Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012657.1 Kokia drynarioides strain JFW-HI SEQ_127668, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6688
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:2210 original size:12 final size:12

Alignment explanation


    Indices: 2193--2217  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       2183 CTACTTCGTT

                        
       2193 ATTGTAGAAATG
          1 ATTGTAGAAATG

                        
       2205 ATTGTAGAAATG
          1 ATTGTAGAAATG

             
       2217 A
          1 A

       2218 GTACCTTGGT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32


Consensus pattern (12 bp):   
ATTGTAGAAATG
Done.