1 GTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCCGTATCTCATCAGGAAGCTAACCGTCTAT
*
1187 TGCTTCGACCTGCTTCTCGGTGTCTCATCAG
66 TGCTTCGACCTGCTTCTCAGTGTCTCATCAG
1218 AAAGCTTGGG
Statistics
Matches: 217, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
131 2 0.01
132 212 0.98
133 3 0.01
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (132 bp):
GTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCCGTATCTCATCAGGAAGCTAACCGTCTAT
TGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGATGATCACATCGCTGTTTCAAATCGCTTTT
CT
Done.